Acul008550.1
Basic Information
- Insect
- Anopheles culicifacies
- Gene Symbol
- ZNF407
- Assembly
- GCA_000473375.1
- Location
- AXCM01001496:32019-33732[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 5.8e-06 0.00034 20.6 1.0 1 23 260 282 260 282 0.98 2 8 0.006 0.35 11.1 0.2 1 20 285 304 285 306 0.94 3 8 7.8e-06 0.00045 20.2 0.6 1 23 336 358 336 358 0.98 4 8 0.00096 0.055 13.6 3.2 3 23 366 386 364 386 0.98 5 8 2e-08 1.1e-06 28.4 0.5 1 23 392 414 392 414 0.98 6 8 7.9e-06 0.00046 20.2 1.2 1 23 420 442 420 442 0.97 7 8 2.6e-06 0.00015 21.7 3.1 1 23 448 470 448 470 0.99 8 8 2.3e-06 0.00013 21.9 0.1 1 23 476 498 476 498 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAAGAAGTGTTATTACCGGCAGGTTGTCGTTGCTGTTTGATGGAGGAGAAAGATATGATCTATGTGTTTGATACGCTAGATGAATTTAGTACGACAATCAGCGACCTGATTACCAGAAATGGTGCTATAGTGATATCAGAAGATGATGCATTTTCCAAGCATATTTGTGGCAACTGTCTTAATGATGTAGCGATTGCAGAACGCTTCGTTTTACGTTGCCAAAAAACGAACGAACTGTTGACGAACCTCGTGTCAAATGATGCTCAAAGCAATGCTGATATTGGTGGCATGTTAGTAGAGGACGATATTTACACTGATGCGAACAGTGAACACATTTCGTACGAGCTCGTTTCATCGGAACCACAATCGCCGCTGTTTGAAACAGAAACCCTCGATGGGGAAAGCCAAACGACAGATATTTTTCATCAACTGGACGATCATGCTGAAGGCGCAAAGGATATGGAAATCACTAATTCAAAAACGCCTGAATTGTTTTGTTTGCAACAGTCTCACGAAGGAGGAATGATCGAGGAAGACGTAGATGAGACGGAACAGGTTCATCTGCTTTATAATAATGATACACTCAGCGAGATTGATTTTCTGTACAAGCAAGATCCAAACGGCCGAAATGATGAACTGTGTGATGAGATATACGAGGACCAGGAAACTGGCAATGCGTTTAAAGTCATTCAAACGAATGTCGAGATAAATGACGATAACGTAGAGTACGAATCGGAAGGGGATACTGTTGGTACGAAGAACGATTTTAAATACAGCTGTGAGCAGTGTGGGGCCAGTTTCGTTACTGCCAAACACTATGCTCGTCATTTACAATCGCACAACATTTTTGCTTGTGAAGAATGTTTGACAAGGTTTGATAGCAGACAGACGCTCAAATCGCATCAAATAGATTGTCCGCAAACTGCTGATACGGCAAAAAGTGTCTACAGTGATAAAAACACACCGGATTACACAGACCAAAGACAGCAGAAAAAACTATTCATCTGTACGTACTGCGACAAGCGGTGGATTTCACAATCCTCACTCACGGCCCATCTGCGAACGCATACCGGGGAGCGACCGTTCGGTTGCAGACACTGCTCAAAGCGTTTTAAAACGCTATCGGCCCTAGATTTGCACGAGCGCCGACATTCCGGAACCAAACCATACGCCTGTCCCGTGTGCGAGAAACGGTTTACCGAGAGCAGCAACCTTAAGGTGCATATGCGGCGTCATACGAATGAAAAATCACACATCTGCACGGTATGCAATCGTGCATTTGCGCGCGTTTTCTTActgcagctgcatatgcgaacgcacacgggtgagaaaccgtatgagtgtgaactatgtgagcggaaatttactcaacagtgcgatctaacggcccacagacggactcacaccggtgagcgaccgtacgcttgcaacatctgcggcaaaggtttcacgaaaagtaacgcactggcacaacacgtgAAAATCCACCAGAAGCATCTATTACTTGAACAGTGTGTGGAAAGCACGGAAGAATATATTGCGGAATAA
- Protein Sequence
- MEEEVLLPAGCRCCLMEEKDMIYVFDTLDEFSTTISDLITRNGAIVISEDDAFSKHICGNCLNDVAIAERFVLRCQKTNELLTNLVSNDAQSNADIGGMLVEDDIYTDANSEHISYELVSSEPQSPLFETETLDGESQTTDIFHQLDDHAEGAKDMEITNSKTPELFCLQQSHEGGMIEEDVDETEQVHLLYNNDTLSEIDFLYKQDPNGRNDELCDEIYEDQETGNAFKVIQTNVEINDDNVEYESEGDTVGTKNDFKYSCEQCGASFVTAKHYARHLQSHNIFACEECLTRFDSRQTLKSHQIDCPQTADTAKSVYSDKNTPDYTDQRQQKKLFICTYCDKRWISQSSLTAHLRTHTGERPFGCRHCSKRFKTLSALDLHERRHSGTKPYACPVCEKRFTESSNLKVHMRRHTNEKSHICTVCNRAFARVFLLQLHMRTHTGEKPYECELCERKFTQQCDLTAHRRTHTGERPYACNICGKGFTKSNALAQHVKIHQKHLLLEQCVESTEEYIAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -