Adar006538.1
Basic Information
- Insect
- Anopheles darlingi
- Gene Symbol
- Bcl11b
- Assembly
- GCA_000211455.3
- Location
- scaffold:24872-27688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.021 1.2 9.0 0.8 3 23 162 183 161 183 0.95 2 15 0.15 9.1 6.2 0.5 2 17 196 211 195 215 0.86 3 15 0.077 4.5 7.2 3.7 1 23 228 251 228 251 0.95 4 15 0.63 38 4.3 5.0 3 23 432 452 431 452 0.91 5 15 0.029 1.7 8.5 0.4 1 17 471 487 471 492 0.78 6 15 4.5e-05 0.0027 17.3 0.2 1 20 587 606 587 608 0.94 7 15 2 1.2e+02 2.8 0.7 1 20 623 642 623 647 0.82 8 15 0.81 48 4.0 0.1 1 20 716 735 716 737 0.94 9 15 0.18 11 6.0 0.4 2 23 744 765 743 765 0.94 10 15 0.00041 0.025 14.3 6.3 1 21 771 791 771 793 0.96 11 15 1.2e-05 0.00074 19.1 0.9 1 23 798 821 798 821 0.97 12 15 2e-05 0.0012 18.4 3.5 1 23 826 848 826 848 0.99 13 15 0.038 2.2 8.1 0.3 1 23 854 879 854 879 0.92 14 15 1.5e-05 0.00091 18.8 1.5 1 23 885 907 885 907 0.98 15 15 8.8e-06 0.00052 19.6 0.2 1 20 913 932 913 934 0.94
Sequence Information
- Coding Sequence
- ATGGAAAGTCGAAGGGCCGTTAAAATTTGTCGTATCTGCAGTAAACCGGACAACGATGATTTCATCTCGGTGCAGCTTATCCAGGACCAGATGACGATCGCAGAGAAAATCTTGGCAGTCTCGGGGATCGCGGTGATGAGAGATCGGCGTCTGCCTCAGAACATCTGCTTGAAATGCCTGGATAGAGTCAACCAAGCGTTTGAGCTGCGGCGAGAGTGCATCGAAACGGATTCTCGCTTACGCGCAGCCCTCCCCGACGTCAAGCCCTCCGGAAGCCCGCAACATCACAATTCCGGATCTTCGGAGTACATCGTCGAATTCCTGGAAGAAGCAACTGGCGAGCACGAGGCGGACGACGGGGACGGAGTTCCGGAGAGGCCCACAGATAGCCGTGAGCTGCAGGACGACACGATCTCGGAACCGTATCAGGCACAAAATAGCACCTGGAGACTAGGCGAGCATTATCAGCGCCTGCGGCCCGATTGCTGTGGATGCACCTTGAGATTTGATAGCAAAGAAGAGCTGTTCGTGCATGCTCTTCGAGTACATCGCAAACAAAAACGGCGTTCCAAGTATCGTCCATGCCAGTGTCCAGTTTGCTATAGATCTTACACGAGCGAAGAGGCTCTAGCATTCCATTACATAGATTTCGACCTACATCACCCGGCAAAAGGTGACCTCTATCAGTGTCTCTTCTGCAACCAGACTCTCAAAACACACGTCGGACTGCTTAAACATTTGGAGCATCAGCATGGCCGATACGAGAACGATCCTTGGCAGGAAAAGGCACACATTGTGGAGCCTATACCAAAGTCATCGACAACATCATCCGATGTGAGTGATCTTCGCATAGAGATACAAACCCTTCACGACGAAGAGCGAATGGAAGAGGATGGTGAAGcgacgggagacatcaaccgaccggaaacatctaccgGAACACCGGACGAGGAATATGTCACTGATACGACTGTCGATGCAAAATCAATACAAGACGAACAGTATTTGGAACTGgatgatgatgatgatgatgatgGTAGAAACGAGGAATCTGAAGAGTATGAAGCTTTCCAGGACGAGGTGGATAACGGCAGTGACGTTGACTATGACTATGCGGATGATGATGGTAGTGATTTGGAGGTGAAAATCTACCGACCTCAAACATCAAAGGCAGGACGTGTGAAGAACAAACAGCAAAGTGCCTTGCAGCGTGTGTTACAAATTCCGGAAGAATATCGCCGTGTTGTAGCAAATCGGGAGACGTACATGATCGTTGAGCTAATGCATGAGCGATGCTGCTGCTGTGCAAAGTTTTTTGCCACTGACCAACAGTTGCAGGAGCACATGAGGCAACATCAAGAGGAACATTCACGCATTAACTCGTCTCAGGAACATGAACCAGCTTGGAAATACCGTTGCGAATATTGCTGGAAAACGTTTCCATTTGCTATTACGTACATATTTCATTTGCGCATTCGGCAACGGCGTCAGTTTTATCTGTGTGGACTCTGTAATCTTGTTATGGACACAGAGAAACGCATGAAATCGCATATGCTCCGCAGCGAGCAGCACGCCAGCTTCTTCGATTTACCACGTGCGGACGTTAGCGATCAGTACTATATAAGCGTGCTGGCCGGTATTCGGTGCTGTAGATGCAGAACTTACTTTGAGAGCCATGAGGATTTTAACGAGCATTGCCGGGTTACTCATAGCCGACAGATGCTAGCAGAAAGCCGCCACACGGTAGACACCCATCCGTTCGAATGCAGTGTTTGTAAGCGACGCTTCACTCGAAAGGCTCTGCTCGAGCAGCATGTGACCGTAGGGACGACTATTACAGACAAAAACACACGCAGTTTCGTCAAGTACTGCTGCAAGTTGTGTGACTATACAACGTATACTATTGAACGCATCGAGGCCCACTTATACGGTGCCGTTCACATTGATGTGCTGGCAAAAGTACACCTTGAGCCATTGAATAATGAATTCAAGAAGCTGGACACGATGCGCTACTGCTGTTCGCCACAGTGCAAAAAATCATTCCTAAACACAGAAATCCTACAGGCCCACTTCCGAGACTGTCACGGGGAAACTCTGGCCGCAAACCAACGTGCCAATAGCGAACAGGAGGCAAAACAAGCAGTGTACGAGTGCTTTATTTGTACGTTGAGATTGGAGAGTGTGAATGCTCTAAGAGACCATCAGACACTGCGTTCGCaaaaaaaCTGTGTCTGTCCGATATGCGGTATCAAGAAACAGTCTCGATCGGCAATGCTagcccacgagcgatcgcacaccggcgaacgaccgtatcgttgcgagttgtgcgataaaacatttgctagcacgagctgcctgcgatcacaccagaggtgccacgtaccacgggagtacgaatgcagtacgtgcaaagagctatttgcgagacttgaaaatctcaaacgccacattcggctcaaacatggcgaggcaacgtacaagtgtgaaatttgttcgaagatgttcaaaacgcacgaaaagctctccattcacaaacggattcacacgggcgagaaaccgtacgaatgCCGAACGGAGGGTTGCGATCGAAGGTACACGAATACTGCGGATCGAAGGCGTCATGAGATGGCCGAGCATACACTGGAACGTCCCCATCAATGTGGCTATTGTGAGGCGGCTTTCATTCGCAAACGACAACTGATGATCCACCAACGCCGCCATACCGGAGATCGACCATATCCCTGCCCAAAGTGCGGCAAGACGTTTGTCGATGCGACAAGGTTGCGAAAGCATACCGAAAAAGTGTGCTCCTTTTAA
- Protein Sequence
- MESRRAVKICRICSKPDNDDFISVQLIQDQMTIAEKILAVSGIAVMRDRRLPQNICLKCLDRVNQAFELRRECIETDSRLRAALPDVKPSGSPQHHNSGSSEYIVEFLEEATGEHEADDGDGVPERPTDSRELQDDTISEPYQAQNSTWRLGEHYQRLRPDCCGCTLRFDSKEELFVHALRVHRKQKRRSKYRPCQCPVCYRSYTSEEALAFHYIDFDLHHPAKGDLYQCLFCNQTLKTHVGLLKHLEHQHGRYENDPWQEKAHIVEPIPKSSTTSSDVSDLRIEIQTLHDEERMEEDGEATGDINRPETSTGTPDEEYVTDTTVDAKSIQDEQYLELDDDDDDDGRNEESEEYEAFQDEVDNGSDVDYDYADDDGSDLEVKIYRPQTSKAGRVKNKQQSALQRVLQIPEEYRRVVANRETYMIVELMHERCCCCAKFFATDQQLQEHMRQHQEEHSRINSSQEHEPAWKYRCEYCWKTFPFAITYIFHLRIRQRRQFYLCGLCNLVMDTEKRMKSHMLRSEQHASFFDLPRADVSDQYYISVLAGIRCCRCRTYFESHEDFNEHCRVTHSRQMLAESRHTVDTHPFECSVCKRRFTRKALLEQHVTVGTTITDKNTRSFVKYCCKLCDYTTYTIERIEAHLYGAVHIDVLAKVHLEPLNNEFKKLDTMRYCCSPQCKKSFLNTEILQAHFRDCHGETLAANQRANSEQEAKQAVYECFICTLRLESVNALRDHQTLRSQKNCVCPICGIKKQSRSAMLAHERSHTGERPYRCELCDKTFASTSCLRSHQRCHVPREYECSTCKELFARLENLKRHIRLKHGEATYKCEICSKMFKTHEKLSIHKRIHTGEKPYECRTEGCDRRYTNTADRRRHEMAEHTLERPHQCGYCEAAFIRKRQLMIHQRRHTGDRPYPCPKCGKTFVDATRLRKHTEKVCSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -