Acul000349.1
Basic Information
- Insect
- Anopheles culicifacies
- Gene Symbol
- -
- Assembly
- GCA_000473375.1
- Location
- KI425325:4794-12336[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-12 8.8e-09 34.6 0.0 2 39 313 351 312 355 0.90 2 4 1.4e-12 2.9e-09 36.2 0.1 2 39 367 404 366 407 0.94 3 4 2.1e-18 4.3e-15 54.8 0.0 3 45 423 466 421 466 0.97 4 4 1.4e-17 2.9e-14 52.2 0.0 1 43 473 516 473 517 0.96
Sequence Information
- Coding Sequence
- ATGAGTGCCTCTAATATCACAGAAGATTCAGGACAGTTTGGCAGTTTACTACGGACGGCAGAACAGCTAAAAATTAAGGGCCTGTGTGAGGTGGGCGAACCACAGTACGAGCAGGATTACTCGCCAGCGCTAAAGCGGTACAAACCGTACCGGTCACGATCGccaccggacaaccggcatcagcaccatcaccatcagcaaccaccgcccccaccaccacccccatCCGGTTCATCCGGTACGAGTAGCGGTGGCCGGTCCGGTTCCGGTGCAGTAGGCGGAGGTGGATCACACGGAAGCGGTAGCGGCAGTAGCAGTAATAATAACAGTTCGTCTTCCTCCCAATCGACGGGATACAGTGAGAACGGCAAGGGTTGCAGTACGGGCAAGGGAGGTAGTGGTGGAGGATCGGGATCAGTAGGACGTAGCCTGTATCATCCAACGCAGTATcatcatccgctgcaccatcaccaccatcatcatccgcacctgcaccaGCTGCATCACGGCGGTGACACACGAACCACTGGCAGTCATATTGTCGACGAGGACGATGATGGATCACCTGGCGGTGCCGGTGGATCCGTAACACCGGGTCCACCCACGAACAATAGCAACGGTAATGGGGGCGGTCCGCCGGCTGGTGGAGACGAGATGAAGCCGAGACTGAATCTGAAGCAGGAAAACCTTAGCGATGGTGGTGCCGACCAGCAACATCAGACGATGGAAGTCGAGCAGGATCAATCGTCCATGCATGGTATGGTGGTGACACCGGAAATCTCGGGCATCATGAACCAGAGCCAAATGAGCGATATGTATCAGTCGGATGCAAGTGAAGATTCAAAGGTGGGAATTCTGGATGGGTCCTCGATACAGTACACCAACCTGACAAGTCCGAATGAGGCGAAAACACCTACCGGACCGAAAACGTGGACCGCCGAAGATATGGAATCGGCGCTAGAAGCGCTACGTTCACACAACATGAGCTTGACAAAGGCATCTGCCACGTACGGTATTCCATCGACGACACTGTGGCAACGTGCGCACCGGCTCGGCATTGATACGCCGAAAAAGGAGGGCCCATCGAAGACGTGGAACGAGGACTCACTCAACAGCGCCCTGGAAGCGCTCCGGACGGGTACGATCTCCGCCAACAAAGCGTCGAAAGCGTTCGGCATACCGTCGTCCACGCTGTACAAGATAGCGCGCCGCGAAGGCATCCGCCTGGCGGCACCGTTCAATGCGGCACCCACCACCTGGTCCGCGGAGGATCTGGACCGTGCCTTGGAAGCGATCCGTGCCGGGCAAACGTCGGTCCAGAAGGCCAGTACGGAGTTCGGCATCCCGACCGGTACGCTGTACGGGCGCTGCAAGCGCGAAGGCATCGAGCTATCCCGTTCCAATCCTACGCCCTGGTCCGAAGATGCAATGATGGAGGCCTTGGAGTCCGTTAAACAAGGACACATGTCGATCAATCAGGCCGCCATCCACTACAATCTGCCGTACAGCTCGCTGTACGGTCGGTTCAAACGGGGCAAGTACGATACGCCCAGCTCGGGAggcggcggtggcggcggtggcAGTTCGTCCAAtgctgctgctgctgctgctgctACCGGTGGTGGTGGCGGCGGCGGCACAGCCAGTGGCGGCAGTAACGGTGGCGCCAACGCCACCAGTGCCGGTACAGGTGGCAGTAATGTTGGCGGTAGTCCCCAGATGGAGTTTAAGATAGAACCACAGCATAACGATCATAGTCCAGAGAACACGCGCGCGTTAATAATAAGCGAAGGAGAGGAACGGTATCTGAGTATCGCCAATCAAAATCTGGTACAGGATCACACCATCATGCTCCCAACAGTTGAATGGCAAACAGGTACTGTAAATGCTCTGCCACATCTCTTTTGGAAGGCCGGTTCTACGGAGGTGGATCTCGATATAAGCCGTAGCAGCAGGTGA
- Protein Sequence
- MSASNITEDSGQFGSLLRTAEQLKIKGLCEVGEPQYEQDYSPALKRYKPYRSRSPPDNRHQHHHHQQPPPPPPPPSGSSGTSSGGRSGSGAVGGGGSHGSGSGSSSNNNSSSSSQSTGYSENGKGCSTGKGGSGGGSGSVGRSLYHPTQYHHPLHHHHHHHPHLHQLHHGGDTRTTGSHIVDEDDDGSPGGAGGSVTPGPPTNNSNGNGGGPPAGGDEMKPRLNLKQENLSDGGADQQHQTMEVEQDQSSMHGMVVTPEISGIMNQSQMSDMYQSDASEDSKVGILDGSSIQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGGGSSSNAAAAAAATGGGGGGGTASGGSNGGANATSAGTGGSNVGGSPQMEFKIEPQHNDHSPENTRALIISEGEERYLSIANQNLVQDHTIMLPTVEWQTGTVNALPHLFWKAGSTEVDLDISRSSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -