Basic Information

Gene Symbol
Arid4b_1
Assembly
GCA_000211455.3
Location
scaffold:17969-27940[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-27 2e-24 85.0 0.3 1 89 299 385 299 385 0.96

Sequence Information

Coding Sequence
ATGCAGCAAGTAGACGATCCGCCCTATTTAACCGTCGGGACGGAGGTCAGCGCCAAGTACAAGGGAGCGTTCTGTGAGGCGAAAGTGCGCAAGGTGGTGCGGAACATCAAGTGCAAGGTCGCGTACAAACAGCAGGGCCTCGGGTCGGGCGTCGTGTCCGATGACCAGATCAAAGGGGCACTGCGTGTCGGGGCCACGGTCGAGGTACGCCATCCGGAGCGCAAAGAGTACGTCGAGGCTACGCTGACCAAGATCCAGGACTGCTCGCAGTACACGGTCGTGTTCGACGATGGCGACATCACCACCCTCCGCCGCAGTGCACTCTGTCTCAAGAGTGGCCGGCACTTCAACGAGAGTGAAACGCTCGATCAGCTTCCGCTCACGCACCCGGAGCACTTCGGCAATCCCGTCATCGGTGGGCGCAGGGGGCGAAGATCAAGGCATCTGCTGCCGGATGATAGCTCAGATGAGGACGATGAACCGGCCACACATTCGCGATCGGCTGCTAGCGATAAGGAGGAGAACATCGGCAAGGTGGTGTGCGTCGAGACGAGCGATAATAAGAAGAAAAATCCCAAAGAGAACTGGTTTCCGGGCCTGGTCGTGGCACCGACGGCCCAGGATACGGTGCGCATCCGGGTGAAGGATGAATATCTAGTGCGCTCCTTCAAAGATGGCCGGTACTACACCGTCCCGAAGAAAGAAACGACTGAGTTTACGCGCGACAGTGTAAACCGATCGGAAGCGACCGCCGTATCAGCCGCGATCGAGTACATGGACAACGATGTACTGCCACCGCACTGGGATCGGGAAGCCCTCTTTGGGATGGCCGGAAGTTGTAGCGATTCGGATCAGGAGCTCGAAACTGACAGCTCGGATGATGAGCCAACCGAGGAGAAGGATCACTTCGTCGCTCAGCTGTACAAGTTCATGGACGATCGCGGTACGCCCCTCAACAAGGTCCCCTCCATCATCAACCGGGACGTGAATCTGTATCGGTTGTTCCGTGCGGTGCAGAAACTGCACGGCTACAACCGTGTCACGAGTCAGAACCAGTGGAAGCAGATTGCGATCCGTCTCGGTTACCAGCCGGCCACCGTCAGCATCACGAATCTGGTGAAACAAGCGTACAAGAAGTATCTGTTCTCGTTCGAGGAGTTCAACCGGAAGCTAGGCTGCACGATGGTGCCCCATCCGAAGACAAGCCGCACCAAGGGCCGTAGCTTAGTGCGGGCCAGTCTAGTGCAATCACCGAAGTTACCAGAGAAAGAGGTGAAACTAACGGCTAAGGAGCGGGCAGCGGCCgctgctgcggcttcggctgctgctgctgcCGCCACAAGTACCACCAACGCTTCCTCAGGTAGCTCCAGTTCAGCGGGAGCCGATGCAGCAGCCGTGGATGAATCGGGCAACACGAGCGAATCCAGTACTGCGGAGAGTGCCACGGCGCTAAGGCCAACAACCACAACGGCCACCGCCAGCAGCAAACGCAAGATCGGTGGCAAGGTAAAGGCACTAGTCGACAGGTTTGAGGAGAAGGACACACCTAGGTCGAGCAGCAGCGAATCGAAAGATCGCAAGGATCGCGATTTGGACAAGCCACTGTCACAATTGATCGCTTCGAAAGCTAGTGGAGATACCGGTTCTGGAGGACGCAAGGATGACAGTAGCTCGACAGCCACAAGCTCGACTACTGCGACTACTGCTGCTGCTACCACTAGTTCGGCAAAGAAAGAGAAAGGTGGTCCAGGTGGAGCTAAAGCGTTGCCTAGCAGCGGCAGTGGAGTAAAGGTCGTTGAAACACTCGCAGAAAAGCGTGGCCGCAAGCGCAAGGATGCGGACTCGGTTGACTCGAAGAAAGATGATCGTGATTCGGTTGGAACGGCATCTTCTTCTTCCTCCTCGGGCAGTACGAGCGGTGGCAGCTCCAACGCCAATCCGACCGCCGGTACCTCGCCAAGTACGAAGCCAGAAAAGCTTTCATCATCTGCAAGTTCCAGTGGAGGTCCTGGTGGCGGTGGTGATGGTAATCGGCTTGTTCATGGTAATGTAGGAGGTGGTCCACCCGGTGGTGGAAGTCGTACGGCTAGCCCGCATAGTAGTGCCACGACTCCCGACTTCCCCATCGAAGCAGGCGATAAGCTAAAGGTGTACTACGATGAGCAGAAGGTAACGTACGAAGCAAAGGTGATCGAAATCGCCATCCAAGAAGGCAGTCCCATCTACCTGGTACACTACACTGGATGGAACACACGGTACGACGAGTGGGTCCGTAAGGAGCGCATTGCCGAAAACCTGACGAATAGCAAACAAACGAAGAAAGGCAAATCGTTGTCATCGTCGTCGTCATCGGGTAGCTCGTTACACAACAACAATGTGGCCACCGGTAAATCCGGTTCCAGTGGACCGAACCCTGTGTCCTCGGGCGACAAAACGCCCAAACTCGGTAAACGTATGCGGGGTAATTCTAATTCAGGTGGCGGTTTGACTCCGCGCTCGACAACACCGAACATTGGACGGACGAAATCACCGGCCTCGACACCCTCGAATCGACGTCCACTGACACGTGGAGGTGGTGGTGGTGGTACGGCCGCGTCAGCCGGCGGTGCTGGTCAATCGATCTCCTCTTCCACGACGGCGGCCGGTCGCCGTACGTCGAACAATACCGACATCTCATCTTCGCTGTCCGTACCGACCGATCCGGATAGTGATAGCGATTCCGACGAGCCGATGATGAAAAAGTGCACCACCAACAGCTCCACCTCGTCGACCACCTCGTCCAATTCGTCCATCTCGATCTCGTCGACGAGCACGAAAATCCGATCCGAGCTGAAGGGTTTTAAGGAACTAAAATCACCGGGATCACCGGCATCTGATACTACCacgacgacgacgacgacCACCACCACTGCCCCCGGTGACGGTACTACAACAGGAGCAGCAGCTGGTGGTGGTGGTGCACCAGCGTCCTCCACTAGCAATCCTTCATCTAACGTGACAGTTGAAGGTAGCGCAGCACCAGCAACAGGTCGGCAGAAAGGGCAGCTTAAGACGGGAACGCTGAAACGGGGCTCTCCCGGCCATAGCGTAGTGAAAGAGGAAGAATCGACCGTCACGGAGGAAGAGGAAGAGGACGAACCGGCAAAATCGTCCGAATCGGAGCAAACACTGAGCGAAGAGGACTCGTCACAGTCTTCGAACAAAGCCTTCTCCAGCTCACCAATCACGACCATGGTAGATTCGGATACAGCGGAAACGCCACTCATTGCCGGTGCTGCCAGCACCGCGATGAGTCCCAAGTCCCTAGATCGTGACCACcagcagcagcagcagcagcTTCAGGACGATTCTTCTTCCAACGACGTACCACTTGTGGTACGGGGTGCAAGTTCCACTATCGGCTCGACCAGTGGCGCCGATGTTAAGAGTGCACCGATCAGCGTAAAGCAGGAGCCACCCGATGATGGAACGAAAGTAAAGTGTGAGGCGGATGCAGCGGACGCGTTGAATGCAAAACCACCGATGAAAACGTACGGTACGGCCGCTACCATCATTGCCAACTCGGAGAAGAtggcattctgcagcttgcgtgatgttagcgcagaaggaggaacagcaacagcagcagcagcagcagctgctgcaacgagcagcaTAAAATCGGAGGATCCCTCGACGGAAGCAACCTCGAAAGAGGGGAAAGTGAGCATGGAACCACCAGCGACCGCAGACACACAGGCGGCAATGAAAACGACGAAAAAGGAAACAGATTGCGACGACAAGAAGCCCCTTTCGTCCTTTGTGTCGAGTAAGGTCGGGTCCTTATCACCTGCTTCAAATCCTCAGGCGAAACCGGTAGTAATGGTAGTATCGGCGGCGACAGTGAAGAGCGAAAGCATGATCATCGCCACAGGATCAACGCCACACAGCGTTATTACGACTGCGTCCGCCGCGATCGTTGGATCCGCCGGTGGTGCTCAGGCCAAGATGCTGAAGGTCTCTTCTTCCTCTACGTCACCACCCAAGTCGACTACGACAGAGATTACCGGAGAAAACGCGAGCTCAGTGATCATCAGCAAATCGCCGTTATCCTCCAGTACGATCACTGGCGGCGTGGTGTCAACGCCAACCGCTCCCCTGTCGATGGCTCACGCGGCCGGCAGTAGTAGCGCCACACTGGCCGCACTACGTGCCGAGAAGAAGCTCCTTAACCCGGCCAATACAACGCTCTCGTCCTCCGCAATCACGTCGTCATCGCTGTTTGGTGAGAAGAAGGGCTCACTGGGCACCAGCACGTCGGGCATACCCGGAACGAAAGGATTGGCTGGTGCACCGATGGCGGAGAAGAAACACTTTTCCTCTTCCAGCACGCTTACGCCAGCCCAGAACAAGCTGCTCAGTAAGGAAGCGCTGTCGATCAAATCGATCTTCGAATCGTCGGCGGCCACCCGGATGGACGAGAAGATCTCGGATATTTACGAGTTCAAGGAGGCCGAAGATGAGTTCGATGAACAGGAACAGGGAACGACGGGATCATCGACTCGGAAGCTCGTATCCGATGTTCCACCGGCTGAAGTAGTTAGCTCGCTGACACTGGCATCCGCGGCTGGCTCAACCGCTTCCACCACCGGCAGTGGATTGCTGCTGGACGATAAGCGGAAGAAACCATTGCAACGCAAAATGCCACACACGGAACTACTGATGCCATCCGAGCCGTCGACCGGTGCAGCAGGAACAGGAAGCAGTTTCGGTGGAATGAAGCGAATGAAGAAGGTATCGCCAATTAAACCGACGGACACGGGAACCACTCTTGGCGCAGGTGATGCGTTAGTGAAACCAACTAAAGGACCCATGCGCCGTCCGGAAGTGAAGGAAAAGGACGATCAACAGAAATTAGGTGCCAGTGCGAGTGGAGCATCTGAGCAGCAGACTATCGTCATTAGCGCTGACAAGTCGTCAACACCGCAGAAGGCGACCGTTACACCTGTCTCGACTGGAGTCGTGCAGATGTCTACTGCTGGCTCGGTAACAGCAATGGCGGGAGGTGGTGGTGGTGCTGCTGCCGCTACTTCTAACGTTGCAATAACGACCACACCGTTACGGTTTGATTCAACGTTTGATGTTCTCCGGAAATCACCGAGCTTCAATTTGGTCAGCGTACCGGGACAACAAGGTGCTTCTGGTGCTGCTGGTGCCAAAGAGGATTCATCCCGCGAGGAAGCGGATATTAAACCGGCGCATCCAACACCAACGTTGCCTGGTATCTTCACACCCGTTGGCACGATCACTGGCGCAGGAACAGGAGGAGGTGGAGGAGCTGGGTCATCCGGTGCATTACTAGCGTCGAGTAGTGCGTTGGATCGTTCCGGAGGCACCTCCACGTTGCTGTTGGGCAAAGGATCTTCCCCGTCCGCTGCCGTCCTGCTGGCAATGGCGGGTAATGATGATAAGCAGAAGGAAGAACCGACGCTGGAGAACTGCAAGAAGTACTTCAACGATATGAACTTTGAGTTCGATGCACCGACGGTGAAAAAGCCGCCCTCGATTGCCGATAAGGTGCTGAAGGCGCtcagccaacagcagcagcagcaacagcagcaacagcaacagcagcatTCCCCGGCGATCAAACAAGAGAAACCAGATCATGTGACGCTAAAGTACATGCCAATGCATCACCATTCGCCGCTACACAGTAAACCGTATGTCGTGAACACTAGCGCGACCGCAAGTGGAGGAGCCGCACAAGAATCTTTAGCCAACGTCGTGTCATCCGCTGCTACGATCGTACCTGTAACCGGTGGTGTGACTGTATCACACACACCGATCAAGCTGGAATCAACGCATTCCAGTGTGGTCGCATCGACGAAATCACCAGCCTCAGGCATATCGTCCACCGAACCACATCAAGCCACCGCGTTGGTATCTGCTACGCTCAAAAAGGAATCGGAACCGTCGCTCGATGGAACGGTGAAGGTGGTGACGCCCGGTAAAATCAGTCAGCTGACTGTCGTCAGCGGTGGTGGACCTAAACACTCATCCGCGTTACCATCCGGTGGGCCACAACTATCGTCGAGCACGGCTCACCGGCTGCTGGATCACATGCTACCGACAGCACGAAGCAGTAACGATTTGACCGAATCGATCCGGAAGCTGGATGATCCACGGTTCCTGCACGATGACGAATCGACCGATAGCAACGATTCCGAGCATCGGCTCATCATTGAGGATGCGGAATCGCAGGGCAGTGGGGAACCATTGCCACCGCCTGGAGGAGCGATACAACATCCCAGCAGCAATAGCAGCACGAGCTCGACCACCACCACAAGCACACCCACCGTAGCGTCGGGCCTTCCCTCCGGAACAACGGCATTGATCGTCCGCTACGATCACCCAACGAAGCACCAGACGACGAATGTTATCGCCAAGCGAGAACTGTTTGATGATAAACCACCGGTAACGGCGTCCGCAGCAGCAGCAGCATCGCGCGGTACGACATCTGGATCGTCGATCACGCACGAGATGGCATCGGCTGCTTCGGCAGCGGCCGTTGCCGCCGTTGCCGAGAAGGAGAAGATCGTGTTCCGTCAAGACCAAGCCGTCTCCGTGTCCGGCAGCAACAAGGAATCTCCTGGCTCACAGTCGCAGTCGCAAACCGTACGCACGTCCATGTCCTCTAGTGCGCCAACTGGAGGTAGGGAGATCGAAAAGAAACTATCCGGCGGTGCGAAGCATAACATTCTGGAAACGATCATACAGAGTGAGCTAAACACGGTGAACCGTGGTCTCGGATCGGAGAGCTTCCTTAAGCTGAAAGAACAAACGGAACATCAGGCAGAACTGGATCGTTTGCAGCAACAACAGGCACAGCAGCAACAAATGGTTGCCGCTTCATGCGCTACCAGCTCGGTACCACCTTCTACCTCATCGACCGCAACGTCGGGAACAAGCATTCAAGCAGATCCACTTGCAATCGATGATAAgtcatcactgcagcagcagcagcagcagcagcaacagcaacagcaacagcagcaacaacaggccaacaatgaaTCTCTCTCACTGTTGCTGTGCGAAGAAACGATTCCGGGTTCACCGGCACCGAAGGATCAGGATCGGTTGCCACCGGTCAATACGGGGCGTAAGGTGTACGCGGAGACACCGCTCGGTGTTTCGTCCACCTTCCTAGCACCGCCACTACAAAACATGCAGACGGCGGCCACCGACCTGAAGCCGGTACCGATGGACCTTGAACCGCCCGTCGTAACGATTACGATCGCTGGTAACACCACGATCAGCAGCACCAGCCAAGCTGGTGCAGCTCAAGCGGCTGCTGCAGCGGCCACATCGGCACCTTTCTCTAGCTCCACGCAAGGAGCACAATCGGTGCGCACCGTCACGGCACCTTCAGCGGTCACGGTGAGTGGTGGTGGTGCTGCTGGCAAGAATTTGAATGCCACCGGTGGTGGTGGTGAATCGGCCGTGGATACACCGAACAGTTCCCCTCGTGATTCAGTGAGCCAGGACGAGACACACGATCCGGAAGCATCGATATCGCCGCTGAAGAAGCGCCGGCAGCGCAAGCCAAGCGAAGACCCGCCAAGCCACAAACGACACCGTCGTGCGGCACCCTCGAGCTTCGGCggtggtggtggtggtggATATAGCAGCGCCAATAATGGTTCCAGCAGCGGATACGGTCGCAGTCAGCGGGGTGGCATGACCACAGCGAATGCTTCGGATAGTGAGGATAACTCGGACTCGTTGGCTGCCTTCCATCGATCTGCCTCGTCAGTGGTACTCGGTAAATCGGGTCGCACGGGTCAATACAACTTCCTGGTGAACTTGGATCCCAGCCTGAACAACAACCAGCGGATAGCGATACTGAAGAAGAAGATCCAGGAGCTGCGCAAAACGTACAACGCCATCAAGGCGGAACTGGCGAGCATCGATCGGCGGCGCAAGAAGCTGCGGAGGCGCGAGCGTGAAAACAAAAAGCAAGCCAAGCTTAACAGCGCCAATGCGGCAAACAATTAG
Protein Sequence
MQQVDDPPYLTVGTEVSAKYKGAFCEAKVRKVVRNIKCKVAYKQQGLGSGVVSDDQIKGALRVGATVEVRHPERKEYVEATLTKIQDCSQYTVVFDDGDITTLRRSALCLKSGRHFNESETLDQLPLTHPEHFGNPVIGGRRGRRSRHLLPDDSSDEDDEPATHSRSAASDKEENIGKVVCVETSDNKKKNPKENWFPGLVVAPTAQDTVRIRVKDEYLVRSFKDGRYYTVPKKETTEFTRDSVNRSEATAVSAAIEYMDNDVLPPHWDREALFGMAGSCSDSDQELETDSSDDEPTEEKDHFVAQLYKFMDDRGTPLNKVPSIINRDVNLYRLFRAVQKLHGYNRVTSQNQWKQIAIRLGYQPATVSITNLVKQAYKKYLFSFEEFNRKLGCTMVPHPKTSRTKGRSLVRASLVQSPKLPEKEVKLTAKERAAAAAAASAAAAAATSTTNASSGSSSSAGADAAAVDESGNTSESSTAESATALRPTTTTATASSKRKIGGKVKALVDRFEEKDTPRSSSSESKDRKDRDLDKPLSQLIASKASGDTGSGGRKDDSSSTATSSTTATTAAATTSSAKKEKGGPGGAKALPSSGSGVKVVETLAEKRGRKRKDADSVDSKKDDRDSVGTASSSSSSGSTSGGSSNANPTAGTSPSTKPEKLSSSASSSGGPGGGGDGNRLVHGNVGGGPPGGGSRTASPHSSATTPDFPIEAGDKLKVYYDEQKVTYEAKVIEIAIQEGSPIYLVHYTGWNTRYDEWVRKERIAENLTNSKQTKKGKSLSSSSSSGSSLHNNNVATGKSGSSGPNPVSSGDKTPKLGKRMRGNSNSGGGLTPRSTTPNIGRTKSPASTPSNRRPLTRGGGGGGTAASAGGAGQSISSSTTAAGRRTSNNTDISSSLSVPTDPDSDSDSDEPMMKKCTTNSSTSSTTSSNSSISISSTSTKIRSELKGFKELKSPGSPASDTTTTTTTTTTTAPGDGTTTGAAAGGGGAPASSTSNPSSNVTVEGSAAPATGRQKGQLKTGTLKRGSPGHSVVKEEESTVTEEEEEDEPAKSSESEQTLSEEDSSQSSNKAFSSSPITTMVDSDTAETPLIAGAASTAMSPKSLDRDHQQQQQQLQDDSSSNDVPLVVRGASSTIGSTSGADVKSAPISVKQEPPDDGTKVKCEADAADALNAKPPMKTYGTAATIIANSEKMAFCSLRDVSAEGGTATAAAAAAAATSSIKSEDPSTEATSKEGKVSMEPPATADTQAAMKTTKKETDCDDKKPLSSFVSSKVGSLSPASNPQAKPVVMVVSAATVKSESMIIATGSTPHSVITTASAAIVGSAGGAQAKMLKVSSSSTSPPKSTTTEITGENASSVIISKSPLSSSTITGGVVSTPTAPLSMAHAAGSSSATLAALRAEKKLLNPANTTLSSSAITSSSLFGEKKGSLGTSTSGIPGTKGLAGAPMAEKKHFSSSSTLTPAQNKLLSKEALSIKSIFESSAATRMDEKISDIYEFKEAEDEFDEQEQGTTGSSTRKLVSDVPPAEVVSSLTLASAAGSTASTTGSGLLLDDKRKKPLQRKMPHTELLMPSEPSTGAAGTGSSFGGMKRMKKVSPIKPTDTGTTLGAGDALVKPTKGPMRRPEVKEKDDQQKLGASASGASEQQTIVISADKSSTPQKATVTPVSTGVVQMSTAGSVTAMAGGGGGAAAATSNVAITTTPLRFDSTFDVLRKSPSFNLVSVPGQQGASGAAGAKEDSSREEADIKPAHPTPTLPGIFTPVGTITGAGTGGGGGAGSSGALLASSSALDRSGGTSTLLLGKGSSPSAAVLLAMAGNDDKQKEEPTLENCKKYFNDMNFEFDAPTVKKPPSIADKVLKALSQQQQQQQQQQQQQHSPAIKQEKPDHVTLKYMPMHHHSPLHSKPYVVNTSATASGGAAQESLANVVSSAATIVPVTGGVTVSHTPIKLESTHSSVVASTKSPASGISSTEPHQATALVSATLKKESEPSLDGTVKVVTPGKISQLTVVSGGGPKHSSALPSGGPQLSSSTAHRLLDHMLPTARSSNDLTESIRKLDDPRFLHDDESTDSNDSEHRLIIEDAESQGSGEPLPPPGGAIQHPSSNSSTSSTTTTSTPTVASGLPSGTTALIVRYDHPTKHQTTNVIAKRELFDDKPPVTASAAAAASRGTTSGSSITHEMASAASAAAVAAVAEKEKIVFRQDQAVSVSGSNKESPGSQSQSQTVRTSMSSSAPTGGREIEKKLSGGAKHNILETIIQSELNTVNRGLGSESFLKLKEQTEHQAELDRLQQQQAQQQQMVAASCATSSVPPSTSSTATSGTSIQADPLAIDDKSSLQQQQQQQQQQQQQQQQQANNESLSLLLCEETIPGSPAPKDQDRLPPVNTGRKVYAETPLGVSSTFLAPPLQNMQTAATDLKPVPMDLEPPVVTITIAGNTTISSTSQAGAAQAAAAAATSAPFSSSTQGAQSVRTVTAPSAVTVSGGGAAGKNLNATGGGGESAVDTPNSSPRDSVSQDETHDPEASISPLKKRRQRKPSEDPPSHKRHRRAAPSSFGGGGGGGYSSANNGSSSGYGRSQRGGMTTANASDSEDNSDSLAAFHRSASSVVLGKSGRTGQYNFLVNLDPSLNNNQRIAILKKKIQELRKTYNAIKAELASIDRRRKKLRRRERENKKQAKLNSANAANN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00092634;
90% Identity
-
80% Identity
-