Acul011003.1
Basic Information
- Insect
- Anopheles culicifacies
- Gene Symbol
- -
- Assembly
- GCA_000473375.1
- Location
- KI422479:7449-9820[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.002 0.11 12.7 2.2 1 23 109 132 109 133 0.94 2 13 0.014 0.83 9.9 4.5 1 23 167 190 167 190 0.98 3 13 0.00024 0.014 15.5 1.7 1 23 210 232 210 232 0.98 4 13 0.00024 0.014 15.5 3.3 1 23 249 271 249 271 0.97 5 13 8.8e-06 0.00051 20.0 0.7 1 23 365 387 365 387 0.98 6 13 1.2e-05 0.00072 19.6 2.6 1 23 393 415 393 415 0.98 7 13 0.0001 0.0059 16.7 0.8 1 23 421 443 421 443 0.99 8 13 0.017 0.96 9.7 1.6 1 20 449 468 449 469 0.95 9 13 0.0067 0.39 11.0 1.8 2 23 483 505 482 505 0.92 10 13 0.0049 0.28 11.4 0.2 2 23 514 535 513 535 0.96 11 13 8.5e-08 4.9e-06 26.4 1.1 2 23 542 563 541 563 0.97 12 13 9.5e-07 5.5e-05 23.1 1.0 1 23 570 592 570 592 0.99 13 13 0.0015 0.087 13.0 3.3 1 23 598 620 598 620 0.97
Sequence Information
- Coding Sequence
- ATGATTCTTCGACAATTTGTTACAGGTAGTAATGCTGTGGAAGAAATCTACATTGTTAAGTCGGATTGCTCTAGATTTGTGAATGAAACTGTCGATCTTGTGAGTGAACATTGTAATGCTTCTGATACTGCTGACCAGTGTGTTCTGGAGAGTATTGAGAAAGCTAAGGAAAAATCAAGATCAATTATCATCGAACTCCGTGAAGAATGTTGCAACGTAGATGCTATGCCAAATTTGGATGTGTTTTTACCTTCGAATAATACGCAATTACGCAGCGAGACACTTAATAGAACTACTTCCAAATCCGATTTGAGGGTAGATGAACACATTTGCAAACTGTGTTCGGTTAAATATGCTACGAACGGTCTGTTAAAACGGCATCTCAAAGAGGCTCATCATCACATGTTACCGTACAGTTGCAAATCATGTGCTTCTAGGGAAATAAGAAGTGTTTTAATGCTAAACAAACATTTTTCCCAGCACGATCACAATAAACAGTACAAATGTAGTTATTGCGAAGCAAGATTTGAAAGTACCACGCATCGTTCAGTGCACCAACGTCGTTTTCATCAAGAAGAATTATCGAACCATTTATATTATAACAGAGTGCAAGCTAATGCAGGACGATACACGTGTCGGTATTGTGAGAAACGATTTGTTGCCAAAGCGAATTTTGATCGTCACGAACGCAATCACGAGAAATTGCTGGCCCTGTCTGGTGAGGTGGATATTTTCGATTTCCTGCATTATTGTTATGTATGTAGTAAGCAATTTACCTCCAAGCAAACACTTAACGATCATCTGAATGTGCATGTTGATCGATTACCTTATCGATGTAATCAATGCGTGTCGTCCAACATGGTAATTTTATCCGTTCGCTTGTTGAACAAACATGTTGCATTGCATATAGAGAAGAAACCCATTAAATGTATCTATTGTGCAGAAACTTTTATCTCGATTCAGGAATGTGAAACACACGAGAATTACAATCATGCAGAGAGGAAAACGGTAGGAAACAGCTGTAGTTCTGGGGAAAACAAGGAAGAAAATGCGGAAGCGACCAAAAATAAACATGCCAATCCAATGGTGCGGTATGAGTGTTCCGTATGCAATAAATCATATTCGCTGCTAAGTACTTTGCGCAGGCATGAAAACGTTCACACTGGAAATCGACAATTCGTGTGCAAAGCCTGTGGCAAAATTTTCAATAGATCGTCGTGTCTCTCGCAACACGAACGTACTCATCTGAACAACAGTCCTTACAAATGTACCTATTGTGGTAGAGGTTTCAAGGAAACAGTTCGTTTGATTGAACACAAGCGCATACACACAGGAGAAAAACCTTTCCAGTGTGATCATTGTATGAAACGATTTCGTTTAAAACAACTGCTTAAAGAACATACCGTGCAGTGCGCCATCAAGAAGATTAATTCTTGCGAGGATGTTCAATGTCAACATTGTGCTCGTATGTTTCCCAGCACTCATTTGCTCATTAAACACACCATAGAATCACATCCACAGTACATACCTGTGGACGGCAAATGTAGGTATTGTGATGTGATGTTTAAATCTCCAACAGTATTATTGGAACATGAGCTGCGGCATCAGAAACCAGGTGTTATTGAATGTAAGCAATGTGGAAGAATCTTTAGACAAAAAGCTAATTTGAGGCGTCATCAGCGACTGCACACTATTAATGCTATGCCGTATAAGTGTGATGTGTGCGAAAAGACATTCTCACAGTTGAGCACGATGAATGTCCATAGGAGGGTGCATACAGGAGAAAAATCGCACAAGTGTGAACTTTGCGGGAAAGGTTTTCAGCACAGCTCGGCAAAAAGCCGTCATGAGCGTGCACATTATAATAAGGGAAGTAAATTATTTGTAACTTTATAA
- Protein Sequence
- MILRQFVTGSNAVEEIYIVKSDCSRFVNETVDLVSEHCNASDTADQCVLESIEKAKEKSRSIIIELREECCNVDAMPNLDVFLPSNNTQLRSETLNRTTSKSDLRVDEHICKLCSVKYATNGLLKRHLKEAHHHMLPYSCKSCASREIRSVLMLNKHFSQHDHNKQYKCSYCEARFESTTHRSVHQRRFHQEELSNHLYYNRVQANAGRYTCRYCEKRFVAKANFDRHERNHEKLLALSGEVDIFDFLHYCYVCSKQFTSKQTLNDHLNVHVDRLPYRCNQCVSSNMVILSVRLLNKHVALHIEKKPIKCIYCAETFISIQECETHENYNHAERKTVGNSCSSGENKEENAEATKNKHANPMVRYECSVCNKSYSLLSTLRRHENVHTGNRQFVCKACGKIFNRSSCLSQHERTHLNNSPYKCTYCGRGFKETVRLIEHKRIHTGEKPFQCDHCMKRFRLKQLLKEHTVQCAIKKINSCEDVQCQHCARMFPSTHLLIKHTIESHPQYIPVDGKCRYCDVMFKSPTVLLEHELRHQKPGVIECKQCGRIFRQKANLRRHQRLHTINAMPYKCDVCEKTFSQLSTMNVHRRVHTGEKSHKCELCGKGFQHSSAKSRHERAHYNKGSKLFVTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -