Acul007670.1
Basic Information
- Insect
- Anopheles culicifacies
- Gene Symbol
- -
- Assembly
- GCA_000473375.1
- Location
- KI422689:19047-21215[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.2e-05 0.0019 18.3 4.6 1 23 261 283 261 283 0.98 2 11 2 1.2e+02 3.2 0.3 3 23 288 308 286 308 0.87 3 11 2.5e-06 0.00015 21.7 0.2 1 23 320 342 320 342 0.98 4 11 0.001 0.058 13.6 0.2 3 23 347 367 347 367 0.95 5 11 0.0021 0.12 12.5 2.2 1 23 379 401 379 401 0.99 6 11 0.25 14 6.0 0.1 2 23 405 426 405 426 0.94 7 11 1.8e-05 0.001 19.1 1.6 1 23 438 460 438 460 0.99 8 11 0.027 1.6 9.1 1.8 2 23 464 485 463 485 0.91 9 11 0.00035 0.02 15.0 0.2 3 23 521 541 520 541 0.96 10 11 0.00012 0.0069 16.5 6.5 1 23 553 575 553 575 0.98 11 11 0.4 23 5.4 2.7 2 23 579 600 578 600 0.95
Sequence Information
- Coding Sequence
- ATGGAAAACATAAATTCAACGCTGCATGTTGTGAAACGAGAAGTTTGTGATAATTCAGATCAAGATGCAGGTTTGCAAAGTACCAGTAAGGAAAGCACTTCTGATGATGCCATGCATGCGGAAGAAAGAGAGAGTGCACCTGCATTTGGTAGTTATTATAATAACTCTGTTCCTATACAGATTAAGATCGAACCCCAAGAACTAGATACCGAATTGGTCAGCGCTTTGAATGACCAAGAATTTGCTAACCATGCAACATTTGTATCGAACACCAAACCGGAGCATCCTATAGACGATGATATAGATCTGGAAGCTACAAGGATAACTCCCTCATGTGGTACCGATGATACGAGTTATGCTGCAGTGCAAATTAAGGTCGAAGCCCAAGATTCAGTTTCAGATCAAGAACAAGACGTTTCAAAAGATACCATAGAATCTGGGCATGAGTCCTCTTTACCAGAAAAGGTGTTAAAATTTGAAAATGAACCGTTTGATATGGAAGCACAATCGCCAACATCGGTACAAAATCCAACTGTGCCAAATGCAGAAGATCCCAGCGAGATACATGATGATGGCACTGCAAACCAAAATAAACGCGTATATGCCGAAGGGGTATGTTTTGAAATTCGTGTAGTAGATGATGCTCGTAGTACAGAAGCCAACAATGTTCCAGCTGAACAACCATCCAACAGTAAACCCACAAACGAAAGTGGGTTGCCTCGGCAAACAGCATCAATCGATATAATGAAATCTATTAAAGCATTGGGCGAAAACAAGCAATACAAATGCGACCGGTGCGAGAAATCTTTTTGTGATAAAATGGAGCTAAAAATCCATAAAAGAAATCACCAGTTTACGATATGTCCGGTGTGTAAGCGAACCATGCGTACCGATTTCGTAAAAAGGCATATCGCTAGGGTGCATCCGGATGATGGAATTTTGCCTAAAAACCGATCCTTTCCGTGTGATGAATGTGATCGAGTGTTTTCGAACGACGTACAGCTGAAGAATCATCAGCTGTCGCATAAGAAACAGGGTTGTCCAGTTTGTGGTAAAATAGTGCGGTCCGACTATTTGAAGAGACACATGGACTTGAACCATCCGAAAGAAGTGAATTCATCCGATGGTAGTACGTATCAGTGTGATCAATGTGACACGGTGTTAAGCAACAAGTATCTCCTGTTTTTTCACAAACGCACCCACCAAACGGAAGAATGTCCCGTGTGTAAGGAAACGCTTAGGGCCGGATATATGAAGATCCATATCGACATGAAACATCCAGACCACAGTACCTTGCCCGAAAATCCCGCCTTCAAATGTGACCAATGCGAAAAGACATTTGGATACAAAGCGGCACTAACGCTTCACAAGCGCAAACACCGACTAACGGAGTGTCCGGTGTGTaaaaaaaCGGTACGAGTGGATTGTTTGAAGCGGCACATGGACTTTAACCATCCCAACGAGGCAAGTTTGGCGGAGAATGGTACGCGTCTGCAAAGTGATCCGGAGTGCAGTGGGCCCCAACTTTCAAATGATAGACGAGCGCAGCAAACGGAAGATTGTCCTGAATGTAAGGAAACGTTCCGTAGCGACTATCTGAAGATTCATATCGCCATGAAACATCCAAACGATAGCGCCTTGCCCGAGGATCGACCATTCCGATGCGATCAATGCGAGAAATCATTTTGCTATAAAACACAACTCAGACTCCACAAGCGAAACCATCGTTTAACGGAATGTAGCATCTGCCAGAAATCGATGAGGTTAGATTGCCTCAAGCTGCACATGACCAGAATGCATTCTAACACAGTAAACAGTGTTAGTACACAAAATTAA
- Protein Sequence
- MENINSTLHVVKREVCDNSDQDAGLQSTSKESTSDDAMHAEERESAPAFGSYYNNSVPIQIKIEPQELDTELVSALNDQEFANHATFVSNTKPEHPIDDDIDLEATRITPSCGTDDTSYAAVQIKVEAQDSVSDQEQDVSKDTIESGHESSLPEKVLKFENEPFDMEAQSPTSVQNPTVPNAEDPSEIHDDGTANQNKRVYAEGVCFEIRVVDDARSTEANNVPAEQPSNSKPTNESGLPRQTASIDIMKSIKALGENKQYKCDRCEKSFCDKMELKIHKRNHQFTICPVCKRTMRTDFVKRHIARVHPDDGILPKNRSFPCDECDRVFSNDVQLKNHQLSHKKQGCPVCGKIVRSDYLKRHMDLNHPKEVNSSDGSTYQCDQCDTVLSNKYLLFFHKRTHQTEECPVCKETLRAGYMKIHIDMKHPDHSTLPENPAFKCDQCEKTFGYKAALTLHKRKHRLTECPVCKKTVRVDCLKRHMDFNHPNEASLAENGTRLQSDPECSGPQLSNDRRAQQTEDCPECKETFRSDYLKIHIAMKHPNDSALPEDRPFRCDQCEKSFCYKTQLRLHKRNHRLTECSICQKSMRLDCLKLHMTRMHSNTVNSVSTQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -