Acol014110.1
Basic Information
- Insect
- Anopheles coluzzii
- Gene Symbol
- -
- Assembly
- GCA_016097175.1
- Location
- CM027930.1:32747611-32749877[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1 54 4.2 0.6 2 23 196 218 196 218 0.93 2 12 0.00052 0.027 14.6 0.2 1 19 229 247 229 250 0.95 3 12 1.2 61 4.0 0.2 2 19 375 392 375 394 0.84 4 12 0.00015 0.0078 16.3 1.2 1 22 403 424 403 424 0.96 5 12 0.41 21 5.5 2.3 3 23 455 478 453 478 0.88 6 12 0.024 1.3 9.3 2.7 1 20 501 520 501 522 0.93 7 12 0.00018 0.0092 16.1 0.5 2 23 530 552 529 552 0.96 8 12 3.1e-06 0.00016 21.6 0.5 3 23 561 581 559 581 0.98 9 12 0.0015 0.079 13.1 0.1 1 23 587 612 587 612 0.96 10 12 1.3e-05 0.00066 19.7 3.4 1 23 618 640 618 640 0.98 11 12 0.55 29 5.1 0.9 1 23 646 671 646 671 0.91 12 12 0.052 2.7 8.3 0.7 1 23 677 700 677 700 0.95
Sequence Information
- Coding Sequence
- ATGACTCAACATGATGCTGCATCTCAGTGTCGAGTTTGTGATAAAGCGATCCGCGCCCAGAAACCGGTACACATCTTTTCGCCGCTCGTGGGAAACGGGAAGGAAGCGGATATCAGCACGAAAAGCATCGCCGAGATGATGAGCGAATTGGCGGATGTAACGATCAGTCCCACTGATGAACGATCGAAGTACATCTGCTCCGTTTGCTTAAAAGCGCTCGAGAAAGCCTTTCAACTACGTCAACAGATACGAGCCGCCGAAAGGGCTGAGCCGACGCACTTGCAATCGATTCAGATAGAAAACATCGCCGAGCAGGACTACAGTTTGGAGTATTTGGATGAATTTAAAGATGAAATCGATAGCAGCGTTATGCTGCTCCGGGATACACTTACCGCCCTATCCGACGATCTTGGTGGTGAAAATGAGCTTCCCGAAAAACAACCAACCGTTCGTGCACTATCCGAGGTTGAAGAGGACGTCGAAGCGATCGAACAGGGCAAATTTACGTTCATTGTGCCACCGCCGGACCTGATCGCCATTCGGATTGCATTTGAGCACTTTGAGTACTTGGAGCTGCGTGGCGAACGGTGTTGCGGCTGTCCACACATTGCTGCGTCTCGCGATGCACTGATGGTGCACGCAAAGGAAACGCACTCCCAAAACTATTACCCCGACGACAGTAGCTACACGTGCCCGATGTGTTACCAAAAGTTTGCCACGGCCAGTGCACTGGAAAGCCACAACCAGTACTATCTGTACAGTGATGTGTTTCTGTGCAGCGTTTGTCGCAATGCGTTCAACTGCCAGAACCGGCTCATGGTGCATCTACAGGACAGCCATCAGCTAGAACCGTCGCTTAATGATGGAGTGGAGATTGGGCCGGCGCAAAATGAGGGTGAACCGCATTTGCAGGAAAAAGCGTCCTCGGTAGCTGGGACCAATTTACCATTAACATTACCGGAACCAAAGTTTATAAAAGAAACGCGCGTATATCCACAGTATCGGCTATACTGTCTCAGCGCAGAACGGTGCTGCGCCTGTGGCGTTTATGAAGAATCGCTCGAACGGCACACCTCCGAATGTCACACAGAAATGAGCCAGTCGGAAGCGGATGGGCTGCCCCGGTGCGTTGTTTGCAGCCGTACCTTTCCCACCCACCAGGAGCAAATCCTGCACGAGGAGGAGCGCAGAAATACGAAGCAAATTTACCAATGTCGAAAGTGCGAAAAGCTTTTCGCTCGAAAGAATCAGCTTCTGAAGCACTTACAAACAACAGAGTCCGGTTGCAATGGCCAAGAGGGAAAGATTGAAACGACCATAAAGGATGGCGAACGGGACGGCGTTTCAGGAAATTGCTTTTGCTGCTGCTTTGCACGCTGCAAGGAGGAGTACGCGAACGAACGGGATCTGCTCGACCACGCCCGGACCGTGCACGGCGGAAGAAGAAAGGAGAATGAATGCAAGCTGCAGGAACGGTATGGGACGGCAATACCGGAACGGCACTGCTGTCCCATCTGCCGGCGAACGTTCGACAGTGAGGAAAAGGTGCAGAAGCATCGCAGCTATAAGCTCGCCCTGCCCAAGCAAACGTGCCGCCAGTGTGGCCGGGTGTTCATGAAAGCGTCCGGGCTGCGGGAGCACCAGCTAAGGGAACATTTGAATCTGCAGCTAGAGTTTGGGTGCGAAGTGTGCGGGAAGCAGTTTGTAAATCGGGCCACGCTGAACAAACACCGCCGGGTGCACGAACCGTCCCGCAACTATCCCTGCTCGGTCGAGGGCTGCGGGATGCTGTTTCGCGACAAGCCGCTGATGCAACGGCACTATCGCAATGTGCACTCGGTGGTGCAGGCGTACGAGTGTTCACACTGCCAGAAGCGCTTCCGCACGAAGGAGTCGCTCGATATACACGAGCGGAGTCATACGGGCGAGCGACCGTTTGCGTGTCGGTACGAGGGGTGCAGCAAGGCGTACGCACACGGTACCGATCGGAAGCGGCACGAACGGTCGGCGCACACGGGCGAGAAGCCCCACACGTGCACGGTTTGTGGGGCGGGATTTCTGCGCCGGCGGGAGATGCGGCTGCACCTGGAGAAGGTTCACGAATGGCAGGAGAAATAA
- Protein Sequence
- MTQHDAASQCRVCDKAIRAQKPVHIFSPLVGNGKEADISTKSIAEMMSELADVTISPTDERSKYICSVCLKALEKAFQLRQQIRAAERAEPTHLQSIQIENIAEQDYSLEYLDEFKDEIDSSVMLLRDTLTALSDDLGGENELPEKQPTVRALSEVEEDVEAIEQGKFTFIVPPPDLIAIRIAFEHFEYLELRGERCCGCPHIAASRDALMVHAKETHSQNYYPDDSSYTCPMCYQKFATASALESHNQYYLYSDVFLCSVCRNAFNCQNRLMVHLQDSHQLEPSLNDGVEIGPAQNEGEPHLQEKASSVAGTNLPLTLPEPKFIKETRVYPQYRLYCLSAERCCACGVYEESLERHTSECHTEMSQSEADGLPRCVVCSRTFPTHQEQILHEEERRNTKQIYQCRKCEKLFARKNQLLKHLQTTESGCNGQEGKIETTIKDGERDGVSGNCFCCCFARCKEEYANERDLLDHARTVHGGRRKENECKLQERYGTAIPERHCCPICRRTFDSEEKVQKHRSYKLALPKQTCRQCGRVFMKASGLREHQLREHLNLQLEFGCEVCGKQFVNRATLNKHRRVHEPSRNYPCSVEGCGMLFRDKPLMQRHYRNVHSVVQAYECSHCQKRFRTKESLDIHERSHTGERPFACRYEGCSKAYAHGTDRKRHERSAHTGEKPHTCTVCGAGFLRRREMRLHLEKVHEWQEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101186;
- 90% Identity
- iTF_00101186; iTF_00107216; iTF_00104635;
- 80% Identity
- -