Basic Information

Gene Symbol
Rreb1
Assembly
GCA_000473375.1
Location
AXCM01000244:19033-26935[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00078 0.045 13.9 0.3 1 23 94 116 94 116 0.98
2 14 0.00044 0.025 14.7 0.9 1 23 132 154 132 154 0.97
3 14 1.6e-05 0.00091 19.2 5.2 1 23 160 182 160 182 0.98
4 14 0.15 8.8 6.7 4.4 2 21 401 420 401 421 0.94
5 14 7.6 4.4e+02 1.4 0.8 1 19 466 484 466 486 0.86
6 14 0.0054 0.31 11.3 0.1 1 23 727 749 727 749 0.98
7 14 3.5e-06 0.00021 21.3 0.6 1 23 758 780 758 780 0.99
8 14 0.002 0.11 12.7 2.3 1 23 786 809 786 809 0.97
9 14 0.0011 0.066 13.4 2.1 1 23 1362 1385 1362 1385 0.95
10 14 0.0001 0.006 16.7 0.3 2 23 1865 1886 1864 1886 0.97
11 14 0.53 31 5.0 5.4 1 23 1892 1915 1892 1915 0.96
12 14 6.8 3.9e+02 1.5 1.9 1 23 2125 2148 2125 2148 0.82
13 14 0.014 0.83 9.9 0.6 3 23 2207 2227 2205 2227 0.95
14 14 0.00085 0.049 13.8 5.1 1 23 2233 2255 2233 2255 0.99

Sequence Information

Coding Sequence
ATGGAAGCCGAAAGTGATAGTGCAGGAGTTACCAGTGTTGCCGCACCAACCAATGCTGTCACCGGTACCGGCACATCGGACAGATATACGCGGGCGGTGGTAAAGGTCGAAACACCGGAACCGGCAACAGAATCACCGACCAGCGAAACAGAGACCACAGCCAACCAGCCAATCCCAGATATGGATGCAGGGGAGGAGGTATCGCCTCTGGACGTTGGCAAAAACGTATCTCCAGTTGCCGTTGAACAGACGACGGTTGCGTCCGATACGGGGAAACGGTACATCTGCCCCATCTGTGACTGTGTGTCGCCGACCCAGCGTGCCTTTACAGATCACATCCGTCTCCACAATGCCGAGTCCGAGTCGGCGGCGACGGCCGTTGCATCAGTCAGCTTTTGCTGCAAAATCTGCTCCAAGGTGCTATCGTCGGCGTCATCGCTCGATCGGCACGTGTTGGTACATACGGGCGAACGGCCGTTCAACTGCAAGTACTGCAGCCTCACGTTTACCACCAACGGGAACATGCATCGTCACATGCGCACCCACAAGTACCCATCCGGACGTGACAGCTTCGAGAGTGATGCtggtggtggtggtgttggtactggtggaggtggtTCATCGTCCGACGGTAGTGGAGGTGGAGCAAACAAGACTGTTCGGAACAGTGGCCGGGGATCGGGTCACGGTAGTTCAGCAGCAGCCACAAATCGGCATTATCGAAAGAAAAAGGAAGAAGAACCGGAGGAAGATGAAGACGCCGACGAGGAAGATGACTATGGGCAGCCAAAGAAGAAGAAGCGTGCACTGCTCGATGGTGGTGATGAGCAGGACGAGGATGAGCTAATGGATGAACAGACGAGTAGTAACCGGCGTCGTCGCAAGGAGCACCATCTAATTATGAACACTGACATGGAGGAGCAGCAACATGAACATCATCGAGAGGAAGCAAACGAGGATGACGGTGAATTTGAAGTAGAGGAGCTGAGCGGTGGCAAACGCAAGGCAACATTGAGTAGTGGTGGAAGTGAACGAGCCCAACAATATCGTAAGGTGCGGACGATCAACAACAATCTGCTGGAAGGATCGGTGGTCGAAAGTGGTCAACGATACTGTTGCCCGGTTTGCGTGCGAAATGACTTTGCGAGCATGATCAGTCTGGAACAGCACCTGGACCGGGAACATCCGAACATACCGGCTAAGTGCCGTCACTGCGAAATCATGTTCCGCAGTCACAAGGCATTGAATGCGCACCGATGCAGCTATAACAACTACCAAAACATAACGCCCGGCTTCAAGGATCTCACCTTTGTAGACTTTTCTAGCGAAAAGTTCCCGCTGATCGCCAAGAACATGTGCGAGCAGACCATCCGGACACCGGTGACGAGTCAAAAGTACGAATGCACCCGATGCTATCGAGCATTCCCGTGCTCCAAGACGCTCTCGATGCATGCGGCCGATTGTTGCAGTGGGGGAGTTGGTGGTGGCAGCAGTGAAAGGGCAACCGGCAGACAGAGGCGCAAGCGGGCACCGAGTGAGTCAGACTCGTCGGATGTGTCCGGCTCTGATATGGGTTCGTGTTACGACGATCGCAACAATCGCTCGTACGATGATGAACGGCATCCACgcaatcaacagcagcagcaacagcaacatcagcagcagcatgtacagcagcagGGTCATCTGCGTCGGGAAGATTTCTTTGCCAACTTGGATCTACAAAACCGTCCGGTAGGTACGTTTTCGGAGGCACCCACGACACCGTCATCGCTGGACAAATCGTTCTCTTCACCGGTACCGGTATTGAAGCAGGAACCGCTTGCATCGCCAACCGACTCGACGGCCGCCCTGCCATCGTACTACTCCTCGGACATGGCACTCTATCATGCCCACcagcaacaacagcaacaacaTCATCAAATGGTCGACAGTGGCAAAGATCTCGCAGACATTCAGTCGATTATCAATGTGGCATCGTCGGGTGGGTTGTTCGGTCGTCAGCTAGATGGTGGCAGCCATACGCCACTGTCTGGGTTGCTTGACGCATCGCTCGGTAAGGATGGTGCGGGTAGCGATAGTGGCATGTATGCCCACTCGACTGGATCGCGCGACGAACCGGAAGAAGCACAGGATGCGTTCACTGCCGAGTTTCGCCGTATGAAACTCCGTGGACAGTTCCCGTGCCGCATCTGTACGGCGGTGTTTCCAAATCTGCGCGCTCTGAAGGGTCACAATCGTACGCACGTGACGGCGGCCGGACCGGGTCCGTACCAGTGCAACATGTGTCGCTACGTGGTAAGCGACAAAGCAACGCTGATCCGTCATATGCGCACGCACAATGGAGATCGGCCGTACGAGTGTGCGTTGTGTAACTATGCGTTCACAACGAAGGCAAACTGCGAGCGGCATCTTCGCAACCGGCATGGACGAACGACACGGGAAGATGTTAAGCGCGCTATCATTTACCATCCGGCGGAGGACTCGTCCTGTGACGATCCGCTCAAAAAGCTGCAGCTGTTTAACACACCACCAGCCGACGGTTCCTACACGCCAACGATGCTTGCAAGTGCTTCGTATCAGGATGAGCAGAGTCTACCAGAAGGACGAAGCAGTACACCGTTGCTGTCGCAGGAACTTAAGGATATGCTTATGCCACAACTACCGCCCAGCTTTGTGGCAGCCGCAGCAGCTGCCGGTACAAACCACAGTTCCCTGCTCGACACAAGTCTGCTACTACAGACACCACTCGGTGGAGGCGTGGGTAATGGGGCATACGGAAATTCCGTGGCAGCCAAGATACAGGTGAAGAGCCTTGAGAAATTAAACCAACTTACACCACCCAAGGAAGACGACGACGAGGATGATGCGCTCGAGGAGGACCAGGAGCAATCTCTGGAGGATCATATCATCAGTTCTGGTAAAAAGGCACCATCAATCGCAGCAGACGGTGGAGTGTTAGTGCAGAAGGGTAGTAAACATTCGGCAGATGTAAACAGCAACGCGCTACCAATAGATTTGAGTATGGATGCGCTCGATCTCAGCAAGAAGTCGACTGTGTTTGGCCGCAAATCTGCCCCAGTCACTGCACCATCGGTACCGATGCTTTCCACGGACGGCGAAGACGACGATGATGATATCGAGGGCAACCCAGTACACCGTCACCGGGTGGAAATGTTGCTGCCCGTTAATGGCGTCGATAGTGAACCACGCTCGGTGGTGTCGAAGAAACATGCGGGTAGTGGGGGAACTGGTGCCAAACAGCAGCAGCAGCCGCCTGCGAAGGAGACTGACGCGGACGAGGACGAGTCGGCGGGACACCGGCGTGGAGATTTGCCAAAGCTATCCAAGGTCAATCTGGCCCAGCAACAGCAACAGTTCCAGCTGTTCAACGATACTTTTGCCAAGCTCGATCCGATGCACTTATTCCAGTTTTACCAACTATGTAATACGCTGCAGCTACCATCGTTCTCGCTGCATGCAGCTTCCTTTCTACAAAATTCCATGCTACCCGGTTCGGCGGCTGCCCTTGGGGAGCTGATGGGCAATGACTTTGGCTTGGGTCCCCTTCCGAATCTGGCAGCAGCGGCAGCCGCTACAGCCACCAGTGGCCGTAACCATCATCTGCCGCTGCTGGTAAATCCGTTCTATCCACCACCGGTAACCGATACGCCACCGAATAGTGTTACCAAGTCGGGCGACATGGGAGACATTGGAACAGCTGCTACTGTTGCAACGCCTAAGCAGCTGCTAACACCCTCAACGCCCTCGCCTATGTCAACACCGATTGGTGGTAGCAgtggagctggtggaactggtggagctAACGGTGGCAACAATCAATTGTCATCCTTGCAGCAGCATCCGGGCAGTGGAGGTGGGAGCGGGTCGCCAGTCACTTctgctgctgctttagctgctgctgcagcagctgccgctgGTGTGGGTAACTTCGGCGTATCTCCATTATCGGGCGCAGCAGGTGGAGTTGGTTCGTCCGGTGTTGGACCGGTAAAGATGGTGATTAAGAATGGAGTCCTTATGCCAAAGCAAAAGCAACGTCGCTATCGCACGGAAAGGCCATTTGCTTGCGAGCATTGTTCGGCGCGATTCACGCTACGCTCCAACATGGAGCGTCACATTAAGCAGCAGCATCCACAGTTCTGGTCTCAGCGACAACGGGGCGGTCATCATTTGATGCGTCGCGGTGGCGGTggaggaggaggaggaggaggaggaggCAATAGCAGTAGCGGTGCAAACAACTCGGTTGGGTCGCTGGTAACTGCACTACAGGGAGCGTTCGGTGCGGGTGGAGGTATGCACGGAAGCGGCACTGGAGGTGGAGCCATTTCTGAGCAGGTAAAATACGCCATCTTAGCACAGCAGTCCGGCAAAGGTAGTGGAGGGATGTGTGGTGGAAGCAATAGCCAGGATGGTGCTGCAAGTCACTTGAATCCACTGTTACACAACATGATCGTACAGGGTGCGGCAGGACAGTGGAATCAGCGGCAGCATCAGCAACAACAGCAGCAACGCCTTAACCATCACTACGGCCAACAACAGACACCCGTACTGTCATCCGGACTTGCCGGTAGACATATGAGAGGGGGAGCACGTGGTGAAACCGAAGAAGACGACGAGGACGATGGTCGGGAGGATCGACAGTACGAAGGTGCAACACCGATCCTTAGCCAACGCTACCGTCGCCGACGTCGTCGCCTGCAGTCACAGCTTGATCACGATGGTGAGTTTCTGCGCCGTGGTTTCGACGAAGATGGTAATATGCACAAGCTGACGTACGACGGGGAGGAACACCAGATGCCACCACCAGTAGAACCCCaggaggatgacaacgaggaggagttggaggaggaagaggatggaactccagaggatgggcatgagaagggtggggaggaggaTGATGAAGAGGAAGATGCGCAGCTCGTGATCGACGAGGACGAAGAATGTGGATCAAAAATGGCGAATATGCAAGTGCCGGAAGCTCAGAATGTTGCAAATGTAGCAGTGTACCCGGCACCGAAAGACCAGCGTGGAGCGAATGGTGCTGGGTACTCACAGCCCGAACATGGTGTCAGCTTGAACCGTATACTGAAACAGAAGCTGGAAGAAAATTGTTCCAAGGCAGAGATCGGTGTTGGTGGTGATAAGGTTGATACAGTGCAGGAGCAGCCAGAGATGAACTCTTCACAACAATCGTGCAAGCAACCTAAACAACACAACCAATCATCAACAGCTTCACCCACCGTTACAAGAAAGGCATCATCTAGCAGCAGCAGTAGTAGCAGTAGCCTGGTAAATCACGATGAGAGTGGTAGCAGCGATCTTGTGCCCGTGTCGAAACTGCTTGATAACGCCGTCAATCCGACATTGGAGAGCTTTTTCAGCAGACCAGAGGTTCAGGTACCACTGTCTCAGGACCACAGCGATGAGGAAGGTCTTGTAGCGTCTGGCTCGGCTTCTGAAAGTAATAACTCCGGCACGGATGACCCGAACCCTTCGGCAGTGGCACTCGCTCATCAGCAGCAAAAGAAGAAGTCAGCTTACAGTCTGGCCCCAAACCGTGTCAGCTGCCCGTACTGCCAGCGAATGTTCCCGTGGTCGAGCTCGCTGCGTCGTCATATCCTCACGCATACCGGCCAGAAGCCGTTCAAGTGTTCCCAATGTACGTTGCTGTTTACCACGAAGTCTAACTGTGACCGGCATCTGCTACGTAAGCATGGTGACGTGGAATCAGCTGTTTCGATACCGGTACCTATAGATGATCTGTTGGATCCGAAACCGGAACCGATACCGGTCGCAGTTGCCGAAGCAATGTGCAAGAAGATTTCTGGCAAGGGAGCACGATCGGCTGCTGCGACGGCCTCATTGAAGGGACCTGAGCAACAGCTCCCCCATCAACAACAGCAGCAACAGCAAAAGGCTAGTGCCGATGGCGAAGAAGACTTTCCAGATGCTGGAGTGTTGAAGGAGAAGCATGGTGATGTTGCTGCGGTTACATCAAAAAACGATTCACTTGAGGTAGCGATAACCCGTCACGAGTCGATTGATGACGATAGCGTGAAGCAAAACTCAGTGTTGGACAAACAGAATGGCAGTGATGATGGTCGAGACGAGGATCAGGAGGATGTTACGCACGGTAAGCAGTTGAATGAACAGGACGTAAAGGAGACGCGTCATCGACGTTCGGCACGCAGGCATCAGCGTGACGAGGTCGAGGAGAACGGCGATGAAGAGGAACGCCGCCACCGTCAATTCAATCAACACCATTCGGACACGACGATGGAGGAAGAGGATGGCGAAGGCAAGGAAGGGCTATTCTCGGTCGGTGGTTTGCCAGATCTACCGTACAAGTGCCATCTGTGCGATGTTTCTACTGCCGAGCGTGTCTCCTGCCTGGAGCACATCCAGCAAACCCATCCACAGGAGTTCACGACACTGAAGGCGAAGCTATCGCTCGAGACTGCGACATCGGCGACGGAGAGTGAAGCGCACACTGGTTCGCCGGATGATGATGAGAGTGGcaacaacaataataacaataacaataacaacGGTGGCAAGTATCTCGACTATGCCAATCGGAAGGTTATCTGCGCATTCTGTTTGCGTCGCTTCTGGTCGACGGAAGACCTGAGACGGCACATGCGGACGCACTCCGGTGAGCGACCGTTCCAGTGTGACGTGTGCGATCGCCGATTTACGCTCAAGCACAGTATGCTGCGACATCGGAAAAAGCACACCGCGGAAGGTGGCAACAGCTCGCCCACTTCGTCTTCATCCTCCTCCGGTCGGCGGCATAGCACGGTCCGTCGCACAAACGGCCAGTCGGACGGTAGAAAAGGTAAGCTCAACGGACACGATGATCCAAACAGTGGATCCGATCTTACCGATGACGACGAGTATGAGGACGCGGAGTGCTCCAGCCCACCGTTATCTAACCACCGCCAGCAGCAAGTATCAGCCGAACGTGGAATCGAAACCACCACTCCGGCGCTCCAAGCGATTACAGCATCCTCGGCAGCCCTCATCAGTGGTGGAAAGCGTTACAACCACCATCACTTCCACCACAGTCAACAACACTCAGAGTTGATCGGTAATCTACTCGGTATTAGCGACGAAGGTATCCTGAGTCGGGTTCTACTATCATCGGCATCCGAAGCTGCCAAGCTGCTCGGTGTGGACAAGTGA
Protein Sequence
MEAESDSAGVTSVAAPTNAVTGTGTSDRYTRAVVKVETPEPATESPTSETETTANQPIPDMDAGEEVSPLDVGKNVSPVAVEQTTVASDTGKRYICPICDCVSPTQRAFTDHIRLHNAESESAATAVASVSFCCKICSKVLSSASSLDRHVLVHTGERPFNCKYCSLTFTTNGNMHRHMRTHKYPSGRDSFESDAGGGGVGTGGGGSSSDGSGGGANKTVRNSGRGSGHGSSAAATNRHYRKKKEEEPEEDEDADEEDDYGQPKKKKRALLDGGDEQDEDELMDEQTSSNRRRRKEHHLIMNTDMEEQQHEHHREEANEDDGEFEVEELSGGKRKATLSSGGSERAQQYRKVRTINNNLLEGSVVESGQRYCCPVCVRNDFASMISLEQHLDREHPNIPAKCRHCEIMFRSHKALNAHRCSYNNYQNITPGFKDLTFVDFSSEKFPLIAKNMCEQTIRTPVTSQKYECTRCYRAFPCSKTLSMHAADCCSGGVGGGSSERATGRQRRKRAPSESDSSDVSGSDMGSCYDDRNNRSYDDERHPRNQQQQQQQHQQQHVQQQGHLRREDFFANLDLQNRPVGTFSEAPTTPSSLDKSFSSPVPVLKQEPLASPTDSTAALPSYYSSDMALYHAHQQQQQQHHQMVDSGKDLADIQSIINVASSGGLFGRQLDGGSHTPLSGLLDASLGKDGAGSDSGMYAHSTGSRDEPEEAQDAFTAEFRRMKLRGQFPCRICTAVFPNLRALKGHNRTHVTAAGPGPYQCNMCRYVVSDKATLIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHGRTTREDVKRAIIYHPAEDSSCDDPLKKLQLFNTPPADGSYTPTMLASASYQDEQSLPEGRSSTPLLSQELKDMLMPQLPPSFVAAAAAAGTNHSSLLDTSLLLQTPLGGGVGNGAYGNSVAAKIQVKSLEKLNQLTPPKEDDDEDDALEEDQEQSLEDHIISSGKKAPSIAADGGVLVQKGSKHSADVNSNALPIDLSMDALDLSKKSTVFGRKSAPVTAPSVPMLSTDGEDDDDDIEGNPVHRHRVEMLLPVNGVDSEPRSVVSKKHAGSGGTGAKQQQQPPAKETDADEDESAGHRRGDLPKLSKVNLAQQQQQFQLFNDTFAKLDPMHLFQFYQLCNTLQLPSFSLHAASFLQNSMLPGSAAALGELMGNDFGLGPLPNLAAAAAATATSGRNHHLPLLVNPFYPPPVTDTPPNSVTKSGDMGDIGTAATVATPKQLLTPSTPSPMSTPIGGSSGAGGTGGANGGNNQLSSLQQHPGSGGGSGSPVTSAAALAAAAAAAAGVGNFGVSPLSGAAGGVGSSGVGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWSQRQRGGHHLMRRGGGGGGGGGGGGNSSSGANNSVGSLVTALQGAFGAGGGMHGSGTGGGAISEQVKYAILAQQSGKGSGGMCGGSNSQDGAASHLNPLLHNMIVQGAAGQWNQRQHQQQQQQRLNHHYGQQQTPVLSSGLAGRHMRGGARGETEEDDEDDGREDRQYEGATPILSQRYRRRRRRLQSQLDHDGEFLRRGFDEDGNMHKLTYDGEEHQMPPPVEPQEDDNEEELEEEEDGTPEDGHEKGGEEDDEEEDAQLVIDEDEECGSKMANMQVPEAQNVANVAVYPAPKDQRGANGAGYSQPEHGVSLNRILKQKLEENCSKAEIGVGGDKVDTVQEQPEMNSSQQSCKQPKQHNQSSTASPTVTRKASSSSSSSSSSLVNHDESGSSDLVPVSKLLDNAVNPTLESFFSRPEVQVPLSQDHSDEEGLVASGSASESNNSGTDDPNPSAVALAHQQQKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSQCTLLFTTKSNCDRHLLRKHGDVESAVSIPVPIDDLLDPKPEPIPVAVAEAMCKKISGKGARSAAATASLKGPEQQLPHQQQQQQQKASADGEEDFPDAGVLKEKHGDVAAVTSKNDSLEVAITRHESIDDDSVKQNSVLDKQNGSDDGRDEDQEDVTHGKQLNEQDVKETRHRRSARRHQRDEVEENGDEEERRHRQFNQHHSDTTMEEEDGEGKEGLFSVGGLPDLPYKCHLCDVSTAERVSCLEHIQQTHPQEFTTLKAKLSLETATSATESEAHTGSPDDDESGNNNNNNNNNNGGKYLDYANRKVICAFCLRRFWSTEDLRRHMRTHSGERPFQCDVCDRRFTLKHSMLRHRKKHTAEGGNSSPTSSSSSSGRRHSTVRRTNGQSDGRKGKLNGHDDPNSGSDLTDDDEYEDAECSSPPLSNHRQQQVSAERGIETTTPALQAITASSAALISGGKRYNHHHFHHSQQHSELIGNLLGISDEGILSRVLLSSASEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00105401;
90% Identity
-
80% Identity
-