Basic Information

Gene Symbol
ct
Assembly
GCA_943734635.1
Location
OX030880.1:1379504-1383296[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.1 5.8e+03 -2.8 0.0 37 51 134 148 124 150 0.79
2 3 3.7e-32 1.9e-28 98.0 0.0 3 77 393 468 391 470 0.96
3 3 7.6e-31 4e-27 93.9 0.0 3 76 702 776 700 779 0.96

Sequence Information

Coding Sequence
ATGCCATCATTCGGTCGACCGGACGGTGACCTGAGCGACGACCGGATCCACCACATCCTCTCGGAGGCCTCGATGATGAAGCGCGATCAACCGCCGACGGCCGCCCAGCAGCAACAGGCGGCGGCCCAGGCCCAGCAACAGGCCCACCACCACCAGCAGCAGATGCGCGAACAGATGCAACTCCAACAGCAGCAACTCCAGCAACTGCACCTGAGCGGACTGGACGACTCGACGCAGCACAGCGACACCGACTCCAAGTCACCGCCGGGCCGGGACGTCCACTCGCCCTTCGCCAAAGACTTCCACAGCGGGCGGGGCGGCAGTGGCGGCCCAGCGTCGGGACGACCCAAGAAGTTCGAGCACGACGACATCCCGCAGGACAAGATCTCCAAGATCTACCAGGAGGAGTTCTCCAAGCTGATTCGCAGCCCGCGCGACTTCCCCAATATTCTCTTTCCCCACATTCTCAGCGGTGCCGGCGGCGGTGGCGTCGGCGGCGGGATGCCTCCGATGGACCGGATGGACGACAACATCCGGATGGCGCTGGAGGCGTACCACCGGGAGTTGGCGAAGCTACAGCAGAACGCGCAGATGCCCAACTTCCTGGCCCTTCACCAGCACCAATACCAGCAACAGCAACAGCAACAACAGCAGCAGCAACAGGCGTCGCCGGCCGCGCCACAAACTCCAGCGCAGCCATCGCAACCTCTGAACGGTGGCTCCGTGCAGGACTTGTCACTCCCGAAGGAGAAGCAGTCCGGGGCGTCCTCGGTGGACGGACGAACTCTCGGCCCTCGGTTGCTGAACGGTGGGGCCCTCTCGGACGCGGACTCCGACGCCGACATGAGTCAGAAGGAACTGGACGAGGCGGGCCTGAAGCACAGCGCCTTCAGCTTGGTGAAGCCGAAACCTTCGGAGGCGTCCGGGCTCTGCACACCGACAACGACCACCTCGTCGACGGCGGCCAGTCCGATCGGGAACAGTATCCTTCCGCCAACGCTGGCGGCCGGTGGCCCGGCGGACGACTTCTCCGTGTCGGCGAGTCCACTCCAGCGGATGGCGTCGATCACGAACTCTCTGATCACGCAGCCGCCGGTCACGCCACACCACACGACCCAGCAGCGCCCGCTGAAAGCCATCCTGCCGCCCATCACCCAGCAACAGTTTGACCTCTACAACAACCTCAACACCGAGGACATCGTGCGGCGCGTCAAGGAGTCCCTGTCGCAGTACTCCATCAGTCAGCGGCTGTTTGGTGAGTCCGTCCTGGGTCTTTCCCAGGGATCCGTGTCGGACTTGTTGGCGCGACCCAAACCCTGGCACATGCTAACGCAGAAGGGCCGTGAACCGTTCATCCGCATGAAGATGTTCCTGGAGGACGAAAACGCCGTGCACAAGCTGGTCGCCAGTCAGTACAAGATTGCGCCGGAGAAGCTGATGCGGACCGGGAACTACAGCGGAACCCCGCAGTTGCCGGCCATGCTCCAGAAGCAGATGCCACCGATGCCGAAGATGCTGAGCGACTCGATCAGCAAGCTGCAGCAGGACCAGAAGACGCTCCTGCAGCTCCAGATCTCGCAGATGCAGCAGCAGCTCCCGCAGCAGGCGGCGGCTCAGGCGGCTCAGGCGGCTCAACACCAGCACCAGCTGGCGGCGGCTGCTGCCGCGGCGGCCGCCGCTCATCACGCCGCCCAAGCAGCCGCTCATCACGAGCGGCAGCAACAGCAGCCGCCGATGCCCCCCTCGCAACCTTCGCCCCGGCCACAGCAGCCGTCCCCGCAGACGATGCTACTGACGCCGCCGGGAATCCCGCCCCAGCACGCCATCGCCCTGCAGGCGGCCGGTCCAGGGGTGCTGCATGGCGGGCCGCCGGTCGACAAGAAGCAACACTCCTCGTCCTCCTCTTCCACCACCTCCTCTTCGGCCCCGATCCTGATGCCGATCCACTCGCCGGTTCCGGTCCAACTCCGGGAACCACAGCACGGCGGCACTCCGGGACCCCCAGGAGGCGGCCCCCCCGGCGGTGGCCACCCGGTCAACGCGATGCGGGGCTCCCTCCACCAGCACATCTCGCCCACCGTGTACGAGATGGCGGCCCTTACGCAGGACCTCGACACGCAGGTCATCACGACGAAGATCAAGGAGGCGCTGCTGGCGAACAACATCGGCCAGAAGATCTTCGGCGAAGCGGTCCTCGGGTTGTCGCAGGGCTCCGTGTCGGAGTTGCTGTCGAAGCCGAAACCCTGGCACATGCTCAGCATCAAGGGCCGGGAACCGTTCATCCGGATGCAGCTCTGGCTGAGCGACGCCAACAACGTGGAGCGGCTCCAGGCACTCAAGAACGAGCGTCGGGAGGCAAGCAAACGGCGCCGCTCGACGGGACCGGGCGGAGCGCAGGACAACAGCTCGGATACGAGCAGCAACGATACGTCGGAGTTCTACCATTCGAACTCCCCGGGACCGGGATCGGTTGGATCGGCCTCCGCTTCAGCATCGGCTGCGCCGCCCAACAAGAAGCAACGGGTCCTGTTCTCCGAGGAGCAGAAGGAAGCGTTGAGGTTGGCGTTTGCCCTCGATCCGTACCCGAATGTGCAGACCATCGAGTTCCTGGCCAGTGAGCTCGGGTTGTCGACGCGCACCATCACCAATTGGTTCCACAACCACCGGATGCGGTTGAAGCAGCAGGTGCCCCATGGCCAACCCTCGGAGCCGATTCCGTCGCGTGAAAACCAATCCGGAGCGCCCTTCGATCCGGTCCAGTTCCGGGTGCTCCTAAGCCAGCGGCTGATGGAGCTGCAGAAGGAGCGCCTGGGACTGTCCGGAATGCCCCTTCCGTATCCGCCTTACTTTGCGGCGGCGGCGGCCGCCGCCGCTTCCAACCCGAGCAATCTGGCCGCCCTGATTGCGAGCAGGGCGGGTGGCTTCCTGCCGGGGGAGGCGGATCTGGCCGCCCTGAACAAAGCGGTCAGCGAGCAGATGTCGGGATTGGACCTTTCGATGCCGTCGTCACTGAAGCGCGAAGGGGATGACGATTACGAGGACGATGAGGAAGCGGGCAGTGGTCATATGAGTGACTCCGAGTCGCTCGACGGGTCGATGGGTAGCAAGCGGGGAGGCCATCACCACCACCACCAGCATGATGAGCACCACCACGGGATCACCGTCCCGGGGACGCCCCTCTCGCTGGCCAGTCTGCAGGCGATGGCGAGGATTAACCGCCGCAAACCGGCCGCCCCGCAGTGGGTCAATCCGGACTGGCAGGATGGGACTGGCGAGAAGGCTGGAGCCGGCGGCCTGGGAAAGCCCGGCGGCGGTGACGCGGCCAGCGAGGCCATCATCAACGGGGTCTGTGTGTTGCAGCCGCCCGACGGCGTTCCGTCGGTGCAGCAGCGGTTCGCCGCCGCAATGGCGGCGGCTGCGGCGGCTGCCGCCGTAGCCGCGGCGGCCGGCGGCCCAGATCAGGACGATCCGAGTGACGGCGAGAATGATGCCGACGATGCCAAATCCACCTCCAAGCAGGACGACGACGAAGATGAGGAGGATGGCCGGCGGGGGGAGGATGCAACGGGTGCCGGGGCGGGTAGCAGATCGGGCAGTCCGGCCACCCAGCAACCGTCAGCGTCGCCGCCGCCACCGTCGAGTGTGACCGTCAAGAAGGAGATCCTCGATCAGGACTCGGGCACGGCGGGCGCGGCCGAAGCGGCCCCCACCGGTGACCGGTGGGAGTACTGA
Protein Sequence
MPSFGRPDGDLSDDRIHHILSEASMMKRDQPPTAAQQQQAAAQAQQQAHHHQQQMREQMQLQQQQLQQLHLSGLDDSTQHSDTDSKSPPGRDVHSPFAKDFHSGRGGSGGPASGRPKKFEHDDIPQDKISKIYQEEFSKLIRSPRDFPNILFPHILSGAGGGGVGGGMPPMDRMDDNIRMALEAYHRELAKLQQNAQMPNFLALHQHQYQQQQQQQQQQQQASPAAPQTPAQPSQPLNGGSVQDLSLPKEKQSGASSVDGRTLGPRLLNGGALSDADSDADMSQKELDEAGLKHSAFSLVKPKPSEASGLCTPTTTTSSTAASPIGNSILPPTLAAGGPADDFSVSASPLQRMASITNSLITQPPVTPHHTTQQRPLKAILPPITQQQFDLYNNLNTEDIVRRVKESLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGNYSGTPQLPAMLQKQMPPMPKMLSDSISKLQQDQKTLLQLQISQMQQQLPQQAAAQAAQAAQHQHQLAAAAAAAAAAHHAAQAAAHHERQQQQPPMPPSQPSPRPQQPSPQTMLLTPPGIPPQHAIALQAAGPGVLHGGPPVDKKQHSSSSSSTTSSSAPILMPIHSPVPVQLREPQHGGTPGPPGGGPPGGGHPVNAMRGSLHQHISPTVYEMAALTQDLDTQVITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQALKNERREASKRRRSTGPGGAQDNSSDTSSNDTSEFYHSNSPGPGSVGSASASASAAPPNKKQRVLFSEEQKEALRLAFALDPYPNVQTIEFLASELGLSTRTITNWFHNHRMRLKQQVPHGQPSEPIPSRENQSGAPFDPVQFRVLLSQRLMELQKERLGLSGMPLPYPPYFAAAAAAAASNPSNLAALIASRAGGFLPGEADLAALNKAVSEQMSGLDLSMPSSLKREGDDDYEDDEEAGSGHMSDSESLDGSMGSKRGGHHHHHQHDEHHHGITVPGTPLSLASLQAMARINRRKPAAPQWVNPDWQDGTGEKAGAGGLGKPGGGDAASEAIINGVCVLQPPDGVPSVQQRFAAAMAAAAAAAAVAAAAGGPDQDDPSDGENDADDAKSTSKQDDDEDEEDGRRGEDATGAGAGSRSGSPATQQPSASPPPPSSVTVKKEILDQDSGTAGAAEAAPTGDRWEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00094380;
90% Identity
iTF_00096956;
80% Identity
iTF_00096956;