Basic Information

Gene Symbol
JARID2
Assembly
GCA_000211455.3
Location
scaffold:290778-300630[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.2e-22 5.6e-19 67.6 0.0 6 89 1941 2022 1936 2022 0.93

Sequence Information

Coding Sequence
ATGGTGGTTTCCAAGGAAGGTAGAAGGCGACGCCGAGTCGCCGATCCTAGTCCCAGTCCTGCCGATACTAATGCAGCGCCAGCCAACACTAGTGTGACAACGAGCAGTACTACGCCTCCCGAACGAGAGCTGTCCCCACCGGAAATACCGAAGCGGCCGAAGGTACATGCACAGCGCAAGTTCGCCCAGGGCCAGGGTACCACCTCGTCCGCCTATCTTAACTCCTACTCGTCTGCCCCGCCAACACCGGCTAAGGATGCAGCAGGGCGGCCGAACGCGAACGGTGGTAACGGTACCGCGCTAGCGCCGGGATCATCATCGGCACCCGGTTCGGCCAGTGGCACCGGTGCACCCGGTACGCCCGATGGTGTTACTCCAACGCAGCAAATGACCGAGCTGTTGCCCAATAAGCGGCCAAACACGGAAGATTTCCTTACCTTCGTGTGCTTCCATCGCACCTCTGCGTTGCCCCCGGCTTTGGATTTTTTCAACAAATCAGCTTCCTCCGGTGGTGCCGCTGCAGCTGCCTCTACCGGTGGTCGAGGCTCAAACTCTGTGGGCGGGACCAGCAGCTCACGAGTGACCGCGGCAGCAAAACGGAAAGAAGAAAAGACACCACCGAGCGCCACCAAAGAGATCGTCACAAAGAAGGGAGACCcatcatcactagcagcatcgtcatcatcatcatcaGCTGCCGTTACCTCGGCAACGCCAGCGCCTGCTACGTACATGCCATTTGCGGTGCGCAAAAGGGCCGCCGAACCACCGGATGCTGAGTTGCGTTCCGATCGAAAGCAGCGATCCCAGGACAAGGTGCAAGCGTTGCGCAAAAAGTATCGCGATCAGCGCGTGGCCAAGCTTCGGGCAACGACCGGTAACACGAGGCCGGGTATGCGTGGTGGACCCGCGGGGACGAAAACGCGATCCGCAGCAAGCCGTGAGCGGGAGAGCACGGACGAAGGAGAGGATGCCGGTGAAGGAGCCGCCGAAGAAGAGGTAGAAGAGGAGGAGGACGAAGAAGTCGATGCTGAGGAGGGGAAGGACTCCAAGAAGGCGAAGGAAGCTGTTAAACCGAGCCCTAAGGGAACAAATATCAAGCAGGAGTCGAAGGACTCGGAACCGGAGGCAGATGGTGTAAAGGATGGAGAGGCAGACGACAAACGACAGACAGGCGCTAAGCGAAAAAGTGGTCTCCGGAGTGGCAATAGTACCGTTCAATCCGTGACTCAATCGAAAGCAAACACTAAAGTAGTAACAGCCGTTGGCAAGGAGACGCCGAGAAAGGATCAACCAACAGCGGAAGACGGAAAAGGCAAAAAATCGATTAAAAAGGAGGAATCAGTCACTGAAGAAAGCCCCAAGGGTAGCGGTGGCGCAAAGAAGGGTAGCAAAGGCGAAGAAGCGGATGGTGGCAAGCGTACGACACGGTTGTCTGCATTACGGAATCCTACAAAAGCTACGAAAGAATCGAGCTCCGAAGATGATGAACCACTGTCACGAACGGTGCCGAGCAGCGATATCGATAAGCGATCACCGGTGGAGCTGGATTTGGGTAAAACCACGCGATCCGGTCGTAGCCGTAAATCGGATCCTACCGGAGGAGGTACGGCTGCCGGTAACCGAAGCGAGAAGAAGGACGCTGGCGAAACGCAAGACAAAAAGGCGCGCCGATCGGTATCCGTGCTCAGTCGACGATCGGACGTTAGCTCGCAACCGAATGACGCTGGCGGTGGTACCAACAGTTCGGCGAAAAATGTCCGTAAAGGGGAACCGAGAGCAAAGCAACAACGAACCACCACTGAGACGGCCGGGGATGGCATGAACCATGATCCGAAGGAGGAACCTTCAACGGAACCTTCTTCATCACCGACAGCCGCCACCGGTCGAAAGCAGCCAACCGGCGCACGGAAGAAACGTGAAACGGTAGCGAAAAGAGCGGCCATCACCCCGACAACATCGGAACCGACAGAATCACGTGAGCCGCCGGAGAGTGAAAAGCGACCGAACACGGTGGTCTCGAGCGCGGCCACTACCCCGGTGGAATTGCAGCAGAGTTCCGGTCGACCGTCGAGGAAAACGAAGGAAGCGGCCACACTTTATATGGAACTAATAGGCCGCAAGTTCAATCAGGATGACAAATCCGACGATGATGATGCCTCTTCGCTAGACAGTCTCGAGCTACCGAACGTACGCCGGTTGGAGCAGATGGAAAACGAGCTCAAAAAGGCGAATGCCGGTAAGAAGGAAGCCAAGGTAACGGCCGGTGCCGCCTCCACCGTCGTTACTACGACGACGGTTGCTACCACCGGTGCCAGTGGAACGAAGAACGCGAAATCGAAGCAAACTGTGACGGGAGAAGAGGCTAAATCGAATCGACGCAAAACAAATGAGGCTCTCGCATCCAAAGGTAGCACAGGCGAAGATGAAACGGTGGGGAAGAAGTTGGAGAAAAGCTTCAGTGATTCCGACGAGGAACCGTTGGCCACTAAGTTTCAGCGGAAAAAGCAACCACAACAACGACAACCGACGGCGCAGGTAGGTGCAAAAGCAAAAGGAGCTAATGCTGCTGCAGCTGGTGGTGGAAAATCAGCAAAAAGTCCGGAAAGCAAAAAAGAGGAACTCTCGAACCAGCATCAGGCGGCACCACCAACCACACCAACCACCGGTTCAAGGGGCAAACGATCGACCGGACTCGCTTCATCGCCAGGGAAACAGAACGGAACGACACCACCTTTCACCGGTGGAGCAGTAGGCGCGGGAAGTGCAATGAAAACGCCAGTAAAAACTGGCGGTTCACGTGGTGCCACCAACAGTTCGAACCAGAACTCACCGGCTGCGACTCAGCCGATTTTGAATACCACCCAGGATCCACTGCGCAGTCCCGAGTCATCATCGACGAAGCTAAACCGTTCCGCCGACCACAATACCACGCTTCAATCGACGATCGTTGAGGCAAGCGAAAGTCCGACGAAAGTGATCCATCCGACGTTGCCAACTCCTCCTCTCCTTAATATACCGACCGTACCGGTACCGCTGAGCCGTACCGAGCCTCCACCGGGTTCACCGTTCACTCGGCAAATGGTTAAACCATCCGAGCTGATAGTACCCTCCGGTCCACTGAAAACTTCTCCACCGGGAACACTGACCGGGATTGGCTTCACTCCGGATATACCCTTCAACCGCACCGCAGGGAAGAGTGCGGAGCTGATAGCGCTCAGCAGCACGGACTTTATGAAGAGTTTTGAGGAGCATGCCGCAAGCGAAGCCGCCAAAGCGGCCACCAGCTCGCTGCTGGGTAATCTGCTGCCAAGTAAGGAGGAATCGGAAAAGATTTTCGGCATCGCTAGTGTCAGCTTGGCGCAAAGTTCGGGTCCGCTCGATACCAAGTGTACGCTGGGTAAGTGTGGATCGGTCCACAAGCCACCGCTGGGGCCGCCCGTACTGACCGAATCGCTGCTCGGCGGCCATTTGTCGCCGAGGGATCGTCGGAAGGCGAAAGTGAACATGACTCATGAACAGATACAGCGGTGGATCGATGAATCGTCCTGGTCCCCGATTGAGGACGATCTGCGCGAGGAACCGGAGATCTCGAGTGCGTCCATGAGCCGCACACCTCCGCCACCGGGTCAAACGGCCTGGGATCGGTTAACTGCATCGGAATCGAACAATCTAAATGTACCGACGGTAGTGTCCACACTGGTTACAACACCGACAACCAGCGGTTTGGTAACATCCACTCCCGTCACCAGCACACCCGTCGCAAATGCCGGTACCGGTGAAGAGATAAATGGAACCAAGACGTCAGCAGCAACAATGGTCACCCAAAGCTCACCACAGGCCACCACGGTCGGAGGAGCCATCGCACCGAAACCGACCTCGGAACTACTTGCACCGAAAGCTATAGCATCACCACCAGTCGCCACTGGTGGCCGGGGAAGCGGGAAAGGCAACGAACGGGAATCACCATTGGTTACCATAGCTACCCCGGCCGGAGGTGAAACATCCGAGGCAAATGTCACCTCTACCACGGTCGGTGGTAAGCGTGAAGCGAAGGAGTCGGAAAATCAACGaaaaaaaCTGAAACCGAACCCAACGGCTACCGCTGCCGCGGCAACTACAACACCAACGGCATCACAAACACCATCCAAATCGCAATCACCGGCCACCACGCCGACTGATCGTAAGCCAATCTATCGCACGGCAACCGGACGCACTCCGGTGTACAaacagcaacaggctcagcagcagcagcagcagcagcagcagcagcagcaacagcaacaacaacaacaacaacaacaacaacaagacactactgctgcatctaagtaccaacaatctcagcaggcgacgagcgttgctgctcaaccaaaccaccaccaaagtgtaccatcggcgaacacaacgaacacgaagatgacgacgggagcatcgcagatggcggcgatggcagctagcgccagcaacaagttcggtgCGTTCTCACCCGTTAACGAACCGAGCGTCTATTCGTTCGACAATGAAGATCAATTCATGCCAGTAGCGACACCTTTCCGGCGGCAGCATGGGCGCCGCGAGTCGTGCAATTCATCTGCTCGCGACGACCCAGCTGGCGGTCCATCGGCGTGTATCAAACGCGAACCCGCGCCTACTGCTGCATCTTCCGAGGAGTCGAAAGCAGCAGTAACAGCAGCAGCAGGAGCAATTGGTGGAGCTGTTGGTGATTCAGGGTTTCAGAAACCACCACTCGTTAGCACCGCTACGGCTGGAGGTTCTACCAAAGGACAACCATCGGTCAGTGCAAGCGTGCAACCAAATACTACGGACAATCGTAAATCGGCCGATACCGGCGGCAGGGCTAGCCGCTCCTCCGCAACGGCGGTTGCCTTGCAGGACGATACCGATAAGCTGTCCAAGACATCGACTGGAACGGGGCGTAGTCGTGAAGGGCCCGCAGCTGGAGTGAAGCTAGAACCCGAAGCACCGACGGATGATAGTGAAGCGGAAGGTCAAACGTTTTATATTCCCCTGCAAGGGCCCACCACAACCGGTGCTGCTGGTGCGAAACCGGATCAACTGATACAGGGGGTGGCGGTCAAGCTCGGTACCGAGGGACCGGATGGACCGAACCAGCGTGTAATCATGCACGCGAAGCTGGTGACCAAGGCGGAAATGGGAACAAATCCGACCACGCTGCCTGAGTCGATGAATGTGCAGGAGCTGGTAAAAAGCCTCACGGCACAGGTGGGATTAGCTGGAGCTGGCGCTGCATCCTTGGGTAAGGATGCGGGAATCATCTCCAAGCTGATGCCGATCGGTGCCATTCAACCACGCTTTAAAGCAACCGAAGGTGGTGCCTCTGCAGCGCCGGTGGAACAACGTTCCGAAGGACGAAGCAGTGTCGAACCGGTGCCTCGTCCCGGTGGTCTCTCGCGGATCAATTCCAACTCGTCACTATCATCTTCGCAGCGATCCAAACCGACGACCGGTAAAGCGATTGCGACGACATCAGCGGTTAAACAGCAACTGCCGCCGGCAAACCTACCCCAAGCGGACAACAGTACAGCGTTCCCGAGGCGTGATGAACCCGCCCAGATGGTAGAAGCACCTGTGTTTCGGCCGAGCGAGAAAGAGTTCCAGGATCCGCTCGAGTACATTGAGCGTATCGCGCCCGTCGCGTCCCGGTTCGGCATTTGTCGTATCATTCCTCCGGCCAGTTTTAAACCGGAGTGCCGCATTGCGGATGATATGCGCTTCATGGCGTACAACCAGTACGTGCACAAGATGCTGCACCGGTGGGGCCCGAGCGCGAAAGAGTACGCCGCCATTAAGAAGTATTTGGCCACGCAGAGCATCAACCTGCAGTCGCCACCGGTGATCGGTGGGATGGAGGTGGATCTGCCGCGCCTCTACCACACGGTACAGGAGCTGGGCGGATTAAAGGAGGTGATCGAGAAGAAGCGATGGGCCCGCGTGGCGGAGGATATGTGCATTCCGAAGGCTGCCCACGATCGCGTCTCGAAGCTTGACGACATCTACTGCAAGTATCTGCTACCGTACGATACGCTGTCCCACGGCGAGCGCCAGAAACTGTTCGACGAGGTTGAGGCGGATTGGGCGAAGCGGGAAGCGAAGGCGCGCCGCAATGCGGACAAGGGTGTCGGCTCGGATATCCGTACCAGCggtgaatcggacgatgacgaggagggtgaatcgaacgaggatgaggaTGAAGAGGACGAAGACGAGTGTACGATGGAGTGCATCGTAAAGGGACGGAACATGCCGCTGAAGGAGTTTTTCCGCATCGCGCGCAACACGATGTCACTGTGGTTCCGCAGTGGTGAACCGACGGTCCAGGAGATCGAGGCCGAGTACTGGCGGCATGTGGCGGTTCGTGATAGCCACGTTTGCGTTCACTCCGGTTCCATCGATTCCAGTGCGCTGGGCTTTGGCTTTCCGAGCCCGAAGGTGAAGGGATCGTCGTGTGCCAAACACCCTTGGAATCTGAAGGTTCTGACCAATAACAATGGCTCGATACTGCGCTCGTTGGGTCCGGTGATGGGCATCACGATACCGACGCTACATGTAGGCATGCTGTTCAGTGCTTGCTGCTGGTACCGCGATCCACACGGCCTGCCCTGGATCGAGTATTTGCACACCGGAGCGAATAAGATCTGGTACGGTGTGCCGGATGAACAGAATGCTAACTTCCGGGCTGCGCTAACCGTGCTCGTACCGACGCACTGTCAGAACAAAACCATCTGGCTACCGTGCGATACGGCCATGGTACCACCGCACATGCTGACCGATCGGAGCGTTTCGCTGTGCCGGACCGAGCAACAACCGGGCCAGTTCGTTGTGGTCTTCCCACGGGCGTACACTTCCAGCCTGTGCACTGGGTATGCCGTTTCGGAGAGCGTTTACTTCGCCACCAATAGCTGGCTTGATACGGCTAAGGACGATTTCCGGGATATACAGGAAAGCTGTGAACCGACCATGTTTTCCGTGGAGCAGCTGCTCTTTGCAATCGCCAATGATCAGCGCAGCAATCCGGATACGCTCGCACAGGCCTATCCGATGATTGTTGATTTCTACGAAAAAGAGAAGCAACAGCGACAGGCGCTCAAGGATCACGGTGTGACGCAGTCCGAGAAAATCGAATCGAAGAAGAAAACCGTCTCGTTGGATGAGTTTGAGTGTGAAACATGTCGTGCCAATCTGTACCTGTCGCTGGTTAAGGTTAAGGTAACGGCTGACGAGGACGATAAGGAGGACGAAGCGGGTGGCAGCAATTCGGCCGATGAAGAGGAGGAAGAGCGACTCTACTGTCTGAAGCACGCGATCAAGTATCTCGCCGACGGTCAGCTACAGACGAAACATTGCCGGCTGGCGTACACCTACTCGCTGGAGGAGATCGATGAGGTGCTGAAGAGGATGCAGGATCGCATCGCTAGCCGTAAGTCGATCAAATCGAGTGCTGCCAGTAGTAATGCCGGTGGTGGCGGCGGTGTTAGTGGAGGTGGTGCTGGAGCTGGTGCTGCAGCTACAGGTAGTGCGAGCGGCGGTGCCGGTCGTGGAAAATCGACGCTAAATCTCGCATCCACCTCATCGCAATCATCGTCATCTTACCAGGCACCAACTCACAGTAAGTTTTCCGGAATGGCAACCATGTTGAAGTAG
Protein Sequence
MVVSKEGRRRRRVADPSPSPADTNAAPANTSVTTSSTTPPERELSPPEIPKRPKVHAQRKFAQGQGTTSSAYLNSYSSAPPTPAKDAAGRPNANGGNGTALAPGSSSAPGSASGTGAPGTPDGVTPTQQMTELLPNKRPNTEDFLTFVCFHRTSALPPALDFFNKSASSGGAAAAASTGGRGSNSVGGTSSSRVTAAAKRKEEKTPPSATKEIVTKKGDPSSLAASSSSSSAAVTSATPAPATYMPFAVRKRAAEPPDAELRSDRKQRSQDKVQALRKKYRDQRVAKLRATTGNTRPGMRGGPAGTKTRSAASRERESTDEGEDAGEGAAEEEVEEEEDEEVDAEEGKDSKKAKEAVKPSPKGTNIKQESKDSEPEADGVKDGEADDKRQTGAKRKSGLRSGNSTVQSVTQSKANTKVVTAVGKETPRKDQPTAEDGKGKKSIKKEESVTEESPKGSGGAKKGSKGEEADGGKRTTRLSALRNPTKATKESSSEDDEPLSRTVPSSDIDKRSPVELDLGKTTRSGRSRKSDPTGGGTAAGNRSEKKDAGETQDKKARRSVSVLSRRSDVSSQPNDAGGGTNSSAKNVRKGEPRAKQQRTTTETAGDGMNHDPKEEPSTEPSSSPTAATGRKQPTGARKKRETVAKRAAITPTTSEPTESREPPESEKRPNTVVSSAATTPVELQQSSGRPSRKTKEAATLYMELIGRKFNQDDKSDDDDASSLDSLELPNVRRLEQMENELKKANAGKKEAKVTAGAASTVVTTTTVATTGASGTKNAKSKQTVTGEEAKSNRRKTNEALASKGSTGEDETVGKKLEKSFSDSDEEPLATKFQRKKQPQQRQPTAQVGAKAKGANAAAAGGGKSAKSPESKKEELSNQHQAAPPTTPTTGSRGKRSTGLASSPGKQNGTTPPFTGGAVGAGSAMKTPVKTGGSRGATNSSNQNSPAATQPILNTTQDPLRSPESSSTKLNRSADHNTTLQSTIVEASESPTKVIHPTLPTPPLLNIPTVPVPLSRTEPPPGSPFTRQMVKPSELIVPSGPLKTSPPGTLTGIGFTPDIPFNRTAGKSAELIALSSTDFMKSFEEHAASEAAKAATSSLLGNLLPSKEESEKIFGIASVSLAQSSGPLDTKCTLGKCGSVHKPPLGPPVLTESLLGGHLSPRDRRKAKVNMTHEQIQRWIDESSWSPIEDDLREEPEISSASMSRTPPPPGQTAWDRLTASESNNLNVPTVVSTLVTTPTTSGLVTSTPVTSTPVANAGTGEEINGTKTSAATMVTQSSPQATTVGGAIAPKPTSELLAPKAIASPPVATGGRGSGKGNERESPLVTIATPAGGETSEANVTSTTVGGKREAKESENQRKKLKPNPTATAAAATTTPTASQTPSKSQSPATTPTDRKPIYRTATGRTPVYKQQQAQQQQQQQQQQQQQQQQQQQQQQQDTTAASKYQQSQQATSVAAQPNHHQSVPSANTTNTKMTTGASQMAAMAASASNKFGAFSPVNEPSVYSFDNEDQFMPVATPFRRQHGRRESCNSSARDDPAGGPSACIKREPAPTAASSEESKAAVTAAAGAIGGAVGDSGFQKPPLVSTATAGGSTKGQPSVSASVQPNTTDNRKSADTGGRASRSSATAVALQDDTDKLSKTSTGTGRSREGPAAGVKLEPEAPTDDSEAEGQTFYIPLQGPTTTGAAGAKPDQLIQGVAVKLGTEGPDGPNQRVIMHAKLVTKAEMGTNPTTLPESMNVQELVKSLTAQVGLAGAGAASLGKDAGIISKLMPIGAIQPRFKATEGGASAAPVEQRSEGRSSVEPVPRPGGLSRINSNSSLSSSQRSKPTTGKAIATTSAVKQQLPPANLPQADNSTAFPRRDEPAQMVEAPVFRPSEKEFQDPLEYIERIAPVASRFGICRIIPPASFKPECRIADDMRFMAYNQYVHKMLHRWGPSAKEYAAIKKYLATQSINLQSPPVIGGMEVDLPRLYHTVQELGGLKEVIEKKRWARVAEDMCIPKAAHDRVSKLDDIYCKYLLPYDTLSHGERQKLFDEVEADWAKREAKARRNADKGVGSDIRTSGESDDDEEGESNEDEDEEDEDECTMECIVKGRNMPLKEFFRIARNTMSLWFRSGEPTVQEIEAEYWRHVAVRDSHVCVHSGSIDSSALGFGFPSPKVKGSSCAKHPWNLKVLTNNNGSILRSLGPVMGITIPTLHVGMLFSACCWYRDPHGLPWIEYLHTGANKIWYGVPDEQNANFRAALTVLVPTHCQNKTIWLPCDTAMVPPHMLTDRSVSLCRTEQQPGQFVVVFPRAYTSSLCTGYAVSESVYFATNSWLDTAKDDFRDIQESCEPTMFSVEQLLFAIANDQRSNPDTLAQAYPMIVDFYEKEKQQRQALKDHGVTQSEKIESKKKTVSLDEFECETCRANLYLSLVKVKVTADEDDKEDEAGGSNSADEEEEERLYCLKHAIKYLADGQLQTKHCRLAYTYSLEEIDEVLKRMQDRIASRKSIKSSAASSNAGGGGGVSGGGAGAGAAATGSASGGAGRGKSTLNLASTSSQSSSSYQAPTHSKFSGMATMLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00092637;
90% Identity
-
80% Identity
-