Acol003075.1
Basic Information
- Insect
- Anopheles coluzzii
- Gene Symbol
- -
- Assembly
- GCA_016097175.1
- Location
- CM027927.1:38119028-38120644[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.22 3.9e+02 0.6 0.0 3 14 208 219 207 222 0.88 2 4 1.4e-07 0.00024 20.4 0.2 4 36 273 306 271 309 0.88 3 4 0.00013 0.23 10.9 0.0 21 42 339 360 326 362 0.85 4 4 7.7e-12 1.4e-08 34.0 0.0 4 38 382 416 380 421 0.94
Sequence Information
- Coding Sequence
- ATGGCGAACAGCTCCTGCTTGACGTGGCTCAACTTTCGCGAGCACATGCTAAACACCTTCTGCGGAATCTACCGCACGCAGCAGCACACCGATTGCCGCTTGATCGTACCCGACGGTGAGCTGTACGCGAACCGTCCGATCCTGTGCATGGCATCCAGCTTCCTGGAGACGATTCTGGACGGCCTGCCTACGATCGGTGCGGAAATGGTAACGATTGTAATACCGGACTTGACGCTAGCGACGTTACGCGCCGTCCTGCAGTTCATTTACACCGGGGAAGCAAGCGTACGGTCGGACGAAATGGCATCGTTTGTGGAGGCCTGCAGCTTTCTGCAGCTGCGCGGAGTGCGTTTTATCGCGAATCAGATTGTGGGCATACGATTCGGCAAGACTGTTGGTATGGTGTCGGAGGAGCTTATTCCTGCCAGCGAAGGTTTGGAAGCGACGGCATGCCCAAGGGAAGAACTGTTCGTTGCGCAAGTGGAGGAACAGGCAGAAGAGGCTGAGGAAGAGGAGGAACAAACAGAAATGCCCATAACACAATCACAGGTCCAACCTGTTGAATGCTTCATTCCAGAATCGAGCGAATCCGTCCAAGAACACGTTGAAGAAATTCCACAGGAACGGTTAACGCAAGCAATTGAAGCAATTATAAAGGACCACGAAAGCTATGAAATCACATCCGTTCCATGTGCAATCGACACCACCGTCCCCACCCCGTCGGAAACAAATACAACGAACCGTCCGCCGTTCGAAGATGAGCTGGAACAAGCAAACCCCGAACCACCACTATCCGACCCTGCCAGTTACGATGCACGTCTTGCGTTAGCGATGGATGCAATCCTTCACCACGGCATTAGCTACCGGATTGCCGCCAGGCAGTACAGCATCGCCAAAACGGTACTGTGGCGCAAGGCGATGAAAATGCCGCGACCGGTTCGGGCCGGCTCCCCGAAGCTGAGCGCTCAACGGCGGGAAGCGATCGATGCACTGAAAACGGGCGAGAAGCTCGCACACGTGAGCCGACGGTTCGAGATTCCGCTGTCGACGCTGCACCGGGAAAAGCAACGGCTGTACAGCAAGGGCGCACTGCCGAGCAATGTGTCGCTGAAGCTGCGCGGTAAGGATGAGTCGGTGCGGAAGCGGTTGCAGGAGGCGGTTGGTGACTGTGTGGCGGGCAGGATTTCACTGTCCGAGGCAGCCCGGACGTACGGCCTACCGAAGACGTCCATCTGGCGCAGGGTACGATCGCTACAGACCAGTGGCTGCAGTAGTAGCGGAATGAAGGAGGATAATTCTGCAAGCGACGCAATGGCAGAGCGACCGAATCAATCGGAAGAGGCTGAGGTGGAGGAGGAGGAGGATGATGATGATGCTAAGCTAACGATGGGCGGCATCCTGTTAAGGGGGAGTGATACGCTTCAGGTTGGGGCAGGATATATGTCCGATGAGAATATTTCGGCGAGCGATTTAGCGCAACTAAGGTATCAGCTGACCTCGAACTATGACGATCACGTATTGCATGATAGTTTATAA
- Protein Sequence
- MANSSCLTWLNFREHMLNTFCGIYRTQQHTDCRLIVPDGELYANRPILCMASSFLETILDGLPTIGAEMVTIVIPDLTLATLRAVLQFIYTGEASVRSDEMASFVEACSFLQLRGVRFIANQIVGIRFGKTVGMVSEELIPASEGLEATACPREELFVAQVEEQAEEAEEEEEQTEMPITQSQVQPVECFIPESSESVQEHVEEIPQERLTQAIEAIIKDHESYEITSVPCAIDTTVPTPSETNTTNRPPFEDELEQANPEPPLSDPASYDARLALAMDAILHHGISYRIAARQYSIAKTVLWRKAMKMPRPVRAGSPKLSAQRREAIDALKTGEKLAHVSRRFEIPLSTLHREKQRLYSKGALPSNVSLKLRGKDESVRKRLQEAVGDCVAGRISLSEAARTYGLPKTSIWRRVRSLQTSGCSSSGMKEDNSASDAMAERPNQSEEAEVEEEEDDDDAKLTMGGILLRGSDTLQVGAGYMSDENISASDLAQLRYQLTSNYDDHVLHDSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00102480;
- 90% Identity
- iTF_00102480;
- 80% Identity
- iTF_00095756;