Acul005727.1
Basic Information
- Insect
- Anopheles culicifacies
- Gene Symbol
- -
- Assembly
- GCA_000473375.1
- Location
- AXCM01000793:4296-6119[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.7 3.9e+02 1.5 0.9 2 23 230 252 229 252 0.90 2 10 0.39 23 5.4 1.2 6 23 261 278 261 278 0.96 3 10 1.2e-05 0.00071 19.6 1.4 2 23 285 307 284 307 0.95 4 10 0.0043 0.25 11.6 5.6 1 23 315 337 315 337 0.98 5 10 0.0011 0.064 13.4 0.1 3 23 342 363 340 363 0.94 6 10 0.00019 0.011 15.8 1.6 1 23 369 391 369 391 0.96 7 10 0.86 50 4.3 0.2 2 23 401 423 400 423 0.93 8 10 0.0011 0.065 13.4 1.3 1 23 430 453 430 453 0.97 9 10 3.8e-05 0.0022 18.0 0.4 1 23 458 481 458 481 0.92 10 10 0.00081 0.047 13.9 1.1 1 23 487 510 487 510 0.96
Sequence Information
- Coding Sequence
- ATGGACGAAAAGTGTCGATTATGTTTGATTCAACTGGCAGACCACAAAGCAAAGGCCTCGATCGAAGAGGATCAATTCAGTACAAAGCTTAAAACCCTCTTCAGTTTTCCGATCACATCAATCGAAACATTTCCCTCGTCGGTGTGCGTACAATGTGAGGAAAAGGTGACGGATTTTCATTCCTACCATGAGCTAGTTAAGAACAATCAGGATCAACTGTGGGCCACACAGCAGCACAAATGTTTCGTGGAAATCAAGGTAGAACCAGCCCAGGGCGTAGATTACGATGTATTTGAGTTGCCGTTTGAGGATGCGGAACCCGACAAAGAAACACAACCAACAGATAGCTACAAAGCGGAAAAGTTTACCAAGAGCGACGATGATCACCATGTCCTCGACAGCGAGCAGGACGAGGAGAACTACGAGGAAGACACGGGGAGGTTCGACGATGAAGATCCGCCAAGCAGTGCGGGCAACCGATCAGACGACAGTGAATATGAGGAGAACACACCACAGAAAAGGTCACAAACGAGCAAGACGCAATCCACACGTTTGGTGCAGAAACGGAGAGGTCGTCCGCGTAAGGGTGAGACGATAAAAAGAAACACCCAAAACAAGACTACCACGACGCGACGGTGCCAACCGACGGAAGAAACCAACAAGCGTTTGCAGGAATTCTACGACATGAAGTGTGAGCTTTGCGAGGACAAGCTAGAATCCTTCACGGCACTGAAGAACCACTACTTCAAGCAGCACGGTGTGCAAGGTTACATCAAGTGCTGCGGTCGTACATTTCACAGTCGCTATCGGTTGCTGGAACACGTGTCCTACCACGTCGGTGCAAGCATGGTCCGGTGTGACGTTTGTAACAAAAGTTTCAGCAGCCGCAGCTATCTGCTGGTACACAAAAGCCGGAAACACGGCCAGGCGGAGGATCGACCGTACAAATGCACCCAATGTCACCAATCGTACGCGATGGAATGTCACCTGAAGGCGCACATTGTCTCGCATGTGCGGGTAAACTGTACGATTTGTGGTAAGCAACTGGCCAGCGCACTGTCTCTCCGAACGCACATGATTAATATGCACGCGAAGCGGGAAAATCACATTTGCGACAGCTGTGGTCGAGAGTTCCGAAGCCGGCAAGCATTCGAGCGGCACGTAAAGCTCCACCAGGGGCTGGAAGTGACGGAGCAGGTGCAGTGTGAGGTGTGCCTCAAGTGGCTTAACAGCAAACGAGCACTGAAGATGCACGTCAAGCTGGTACACATGGAGGCGGGCCAAACGTTTCAGTGCGACATATGTTCGCAACGGTGTCCAAACAGTCGTGCTCTTGCGAGTCACAAGCAGCGCGTACACGTGGAGGAACGCTTTAAGTGTGAGGAGTGTGGCAAACTGTTCAAGCGGCAGCTTTATCTGAAGGAACACGTGGCAGCATTGCACACCCGCAAGCCGCTCTACTCGTGCGAGGTGTGTGGCGCTACGTTCAACTCGAACGCCAACAAGTATTCCCACCGGAAGAATAAGCATCCAGTTGAGTGGGAAGCGCGCCGGAAGCAACAATTGCAACAGCAACAAGAACAGCTGCAACAGCATCTGCAGGGCCAGGAAGAACTGCTGGGCCAAAAGGCTGCTTGTGTAGAGATTCAGATGGTTTAA
- Protein Sequence
- MDEKCRLCLIQLADHKAKASIEEDQFSTKLKTLFSFPITSIETFPSSVCVQCEEKVTDFHSYHELVKNNQDQLWATQQHKCFVEIKVEPAQGVDYDVFELPFEDAEPDKETQPTDSYKAEKFTKSDDDHHVLDSEQDEENYEEDTGRFDDEDPPSSAGNRSDDSEYEENTPQKRSQTSKTQSTRLVQKRRGRPRKGETIKRNTQNKTTTTRRCQPTEETNKRLQEFYDMKCELCEDKLESFTALKNHYFKQHGVQGYIKCCGRTFHSRYRLLEHVSYHVGASMVRCDVCNKSFSSRSYLLVHKSRKHGQAEDRPYKCTQCHQSYAMECHLKAHIVSHVRVNCTICGKQLASALSLRTHMINMHAKRENHICDSCGREFRSRQAFERHVKLHQGLEVTEQVQCEVCLKWLNSKRALKMHVKLVHMEAGQTFQCDICSQRCPNSRALASHKQRVHVEERFKCEECGKLFKRQLYLKEHVAALHTRKPLYSCEVCGATFNSNANKYSHRKNKHPVEWEARRKQQLQQQQEQLQQHLQGQEELLGQKAACVEIQMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00105374;
- 90% Identity
- -
- 80% Identity
- -