Acru006383.1
Basic Information
- Insect
- Anopheles cruzii
- Gene Symbol
- -
- Assembly
- GCA_943734635.1
- Location
- OX030879.1:59171176-59177794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.74 45 4.6 0.7 3 23 344 369 342 369 0.83 2 10 0.23 14 6.2 0.3 1 23 658 686 658 686 0.93 3 10 0.84 51 4.4 4.7 6 23 695 712 695 712 0.98 4 10 0.0011 0.067 13.5 2.0 1 23 716 739 716 739 0.92 5 10 0.00018 0.011 15.9 2.4 1 23 753 775 753 775 0.98 6 10 0.0055 0.34 11.3 0.3 2 23 779 800 778 800 0.93 7 10 7.1e-05 0.0043 17.2 0.3 2 23 839 861 838 861 0.94 8 10 0.0015 0.093 13.0 0.2 1 23 868 891 868 891 0.96 9 10 3.2e-06 0.0002 21.5 0.4 1 23 896 918 896 918 0.98 10 10 0.00014 0.0083 16.3 0.7 1 23 924 947 924 947 0.98
Sequence Information
- Coding Sequence
- ATGAATGAAAAGTGCCGTCTTTGTTTGGAAGCTGTGCAGTGCAACGCAGGGACATCAATTGTGAACGAAACATTTCGCAAGAAGCTAGAAAATGTGTTCCTGTTTAGCATATGCGACGATGGGCCGCTGCCGGTGCAAGTTTGCCAGAGCTGCGATACGACGGTGTCCGAGTTTCATACATACAGCCAACAGGTACGGGCGAACCAGGAGCTACTCCGCCAGGTAGCGGAAGCGAATGAAGACCTCGAAAAGGTGAAACTGGAACCTGCTAGGACGGCGCATGAGTTCTCTACCGACGACGAAGATGTGCCTCCGAGTCCTGAACGGGTCATACTGATGGTGGAGCCAGCAGACGGTGCTGCGAGTGGTGATTCATCTGACGAAGGAACGGGGGGTCGGCACAGCGAAAGCACTCCGCTAAGTAGCTCGGGGAAAAGATTAGAGGAGTGTGCAGGGGTATGCAGGCGTGCAGGCGCCGGGTGCTACTGGAAAGTACAAGAGTTTTACAACTTCCGCAAGGAAGTGCAGTCCAATCAGGAGCGATTGAAGGGAGATTACCTCGCCGTGAGGACTGCACAACTCTCCGATAGTGCGTCCGAAGAATACTCAGACTATGACGACTCGGTCTTAGTTTGTGAGCTAGGTGATCCGCTTTCAAGCGAAGCATGGCCACCTAGTTTCACCAAGGATACTGAAAACGAGCTGCTCGTTGAGCCCGAGGTGTGCTCTAGCCGTGAAGACAAGGAGCCAGATAAGGAGCCGATCTCCGATAGTGCGCTCAAAGAACCGCCAGAGCATGACTTCACGGTCACCGTTTGTAAGGAAGCGGCGTTCGCCGTTGAACCGGACGAAACGCTACGTTATCCGCTTTCAAACGAAGCTAGCAAGGATACTGAAAACGAGCTGCCCGTTGAACCCGAGGTGTGCTCTAGCCGTGAAGACAAGGAGCCAGATGTACGCACTAGTGGAGAACAATCGGAGAAACTGCATGAGAGCGATCGAACCATAAGGAAGTTCTTTAAACTATGCTGCGAACTGTGTCCCGAGGACAGCGTGCAGGACTTTGGCAGTTTCTCACAGCTAACGACGCACTACCGTAAGACCCATGGCACACGTGGATACCTGCGATGCTGTGGCAAGAAGTTTCTCCGACGTTTCCGAGTGATGGAACACATCGCGCACCATCAGGGTGCAATCCGTTGCGATGTCGCCGATGAGGAACACTTTCCGGCAGAGGTTTGTTGGAAGTGCTTCTGCTGGGTGCGGGACTTCAGTTGGTTCAGCCAGCGAGTGCAGGCCGTCCAGGAGCTGCTGAATCGCGAATATATTTTCGGAAATACTTCCCTTTCCGAAGCATCGCATGTGAAATCTCATCCCGCACTTGCCTCAGCCGATGACACCGAAATCGAACCGCCAGCGACAAGCGAGACCAGTCTGATCGAAGACGATGCTGTTGGTGAGCACCAAATGCCCACCAAATTCTGCCCCGATCTATCGGCTGAAGACGAAGAGCAGATGCAGATGCTCGATGGCGAACCTGTTAAGGAGGAGGTTTTGGAAGACGAGAACGACTACGACGGCGAGGACATTGCTACTATGTCGGACCTTGACTCGATTGTGAAAATGGGATCGGTTCGAGCAATCAATACATTTACGGACATCGAATCTCTTGTGGAAACGGAACATGCAGCGGACATGGAAAATTTAATTAAAGCCGGTTATTCTGTGGAGATAGAATCTGCTGAACCTATGCCGACTGCCGCCGACTACTCACTGGAAGGCGACCTACTAGCCGAGCTCGAGATACCGTGTGACGCGGATACTCAGATCCAGATTTTGGACAACGAAGAAAATGTGCCAACAGTACAGCCTCATGGTACACGGCCCACTCGCACTTTTCCGATCGTGCCGGCCTACAAACTACCTCGTAACGAGCACGACAGTGACACTCTAATAAAGCAGTTTCTGGATTACAAATGCGAACTGTGCCCGGACGCGGAGCGAAAACAGTCATTCGACACGTTCTACAGTTTGCGGATACACTACGAGGAAGAGCATGACACGCCAGGTTACATGCGCTGTTGTAACCGAAAGTTCCACCGCCGGAACTGGTTGAAAGAGCACATCAATCATCACCGTGGAGTGTATCGCTGTAAAACGTGCGACAAAGTTTTCTGCGCCGAACGAACCCTGCGCTGGCACGAGGAGAACATGCACAAGGAGCTGGGCTGGATATTGGAGCCAGACGAGCGACCATTTGAGTGCGACACGTGTGGGTACACGTGCACCAACGCAAAGTCACTGGCCAGCCACAAGCAAAGGCATAGGAAAAAAGAGTGCCCCATTTGCAACATCGTCTATAATGCCAATTCGCTCAAAACGCACATGGCACACGTGCACCAAATAGGTGAGATACTGATTTGCGAGATGTGTGCCCATAAATCTTATTCGAAGCAGGCAATGGATAAGCACAAGATGCTTCACCATGCCAACGGGGACACCAAGTTTGTCACGACCTGCCAGTATTGTGGAAAAGGTTTCCAGCGTCCAGAACGTTTGAAAGCGCACATCATCTACAACCACACGCAAAAGGGGCAGGTTTATCAGTGCGACATTTGTGGCCGAAACAGCCCCAACAGCAGGGCGCTTTACGAGCACAAATCAAGAATTCATGCAGAAAAGCGTTTCCCGTGCGAGTACTGCGGTAAGGTGTTTGCCCGGAAGCTCTACCTTAGCGACCACCTGTCCACCCATACGGGCAATCGGAAGTACGAGTGCAAAATATGCGGCGTAAAGTACAGTTCGCGGGGAAACATCGCCAACCACCGGAAAAAGAAGCACCCGGAACTGGTGCTCCTAAAGAAATGA
- Protein Sequence
- MNEKCRLCLEAVQCNAGTSIVNETFRKKLENVFLFSICDDGPLPVQVCQSCDTTVSEFHTYSQQVRANQELLRQVAEANEDLEKVKLEPARTAHEFSTDDEDVPPSPERVILMVEPADGAASGDSSDEGTGGRHSESTPLSSSGKRLEECAGVCRRAGAGCYWKVQEFYNFRKEVQSNQERLKGDYLAVRTAQLSDSASEEYSDYDDSVLVCELGDPLSSEAWPPSFTKDTENELLVEPEVCSSREDKEPDKEPISDSALKEPPEHDFTVTVCKEAAFAVEPDETLRYPLSNEASKDTENELPVEPEVCSSREDKEPDVRTSGEQSEKLHESDRTIRKFFKLCCELCPEDSVQDFGSFSQLTTHYRKTHGTRGYLRCCGKKFLRRFRVMEHIAHHQGAIRCDVADEEHFPAEVCWKCFCWVRDFSWFSQRVQAVQELLNREYIFGNTSLSEASHVKSHPALASADDTEIEPPATSETSLIEDDAVGEHQMPTKFCPDLSAEDEEQMQMLDGEPVKEEVLEDENDYDGEDIATMSDLDSIVKMGSVRAINTFTDIESLVETEHAADMENLIKAGYSVEIESAEPMPTAADYSLEGDLLAELEIPCDADTQIQILDNEENVPTVQPHGTRPTRTFPIVPAYKLPRNEHDSDTLIKQFLDYKCELCPDAERKQSFDTFYSLRIHYEEEHDTPGYMRCCNRKFHRRNWLKEHINHHRGVYRCKTCDKVFCAERTLRWHEENMHKELGWILEPDERPFECDTCGYTCTNAKSLASHKQRHRKKECPICNIVYNANSLKTHMAHVHQIGEILICEMCAHKSYSKQAMDKHKMLHHANGDTKFVTTCQYCGKGFQRPERLKAHIIYNHTQKGQVYQCDICGRNSPNSRALYEHKSRIHAEKRFPCEYCGKVFARKLYLSDHLSTHTGNRKYECKICGVKYSSRGNIANHRKKKHPELVLLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -