Acol001774.1
Basic Information
- Insect
- Anopheles coluzzii
- Gene Symbol
- retn
- Assembly
- GCA_016097175.1
- Location
- CM027927.1:14176328-14196305[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-19 5.5e-16 58.4 0.0 18 89 9 78 2 78 0.93
Sequence Information
- Coding Sequence
- ATGAAACGTGAGAAGCCGCTCTGCACTCCCATCAACCGTTTGCCGATCATGGCCAAATCGGTGCTGGATCTGTACGAGCTGTACAACCTCGTTATCGCACGCGGAGGGCTTGTCGACGTTATCAACAAAAAGCTGTGGCAAGAAATCATCAAAGGACTGCATCTACCTTCCAGCATCACCAGCGCTGCATTTACCCTACGAACACAGTACATGAAGTATCTCTATCCGTACGAGTGCGAGAAGAAGAACCTGAGCACACCGGCAGAACTGCAGGCGGCCATCGATGGAAACCGGCGCGAGGGTCGTCGCTCTAGCTATGGCCAGTTTGATTCGCCCTCAGTGCAACGTTCGCCGATTCCGCAAGGCATTTCGCAGATGCCGCCCCTGTCGCTGGTGTCGCACGTCAACCAGCAGCAGCACCATCACCGGCTGCTGCCACCGGTCGGCCAAATACCGAACATGCTGCCGGCCGAGTTCGAGCAGCGCATGCTGAACTACATCAAGATGTTCCAGCCGAAGGAGATGGGCCGCTCGCAGAGCCCGGACAAGCTGTCCGCCCTGAACGCGATCGACATTTCGCGCGTCGCCCTGTGGAACATGTACAACCCCAGCCCGAACAGTCCACCGAACTCGCTCAACACTAGCCCGGAAAACAATATGCAAAGTGCTCTCGATCTGTCGGAATCGCCCGATCACGCAATGGCAGCGATCAAGCGCGAACGGGACCACCCGGTCGACTTTAGCGATCCGCGTGACTACGGCAACGGGCTGGGACCGCCGGCCAAGCGCAGCCACCATCATCACCACTCGCACCATCACAACCGCTCGCTAACGCCCCAGAAGCTAAACAGTTCCTCGCAGGACGAAGATGACGCCCGGTCGGACAGTACACCGGTCAACCTGCGCGAGAATGGGTCGCACGGACGTCGTGCCACGCTCGACGACGACGGTGACGACGAGGAGGACGAAATGGAGGACGAAACGACCGACGAGGACATGCTGCGGGCATCGTTTGCTGCGGCCGCCGCCGCCGCTGCCTGCTTACAGTGTGACGCTAGCAAAGGCGACCAGAAGCTGGTGGTCACGATGGAGTTCAATGGCGTCCAGTACGAGGGTGTCCTGTTCGCGAACCCGCTCTCCTCCGCCAACCTGTCAGCGCCGCCGGCCTCGACGCCGCCCTCCTCGTCCGTGTCGGCTACCTCAGCCTCCCCGATCGGTTCCATGGTATCGCCGGTCAAGTCCAGTGCCGCCGCCCACATCGCGTCACCCCTGGACGAGCGTGATTCGTCCGCGTCTGCGAACATTGACGTGGCGGCGATGGGCAGTGCACTGGCAGCAACCGCAACCGTGACCAGCAACGCCAGCAGTAATGCCACCTGCATCCAGCAGCAACCACTGGACGGTGCAGTATCGCCACCAGCAGCCCTCTCGATCACTGCACCTTCGGTTGGTGCCTCAAGCCCTGCCAGGTCGTTAGTTTCATAG
- Protein Sequence
- MKREKPLCTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQFDSPSVQRSPIPQGISQMPPLSLVSHVNQQQHHHRLLPPVGQIPNMLPAEFEQRMLNYIKMFQPKEMGRSQSPDKLSALNAIDISRVALWNMYNPSPNSPPNSLNTSPENNMQSALDLSESPDHAMAAIKRERDHPVDFSDPRDYGNGLGPPAKRSHHHHHSHHHNRSLTPQKLNSSSQDEDDARSDSTPVNLRENGSHGRRATLDDDGDDEEDEMEDETTDEDMLRASFAAAAAAAACLQCDASKGDQKLVVTMEFNGVQYEGVLFANPLSSANLSAPPASTPPSSSVSATSASPIGSMVSPVKSSAAAHIASPLDERDSSASANIDVAAMGSALAATATVTSNASSNATCIQQQPLDGAVSPPAALSITAPSVGASSPARSLVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00104182;
- 90% Identity
- iTF_00104182;
- 80% Identity
- -