Acol011433.1
Basic Information
- Insect
- Anopheles coluzzii
- Gene Symbol
- -
- Assembly
- GCA_016097175.1
- Location
- CM027930.1:17729530-17734355[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.6 1.9e+02 2.5 0.9 2 23 238 259 237 259 0.93 2 23 3.6 1.9e+02 2.5 0.2 12 23 289 300 285 300 0.86 3 23 0.034 1.8 8.9 5.1 2 23 305 327 304 327 0.95 4 23 0.042 2.2 8.6 0.4 1 23 336 358 336 358 0.98 5 23 4.1e-05 0.0021 18.1 0.7 1 23 366 388 366 388 0.98 6 23 1.4e-05 0.00076 19.5 0.8 1 23 394 416 394 416 0.97 7 23 7.6e-06 0.0004 20.4 2.2 1 23 422 444 422 444 0.98 8 23 1.2e-05 0.00064 19.7 4.1 1 23 489 512 489 512 0.97 9 23 0.015 0.78 10.0 0.8 1 23 518 540 518 540 0.97 10 23 2.5e-06 0.00013 21.9 1.0 1 23 546 568 546 568 0.98 11 23 0.0011 0.058 13.6 2.5 1 23 574 598 574 598 0.95 12 23 0.53 28 5.1 0.3 2 23 993 1014 992 1014 0.95 13 23 0.22 12 6.3 0.4 1 23 1020 1048 1020 1049 0.93 14 23 0.0012 0.064 13.4 1.8 3 23 1054 1074 1052 1074 0.97 15 23 0.00017 0.009 16.1 2.5 2 23 1080 1101 1079 1101 0.97 16 23 0.00011 0.0056 16.8 0.4 1 23 1109 1131 1109 1131 0.99 17 23 0.0026 0.14 12.4 4.6 3 23 1139 1159 1137 1159 0.97 18 23 0.82 43 4.5 1.0 2 14 1166 1178 1165 1188 0.76 19 23 0.53 28 5.1 0.2 2 23 1217 1241 1216 1241 0.96 20 23 0.00022 0.012 15.7 1.3 1 23 1245 1267 1245 1267 0.97 21 23 6e-06 0.00031 20.7 0.9 1 23 1273 1295 1273 1295 0.99 22 23 4.6e-07 2.4e-05 24.2 0.9 1 23 1301 1323 1301 1323 0.98 23 23 0.0002 0.01 15.9 3.4 1 23 1329 1352 1329 1352 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAGCTGCAGGGCGAAGATGCTGCTACCACGTCCTGTCCAATGGAGTCGTACTCGACCGCACCGCAAACAGCCGTCCTGCAGCGATTCTGCCGACTGTGCATGCGAGAGTTCCCGTTTCTGCTGCCGTTCAATGCTACACTCAAAGAAATCGCGCTAGCCGACATGCTGGAACGACTGCTGGGTTCGTTCAAGCTAAAGCAAACGCCCAATCTGCCGAACGGCGTCTGCTCGCACTGTGTCGCGAAGCTGGACTACGCGTACCACGTACAGAAGGAGCTGGTGCGGAACGAGCAGCGCTTGCGGCATTTCCAGCAGGAGGGAAATTTGTTGCAGAAATTGTTTGAATATCAAGCTAACATAACAGTGACCAAAGAGGATGGGGGCGGTGATCGAATGGTGGCGGGGTATGGCAGTGGACTGCTGCCGGAGACGATCCAGCTCGATCCGAAGCAGGACGTACCGGATATGGCCGATGCGGAGCAGCGCGCGGCAGCTGCGTACAAAACGCTGGTACCGCCGGGCGGCTGGGCTGTAATGGAGTGCGATTGTCCGGAGAAATCGATGGCCGCATCCACCCGGCGAGCTCCGCGGTCCATGAAACCCGCGCGTCCGCAGCAGCGAACTTTGCGCAATCGCCACGTGCTCCGGCAAGCAATTGATGCAGAAAATCCAACCGCTTTAAACGCAACCGCCATTGATCCCTGTAAATGCTACATATGTAATATCGTGCTGGAGTCGGAAGAAGACTGTCGGGCTCATTTGGCCGTGCATGTGGACATGTTGCCGCATGTTTGCCCCGAGTGTCGCACGCCGAATGCGACGGAGGAGGATGACGACGCGCCGAGTACCCCAATCACCTCGCTGGCAATGTTACAGCGCCACTACCGCATGCACTCCTACCCACTGAAATGTCCGCACTGTCCGCAACGGTTCCGGAAGCACACGTCCGTCTACACGCATGTGCGCTATCGGCACGAAATGTTCGACAATCCGGAGGGTTTCACGTGTGACGTGTGCGGCGTAACGATGCAGTACCGTCCCTCCTTCATGTACCACATGCGCATCCACTACCACGAACAGATGGGCACGTTCCGGTGCCAGTACTGTGATCGTGTGTTTGGAACACGGGCCCGCCTAGAGCGTCACGAACGGGCACACACGGGCGAGCGGCCGTTCGCTTGCCATCTGTGCCCGAAAACGTTTGTGCACGCGGGCCAGCTGGCAACGCACATCGCGCGGCACAATAACGAGCGCGGCCACCGGTGCTCGCAGTGCGGCAAAGCGTTCTACAGCAAAGCGATGCTGCGGCAGCACCTGGAAACGCACGAAACGCACGAAACGCGCAAAGCGAGCAACGCGGCGAAAGTGCGCCAACGGCCCTGCGCGTATGCGGGCTGTACGCACGTGGCGCGCACGTATCAGGCGTACTACATGCACCGGCTGCGGCACGAGATGGCGCACCGGTGTGAGGAGTGTGGCCGCCGGTTTGCGCGAGCGTGCGAGCTGAGACGGCACCGGCGCATCTATCACTCCTCGGAACATCCGTTCCGGTGTGAGCCGTGCGGCAAAACGTTCCTTAGCTCGCAGAGCTACCGCGAGCACATGGACTCGCACGCCAATGTGCGCCGGTTCGAGTGCGAAGTGTGCGACAAAAAGTTTGTGCGCCGGCGCAACCTGGTCAACCATCGGATGTCGCACACGAACCAGCGGCCGTACCGGTGCGAGTATTGTGACAGTGCCACGTTCAAGTATAAGAGCGACTTGAACCGGCACCGGAAGGACAAGCATGGCCAGGCGGAGCACGGCGAGCAGACGTCGGCGTTGGCACAAGAAGACGAAGACGAAGCGGACGGGGAAAAGATTGTGCTGATGAATGCGGACGATCCCATCATGGATGTGATACTGGAGGAAAGTGCGCCGCAGGGCATACTGATCAACGAGAACATTGAGCTGGACGGGACATACGGGGAGGAAATTGAGACGGTCGAAGAGTCGATCGTCGTTGAGCAGCCGATCGTTAGCATCGTCACGTCCGATGCGTTTTGTCGAATATGTTTGCTGAAGCGGCCCCACCTGAAGTCGCTGATGGAGCGGGTCGATGGCGTGATGATACCGGAAATGCTGTACAAAGTGTGCGGCCGCCAGATCGAGGTGCAGGAGGGCTACCCGCGCAGCATCTGCCAACGGTGTCTGTGCCAGTTGGACTGTGCGTTTAAATTTTTGAACGAGTTCCACCAGCAGGACGAACGTTTGCGCAGCTTCTACTGGAGCGGTTCCGTGGTGAAACGGCTGCAGGAATACCAGAAGGAAGGGAGTGAAACGGTAGAAAAACGGTTTGCCGAACTGGTCACCCGTAATGCGAAAATGCTGAGCCCGCCAACTAAGCACATGTGCCACCGGGAGACGAACACCAGCCAGCGCCCCAAACTGGTCGATGCTAGTACGCTGACAGACAAGGAGGCGGTGGTGGATCTAGCGCTGGTCAAAACGGAGGACGGAAGCGTAGTGTCCGACGATTTGGTGGTGGAGGACGAGGAAGGAGTGTATCTCGAGTATGCGGACGATTTCGATGCATCCATCAAGGACGAGCAGCTGGTGTCGATGAAAATCGATGTGCTGCAATCGGGCGACGAGGCGGAATCGGACGCCGAACCCAAGGAGCGCAGGAAGCGAGCGCCACATACGGCCACCAAAAGCACCCCGTCGTCGCGTTGGTCGACTCGGACAAGCCAACCTTTGCCGAAGAAGCAGCAGGAAGACAGCGATACGGATGATCCGGCTACGGAGGAAGATTTCAAGGAGCTGTTCGAGGAAAGCGAACCAGACACTGTGTTAGAGATGGACGAGGATGAGGAAGACGATGATTTTGATGAAGAGGATGAGGAGGAGGATGAAGAGGAAGATGACGAGACTGAGGAGGCGAAGCACATGGTGGAGGAGCAGACGCCGCCGTTGCAGCTCGATCCGCTGCGCTGCTACATCTGCGACCGAAACGAGGAATCGAAAACGATGCTGGAGCAACATCTCGATATGCACAGCCTGATGCTGCCGTACGAATGTAGAATTTGCCAGGTGGAGGGTGGACCCGCCCGCACGCTCAAAACCATCTCCTCCCTGCAGAACCACTTCCGCTCGCACCACTACCCGTTCGGGTGCGGCACTTGCGGCAAGCGGTTCCTGCGCAAAGCGCACCTGATGACGCACATGGACAGCCACAACGAGGAGCACCTGGAGTGTGGCGAGTGCGGGCGACAGTTTACGCACCGCAAAACGTGGCAGAACCACCTGAAGCGCCACGTGGCCGTGCGGACTGGCGCGTTCAAGTGCGGCACCTGCGGCCGGGCGTTCGGCAACCGGGCCCGGTTGGATCGGCACGTGCGCTCGCACACCGGCGAGCGGCCGTTCGGGTGCAAGTACTGCGACAAGCGGTTCTACGACCGCCACCAGCAGCAGCGCCACACCGAGCGGCACTTCCGCGACCAGGAGTGCAGCTGCGAGATTTGTGGCGAAACGTTCCCGGGCGCCAAGAAGCGCGACCAGCACAAGGTCGAGCAGCATCTGAGCGGCCCGGAGCTGGAGGCGTTTTTGGCGCGCAAATCCAGACAGCGGTCGTACAAGAAGCCGGCCGTACTGAAGGATAAGAAGTGCCCGTTCGCGGGGTGCGATTACGTCGCCAACACGTACGGCGCGATGTACGTGCACAAGCGCACCAAGCATCAGCCGGTGCACAAGTGCGAGCTGTGCAACAAATCGTACGCCTTCCTCAACCAGCTGCGGGTGCACATGGCGCTGCACACGGGCGAGAAACCGTACCAGTGTGAGATTTGCGGGCGCAGCTTCCGCCGCGGGTTCAGCTACAAGGAGCACATGGAGATGCACAACCCGGAGGCGAGCTACAACTGTCCGACGTGCAACAAAAGCTTCAAGCGGCCCCGGTACCTGCAGGCGCACGTGCTGACCCACACCGCGGTGCGCAAGTTTTCGTGCGAAATCTGTGGCAGCTGCTACAAGACGAACGGGGAGCTGAAGAAGCACACCAAGAACAAGCACGGGCTGGACATTGTGGAGGAGGAGGTGCGCGAGATAGTCATCGATGCGGAGGATACGGATATATCGTCGTTCGTTGTGGAGTACGTTTGA
- Protein Sequence
- MEQLQGEDAATTSCPMESYSTAPQTAVLQRFCRLCMREFPFLLPFNATLKEIALADMLERLLGSFKLKQTPNLPNGVCSHCVAKLDYAYHVQKELVRNEQRLRHFQQEGNLLQKLFEYQANITVTKEDGGGDRMVAGYGSGLLPETIQLDPKQDVPDMADAEQRAAAAYKTLVPPGGWAVMECDCPEKSMAASTRRAPRSMKPARPQQRTLRNRHVLRQAIDAENPTALNATAIDPCKCYICNIVLESEEDCRAHLAVHVDMLPHVCPECRTPNATEEDDDAPSTPITSLAMLQRHYRMHSYPLKCPHCPQRFRKHTSVYTHVRYRHEMFDNPEGFTCDVCGVTMQYRPSFMYHMRIHYHEQMGTFRCQYCDRVFGTRARLERHERAHTGERPFACHLCPKTFVHAGQLATHIARHNNERGHRCSQCGKAFYSKAMLRQHLETHETHETRKASNAAKVRQRPCAYAGCTHVARTYQAYYMHRLRHEMAHRCEECGRRFARACELRRHRRIYHSSEHPFRCEPCGKTFLSSQSYREHMDSHANVRRFECEVCDKKFVRRRNLVNHRMSHTNQRPYRCEYCDSATFKYKSDLNRHRKDKHGQAEHGEQTSALAQEDEDEADGEKIVLMNADDPIMDVILEESAPQGILINENIELDGTYGEEIETVEESIVVEQPIVSIVTSDAFCRICLLKRPHLKSLMERVDGVMIPEMLYKVCGRQIEVQEGYPRSICQRCLCQLDCAFKFLNEFHQQDERLRSFYWSGSVVKRLQEYQKEGSETVEKRFAELVTRNAKMLSPPTKHMCHRETNTSQRPKLVDASTLTDKEAVVDLALVKTEDGSVVSDDLVVEDEEGVYLEYADDFDASIKDEQLVSMKIDVLQSGDEAESDAEPKERRKRAPHTATKSTPSSRWSTRTSQPLPKKQQEDSDTDDPATEEDFKELFEESEPDTVLEMDEDEEDDDFDEEDEEEDEEEDDETEEAKHMVEEQTPPLQLDPLRCYICDRNEESKTMLEQHLDMHSLMLPYECRICQVEGGPARTLKTISSLQNHFRSHHYPFGCGTCGKRFLRKAHLMTHMDSHNEEHLECGECGRQFTHRKTWQNHLKRHVAVRTGAFKCGTCGRAFGNRARLDRHVRSHTGERPFGCKYCDKRFYDRHQQQRHTERHFRDQECSCEICGETFPGAKKRDQHKVEQHLSGPELEAFLARKSRQRSYKKPAVLKDKKCPFAGCDYVANTYGAMYVHKRTKHQPVHKCELCNKSYAFLNQLRVHMALHTGEKPYQCEICGRSFRRGFSYKEHMEMHNPEASYNCPTCNKSFKRPRYLQAHVLTHTAVRKFSCEICGSCYKTNGELKKHTKNKHGLDIVEEEVREIVIDAEDTDISSFVVEYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -