Acol001204.1
Basic Information
- Insect
- Anopheles coluzzii
- Gene Symbol
- -
- Assembly
- GCA_016097175.1
- Location
- CM027927.1:32790323-32791783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6 3.1e+02 1.8 9.0 1 23 49 71 49 71 0.98 2 11 8.4e-05 0.0044 17.1 5.4 1 23 79 102 79 102 0.97 3 11 5.6e-05 0.0029 17.6 1.7 1 23 105 127 105 127 0.97 4 11 0.0021 0.11 12.7 0.4 1 23 133 156 133 156 0.98 5 11 4.7e-05 0.0025 17.9 0.4 2 23 163 184 162 184 0.97 6 11 0.00013 0.0068 16.5 7.4 1 23 190 213 190 213 0.95 7 11 0.0001 0.0054 16.8 2.1 1 23 218 241 218 241 0.96 8 11 0.11 5.7 7.3 2.4 1 23 247 269 247 269 0.95 9 11 2.7 1.4e+02 2.9 0.1 2 21 276 295 275 296 0.91 10 11 3.7 1.9e+02 2.5 2.0 6 23 305 323 305 323 0.92 11 11 0.002 0.1 12.8 1.0 2 21 351 370 351 371 0.95
Sequence Information
- Coding Sequence
- ATGCTCCCCGAAGGAATGAACGATCGCAATGAAGATGATATTGCTGAAGAATCTGTCGACGTGTTGGAGGCAATAAGCGTAGCAAAATCGGCGGAAAATAAGTCTACCAGAACCCTACGAAGTAGGCGACAGAAAGGAGAAATGCATCAGTGTCAACATTGCCCATTTACAACACATCTGCTGAAAGCGTTTAAGCAGCACACAAAGAAGCATGAAAGCAAAGAACCCACCCAACACACCTGCAAGCGTTGCAACGAAACGTTCACCACAAAGCGCGACTTGCTGCAGCACAAACGGTCCACCCATCGGGATCACATGTGCGATACGTGCGGGTTAGCGTTCGACACCAAGTTTGCGCTGGAAACGCACCGCAAACGGCACGAACCAGTACGCCCGTACAAGTGCGAATACTGCCCGCTGGAGTACTACACCAAGGCGGAACAGCTGCTGCACGTTCGCCGGCTGCATCTGAAAGCGTTCGAGGTAAGCTGCGCCGAGTGTGCGCTAACGTTCCGCACGAAGCAAATGCTTGCGCAGCATATGAAAACGCACACGAACCAACGGACGCACACGTGCACTGTTTGTGGGTTTAGCTTTAAATCACATACGCACCTGAACCGGCACACGAAGGAACTGCACCGGGGGGTGGTGTATGAGTGTGATCATTGCAGTGCGTCGTACCGGCGCAAGGATAAGCTCCGAATGCACGTGGAAAAAATGCATAATATTCAAACGTACTTTGTCTGTAATATTTGCCTCCATTCGTACGATACGGATGAAAAGCTGCAAGAGCACAAAGCGCACCATCAAAATCCGAAAGATTTACAGTGTGGAGTGTGTCTGGGGGCGTACAAGACGAGGGAGGAATTCGACGACCATCTATGTATCACGTATCGTGAAAACTACGTATGCTGCGAGCGCGATTTTAGGTATCACTTTTTCTACAACAAACACATGTTCCTGGCGCACGGACAGCAGACGAACGTGCGCGTCAAACCCGCGGATGGCATGCTGCTGGGACAGTATCGTGCAAAGCGGAAACAAGCAGAACGCTGTCCAAAATGTGAGCAAGAGTTCCCAACCCGACAGCAGAAGAAAAAACACATGCAAAGCTGTGGTGCGCTGGAGTACGAGATCGTTGAGGTTTTTGCGTCCGTGGACAATGGGAGTGCTACCATCGGTGGGGAATAG
- Protein Sequence
- MLPEGMNDRNEDDIAEESVDVLEAISVAKSAENKSTRTLRSRRQKGEMHQCQHCPFTTHLLKAFKQHTKKHESKEPTQHTCKRCNETFTTKRDLLQHKRSTHRDHMCDTCGLAFDTKFALETHRKRHEPVRPYKCEYCPLEYYTKAEQLLHVRRLHLKAFEVSCAECALTFRTKQMLAQHMKTHTNQRTHTCTVCGFSFKSHTHLNRHTKELHRGVVYECDHCSASYRRKDKLRMHVEKMHNIQTYFVCNICLHSYDTDEKLQEHKAHHQNPKDLQCGVCLGAYKTREEFDDHLCITYRENYVCCERDFRYHFFYNKHMFLAHGQQTNVRVKPADGMLLGQYRAKRKQAERCPKCEQEFPTRQQKKKHMQSCGALEYEIVEVFASVDNGSATIGGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101219; iTF_00099865; iTF_00102622;
- 90% Identity
- iTF_00101219;
- 80% Identity
- -