Acru012483.1
Basic Information
- Insect
- Anopheles cruzii
- Gene Symbol
- -
- Assembly
- GCA_943734635.1
- Location
- OX030880.1:80433306-80434757[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.7 4.1e+02 1.6 1.2 3 23 39 60 37 60 0.90 2 13 0.0015 0.091 13.1 3.8 1 21 72 92 72 93 0.95 3 13 0.0021 0.13 12.6 1.5 1 23 113 136 113 136 0.94 4 13 4.5e-05 0.0027 17.9 0.7 1 21 150 170 150 171 0.95 5 13 0.19 12 6.4 1.0 2 23 188 210 187 210 0.96 6 13 0.01 0.62 10.5 0.8 1 20 224 243 224 245 0.95 7 13 0.00042 0.026 14.8 3.4 2 23 253 275 253 275 0.97 8 13 5.4e-05 0.0033 17.6 6.7 1 23 297 319 297 319 0.98 9 13 5.5e-07 3.3e-05 23.9 1.1 1 23 325 348 325 348 0.97 10 13 2.2e-05 0.0013 18.8 3.6 2 23 359 380 358 380 0.96 11 13 0.015 0.9 9.9 6.1 1 23 386 409 386 409 0.92 12 13 0.00012 0.007 16.6 3.5 1 23 416 438 416 438 0.95 13 13 0.00026 0.016 15.5 3.4 3 23 448 469 447 469 0.97
Sequence Information
- Coding Sequence
- ATGGAGACGATGGAAAGTTTCCGTTCCGATCCGTTGAATCGGATTGAGTATGCTTCGGATGCTTCGGAGCAACGTAGTGAGGAGGAAAACGTTGAAGCCGATGACTCGACTCACTGTTGCGCCTGTCGCAAGGACCTTGAAACGGTCGAAGCGTTGCAGGAGCACTTGAAGGCAGTACATCTCCCACAGAACCGCGAAAATCACGCCAAGCCGTACCAGTGTGACAAGTGTTTCCGGCGCTACTTTAACAAGTACACGCTCAAGCGCCACAAACAGCTGGCCGTGACGGTGCTGCGGCCACGCACGACCGAAGAACCGTTGGCCGCCGAAGACCTCTATCGGTGCTGCGGTTGTCGGCAGGATTTCGTGTCGGCCCAAGAGCTGCAAAAGCACTCCAAAGAAGCGCATCTGAAAAATCGTGTCTGTTTCGTGGACAACCCCCGGACGCACGAGTGCCCCGTTTGCTACAAACGGTTCATTTCGCAACCTTCCCTAAGGCGCCACTACAAGGATCGATTCCTCTACGGACGTGTTCACCGCGATCGCAAAGTGTCCGCCAATCAGTGCTGCGGCTGTGGGGACCAATTTCTGAACCGAGAGCAGCTACAAGCTCACTCGAACACAGTCCACGAGCCGGATCGCCTATCGGACGCGGCGCACCCGGGCGGGTTCGAATGTACCATTTGTTACAACCGTTTCTCCAGCAAAGCGGTTTACCGGCGGCATCGGACGCTCCTCGACCCGGACCAGTTGCGACGCTGCCACGTGTGTGGCAAATCGTTTCTCCAGCAGCGCATGATGCGTGCCCATCTGCGTAAGTTTCATCCCGAGACGGCGCGGACCTGTGTGGTTCCACGTGAGCCCGGTGCGGAGGCCAGTGGGGGGAACCATCagtgcacgttctgtggtaaaaggttccacaacaaaagcaccctggtcaatcacgaaaaaacgcacgatacgaacgcagaattccggtgcgcgatctgtgagaagcgattctccaacaaaggcaacttgaaggtgcacacgcaacgcctgcacggccaggcgccgagccgacagaacccgtgcgaatgtcccgtgtgtgggaaaatctgtaagaccccgcactatctggagacgcacgcgcgtatgcacaccggcgagaaaccgttccagtgcaaggagtgcgggaaacagtttgcgcacgcctccggccatcaccggcatctgcatctggtgcacaGCACGTCTAGACCCGTATTTTGCTGTGGCCATTGTGGTAAAAAATTCACCGTCCAGTCCAACATGCTGATCCACGAGAAGGGCCACTTGGCGGAGCAAAACGCGGCCGTTGCCTGCACCGTGTGCGGCAAGACGTTTGGCCACGAAAAGTACATGAAAAAGCACCGCAAGCGCCAACATGACAGCGGTGGTCCGCAGGAACGGAATTCACCCGTTTCCCTGTAG
- Protein Sequence
- METMESFRSDPLNRIEYASDASEQRSEEENVEADDSTHCCACRKDLETVEALQEHLKAVHLPQNRENHAKPYQCDKCFRRYFNKYTLKRHKQLAVTVLRPRTTEEPLAAEDLYRCCGCRQDFVSAQELQKHSKEAHLKNRVCFVDNPRTHECPVCYKRFISQPSLRRHYKDRFLYGRVHRDRKVSANQCCGCGDQFLNREQLQAHSNTVHEPDRLSDAAHPGGFECTICYNRFSSKAVYRRHRTLLDPDQLRRCHVCGKSFLQQRMMRAHLRKFHPETARTCVVPREPGAEASGGNHQCTFCGKRFHNKSTLVNHEKTHDTNAEFRCAICEKRFSNKGNLKVHTQRLHGQAPSRQNPCECPVCGKICKTPHYLETHARMHTGEKPFQCKECGKQFAHASGHHRHLHLVHSTSRPVFCCGHCGKKFTVQSNMLIHEKGHLAEQNAAVACTVCGKTFGHEKYMKKHRKRQHDSGGPQERNSPVSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00094650;
- 90% Identity
- -
- 80% Identity
- -