Achr006609.1
Basic Information
- Insect
- Anopheles christyi
- Gene Symbol
- RREB1
- Assembly
- GCA_000349165.1
- Location
- KB698289:287-8545[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0028 0.17 11.7 0.8 1 23 269 291 269 291 0.98 2 12 0.00034 0.021 14.6 0.9 1 23 307 329 307 329 0.97 3 12 1.2e-05 0.00075 19.1 5.2 1 23 335 357 335 357 0.98 4 12 0.055 3.4 7.6 4.0 2 21 575 594 575 595 0.94 5 12 5.9 3.6e+02 1.3 0.8 1 19 640 658 640 660 0.86 6 12 0.0042 0.26 11.2 0.1 1 23 903 925 903 925 0.98 7 12 4.7e-06 0.00029 20.4 0.6 1 23 934 956 934 956 0.99 8 12 0.00043 0.026 14.3 2.0 1 23 962 985 962 985 0.97 9 12 0.00088 0.054 13.3 2.1 1 23 1606 1629 1606 1629 0.95 10 12 8e-05 0.0049 16.6 0.3 2 23 2121 2142 2120 2142 0.97 11 12 0.41 25 4.9 5.4 1 23 2148 2171 2148 2171 0.96 12 12 5.3 3.3e+02 1.4 2.3 1 23 2370 2393 2370 2393 0.85
Sequence Information
- Coding Sequence
- ATGGACTTGCAAAGTAATAGTGTGGCCAGTGTTGCCACCTCGGTCATGGGACTTGGCACTGCCGATGGCGGGTTTATGCATGCGGTGGTAAAAACCGAAGCACTGGAGGGAACAGATTCACAGCTAAGCGCAGCAGAGAACACCACAGCCGACGAGCCCGAGATGGAGCAAGAGAAAGTGAGTGGCGTGCCGTCGTTGGAAAATgaggaggatgaggaggagcaagaggaggaggaagaggCAGTATCGTCATCTTCGTCGCCAATCGGTGCCGATACGCTGGAGGTCGCCTGCAAAACTGCTTCCCCATCGACGGTGACGATGGCGGGCAGTGGCGAGGATGAGGAGGGCATCGGCAACAACACAACAGCGGCACTGCTGCCCACAGAAGGACACAGTCGCTTTCATCGCCGCAGCAGTAGCAGCAGCGGCAGCAACAGACAGCGGGGCGAACATCTGCACCAGCTCACGGACGACATACTGCGGCGGAAGACGATGAGcaacaacaacaacagcaacactgcaccgaacaacaacaGAGGCAAACGATCACTCGAATCAACGGCAGAAATGTTGCTGCAGCAGCAAAGGCGCCAGGCAGCGGCAGCAGCAACGGGTGGCGGCTCCTCAACTACGTCACCGGTTGCCAAACAGCATCAGCAGCGAGTCGCCAGCCAACAACaggagcatgaggacaacagggtgggggaggaggatgatgaggaggaggaggaggaggacgacgaggaggaCCAGCAGCCAAGAACGATGGTGGCGATAAAGGGATCGGACGCTGGGCCACACTATACCTGCCCGATCTGTAATGCGGTATCGCACACGCAGCGCGCCTTTACCGACCATCTCCGGCTTCACAATGCCGAGTCCGAGTCGGCGGCGACGGCCGTTGCTTCGGCTAGCTTCTGCtgcaagatctgctccaaggtgctatcatcggcgtcctccctagatcgccacgtgcttgttcatacgggcgagcggccgttcaactgcaagtactgcagcctcacgttcaccactaacgggaacatgcatcggcacatgcgcacccacaagtatccgtccgGACGTGACAGCTTCGAGAGTGATGCTGGTGTCGGGATCggtagtggtggtggtggtggtggtggtggtggtggtAGTACCGTCAGCACCGGCGGCGGTGGTGGAGGAGGCTCATCGTCTGATGGGAGTGGTGGTTTTGGTCACAAACCTGCTCGTAACAGTGGGCGTTCGAGCAGTGGCGCTGGGGTTCCAGCGGCAACACGTCACTATCGCAAGAAAAAGGAGGACGGCGTAGATGACGAGGATGCTGATGAGGAGGATGATTATCATCGACAGCCAAAGAAGAGGAAGCGTGCTTTATTCGATGCCGGAGagcagcagcaccatcacaaccaccaccaccacaagcagcagcaggacgagcagcgccagcgccaAGCAGAAGATGAGGCGGAAGGCGATAACTTTACAAACGAGGAAGAGCTGGGCGGCAAGCGGAAGGCATCGCTGGGAGGTGGAGGCGAGCGTGCTTCTTCTCAGCAGTATCGTAAGGTGCGCACCATCAACAACAATCTGCTCGAGGGCTCGGTGGTAGAGAGTGGCCAGCGTTACTGCTGTCCAGTCTGCGTGCGAAACGATTTCGCCAGCATGCTCTGCCTGGAGCAGCACCTGGATCGCGAACATCCAACCATACCGGCCAAATGCCGCCACTGCGAGATCGTGTTCCGCAGTCACAAGGCACTGAATGCGCACCGGTGCAGCAACAACAACTATCAAAACATAACGCCCGGCTTCAAGGATCTCACGTTTGTGGACTTTTCGAGCGAGAAGTTCCCGCTGATAGCGAAGAATCTGTGCGAGCAGAGCATCCGCACGCCGGTTACCAGCCAAAAGTACGAATGTACCCGCTGCTACCGGGCCTTTCCCTGCTCCAAGACGCTCTCGATGCACGCGGCTGACTGTTGCGGGGCGGGCAGTGGAGTGGACCGGCCGGTACACGCTGGCGGACGACGACGCAAGCGGGCGCCGAGTGAATCCGACTCGTCGGAGGTGTCCGGTTCGGATGTCGGGTCGTCCTACGAAGGGCACCGTAACGTTTCTcggcagcaccatcagcagcaacaccatcggcagcaacaacatcagcagcaacatcagcagcagcaacaacagcagcatcCCGTGGACCTACGCCGGGAGGACTTTTTTGCCAACTTGGATCTACAGAACCGTTCCAGTACGGTGTCAGAAGCACCGACGACACCCTCGTCACTGGACAAGTCGTTCTCTTCGCCCGTGCCGGCCCTGAAGCAGGAACCGCTTGCCTCACCGACCGGGTCGACCGCAAACGTACTACCCTCGTACTACACCTCCAACATGGCGCTCTACCATGCACATcagcagcagcagcaacagcaccagcagATGGTGGACAGCGGCAAGGATCTGGCTGACATACAGTCGATCCTGAACGTGACCAAGCTGGGCGGTGGTGTGATTGGTCGCCAGCTGGACGGTGGTAGCCAAACGCCTCTGTCCGGTTTGCTGGACGCGTCGCTACTTAAGGACGGTGCCGGCAGTGACAGTGGCATGTACGCTCACTCGACCGGTTCGCGCGACGAGCCGGAGGAAGCGCAGGATGCGTTCACGGCCGAGTTTCGGCGCATGAAGCTGCGGGGTCAGTTTCCGTGCCGCATCTGCACCGCCGTCTTTCCCAATCTTCGGGCGCTCAAGGGTCACAACCGGACGCACGTGTCGGCGGCTGGACCAGGCCCGTACCAATGTAACATGTGCCGGTACGTGGTGAGCGATAAGGCAACCCTGGTGCGTCACATGCGTACGCACAACGGCGATCGACCGTATGAGTGTGCGATCTGCAACTATGCCTTCACGACCAAGGCTAACTGCGAGCGGCATCTGCGCAACCGACACGGACAGACGACGCGCGAGGACGTGAAGCGGGCCATCATTTACCATCCGTCCGAGGATTCGTCGTGTGATGATCCGCTGAAGAAGCTGCAGCTATTCAATACGCCACCCGCCGACGGTTCCTACACGCCGACCACGATGCTCGGTATCGGTGCGTACCAGGACGACCACCAGTGTCTGCCGGACGGTGCACGGAGCAGCACACCGCTCAAGGATATGCTCATGCCACCGCTGCCGATGAGTTTTGTGGCAGCCGCAGCAGCAGCTGCCGGTACGAACCATCATCATCAGCATCATTCCCTGCTCGACACCAGCCTGCTGTTGCAGACGCCACCGAGCGGTGGCGGCGGTAACGGTGCGTTCGGGTCGAACGTGGCGGCCAAGATACAGGTGAAAAGTTTGGAAAAGCTGAACCAGCTAACACCTCCACAGgacgatgacgatgcgctcgaggaggaggaagaggaagaggaggagctgcaggaggatgcccgtgatgatgatgatgatgaggaggaggatgatgatgaggagatgctgCAGCAGGACAACCAAAACGAGCAGGCGCTACTGCTGCATGAAGAGAAGCCAACGATTGTGAGCAAGAAGGTAGCGATCGCAACCGACGAGACGCCATTGCCAAGAGCCGCCAGCAAGCACTCGACGGTAGAAACGGGCGTCAACCCACGGCCGATCGATTTAAGTATGGATGCGCTAGATTTGAGCAAAAAATCAACGGTCCCTAGCAGCCGCAAGGTGGTGGCACCACCTTCTTTAGCACCATTGCTTTCGACCGACGGCGAGGAGGAGGACGATTACATGACCGGTACACAGCAGCAGCAACGCCACCAACAACACCACCATCTACATCGAACTGTCAATGGGGTGGAGGGGGCTATcagcaaacatactgccactggcaccagcaaatctcagcaacctcagcaacaacaacacatcaaccatccatcgaaagaatcacaggttgtggatgaggatgaggcagtgccggcagcagcagcagcagcggcagcagcagcagcaacagcagcagcagcagccactagtagcCGGCGGTCGGACTTGCCCAAGCTTTCCAAGGTTAATGTGGCCCAACAGCAGCAGCAGTTTCAGTTGTTCAACGACACCTTCGCAAAGCTCGATCCGATGAACTTCTTCCAGTTCTACCAGCTGTACAACTCGCTGCAGCTGCCCTCGTTCCCACTGCACGCCTCACCCTTTCTGCAGAATCACATGCTGGCCGGGTCGGCAGCCGCACTTGGCGAGCTGCTAAGCAAGGACTTTGGGCTCGGCGCCCTGCCAAACCTGGCAGCAGCGGCTGCAGTGTCGGCGGCAGCCGCCGCCTCATCCGGTAGTGGGCGCAATCCCCACCATCCGTTGTTGGTGAACCCGTTCTATCCACCCCCGGTTACCGATACGCCACCGAACAGCGTCACCAAGTCGGGCGACTGTCTGTCAGTGCAGGATCTCGGTACGGTGGCTACCGTTCCCACGCCAAAGCAGCTACTCACGCCTTCCTCCCCGTCGCCGCTGGCCACACCGATCGATGGTAATGGTGGCGGTGGATCCGCTAGCAACAGTATGATTGCCAGCAAGCAGCTCACCTCGTTACAGCAGCAGCGCGGTGGAAGCGGTTCGCCCGTCTCCTCTTcagcagcagcactagcggcggcagcagcagcagcTGGTTTCGGTGTCTCTGCAATGTCtggcggtggtggtggtggtggaggaggtggtggtggtggtggtTCGTCCGGTGTCGGTCCAGTGAAGATGGTGATCAAGAATGGCGTACTGATACCGAAGCAGAAGCAGCGACGCTACCGCACGGAACGACCATTTGCGTGCGAGCACTGTTCGGCTAGGTTTACGCTGCGTTCAAACATGGAGCGGCACATCAAGCAGCAGCATCCACAGTTCTGGTCCCAGCGGCAACGCGGCGGTCATCTGATGCGTCGCAgtggtggtggaggaggaggagcaggaggaggaggtggtggtggtggtggtAGCAACAATAGTGCGAGCATGGTGGCGGCTGCCAACAGCAACTCCGTTGGTTCGTTGGTATCCGCACTACAGGGTGCGTTCGGTGGTGCAGGAATCCATGCTGGCAATGTGGGTGGCGGGGCTAGTGCCATCTCGGATCAGGTGAAGTATGCCATCCTGGCGCAGCAGTCCGGTAAAGGAGGTGGTATGCGAGGTGGCAGTGGTGCCGGCAACGGGCAGGACGCTAGTCATTTGAACCCTTTGCTGCACAACATGATCGTACAGGGTGCTGCGGCAGGACAGTGGAATCAGCAACAGCAACAGCGTCTAAACCACCACCATTACAGTCAGCAGCAGACGCCCGTCATTTCGGCTGCCCTAGCCGGACGGCGGCTGGTCGGTGGTGAGACAGAGGAAGACGATGAGGAGGATGAGCAGACGTTGATGGAGCGGGATGAGCGACCGTACGAAGGAGCTACACCAATCGTTGGCCAACGTTACCGGCGCCGTCGACGTCGGTTGCAGTCCCATCTCGAGCAGGACGGTGAGTTTCTGCTGCGCCGCACTTACGACGATGCCAGCGCACACCGAATAgaggaggaggaggaagaggaggaggaggagcgagaggagaaggagCGGCAGGAACAGCAGGCACTGGTGCAGCAACACTACGATGAAGAGGAGCAGGATGGGGAGGGCGGAGAGGAAGCTGTCGGTGGTGGTGGTGGTGCACTGGACGAAGATGACGAGGAAGATGAGGAGGAGGACGCACAGCTAGTGATTGACGAGGAAGAGGAGTGTGGAGCAAAGGGAGCCGCCGTTGTAACACCGAACGTAGTCAAATCCAAAGAAGTGCTGGGACCGACGCACGGTGGCACCTTAAATCGCATTCTGAAGCAGAAACTGGAAGAGAATCGCTCAACTGCTGGAGGTGGCGGTGGTGAGAAGGTGGCCGCCCTCGTACCGGAACAGAAGCCGTCAGTGCACACGGCGGCGACGGCCCAACAGCAGCAGCTTCTACTGCTACCCAGCAAGCCGTCGAAGCATCCAGCGGGAGGTTCAGCCACCGGCTCACGGAAGGCATCGTCTGGCAGCATTAGCAGCGGTGGCAGCATGATCATCCATCCCGACGAAAGCGGTGCTAGCGACTTGGTGCCAGTGTCAAAGCTGCTCGACAATGCAACCAACCCAGCGCTGGAAAGCTACTTCAGCAGACCGGAGGTACAGGTGCCACTGTCGCAGGATCACAGCGATGAGGAGGGCCTGGTGGCGTCCGGGTCCGCATCCGAGAGTAACAACTCCGGCACAGACGATCCGAACCCGTCGGCGGTGGCACTCGCACACCAGGAGCAGAAGAAGAAGTCGGCCTACAGCTTGGCACCGAACCGTGTCAGCTGCCCGTACTGTCAGCGCATGTTCCCGTGGTCAAGCTCGCTGCGCCGCCACATCCTCACGCACACCGGCCAGAAGCCGTTCAAGTGTTCCCAGTGCACGCTGCTCTTTACCACAAAGTCGAACTGTGACCGGCATCTGCTGCGCAAGCACGGAGATGTCGAGTCGGCCGTCTCGATACCGGTACCGATCGATGATCTGCTCGATCCAAAACCGGAACCGGTACCGGTAGCGGTTGCCGAAGCGATGTGCAAAATGATTACCGGCAAGGGTGGACGGTcggcagcatcgtcaacagctgctgcctcagccaagcaatcgcagcagcagcagcagcatcaggtggaggaggaaagcgaacaacaacagcaacagGATGGTGGTGTAGCTGCTCCGGCCGACGATACAAAAAACGATACGCTGGTAGAGGAACAGCAGCAACAACCCCTCAAGCAGGAACCGGTGGTCGAGCGTAAGAATGGTAGCGATGGTGAGCACCACgaggaggaggaagaggaggaggaTGAACCGGTGGAGGGCGAGGAAACGAAGGGAAGCCGTCGTCCTCGACGATCGCAGCTGAAGGAAAACGGTGACGAAGCGGAACATTCGCATCAGCCATCGGCGGAAGAGCAGCATGGGTCGGAGGGTGCTGCTGCTCGAGATGCTGAGATGGAGGAAGAAGACGAGGGTAAGGAGAGCGACGGTCTGCTGCTGTCGGCGGCTGGCGGCTTTTCCGATCTGCCCTACAAGTGCCACCTGTGCGATGTTTCGACTGCAGAGCGTGTGTCCTGTCTGGAGCACATCAAGCAAACGCACCCGCAGGAATTTACCACCCTAATGGCGAAGGTGTCCCTCGAAACTGCGACGGCATCGGCGACGGAAAGTGAAGCACACACCGGCTCCCCGGACGACGAGGAAAGTGGcaacaataataacaataacagcaccaacaataataacaacaacaacGGTGGCAAGTATCTCGACTATGCCAATCGGAAGGTAGGTCTAAGCAGGCAGCCGGGCGTCCGCAAAGGGAAGTCGAACGGGCATGGCGACGACCCGAACAACAGCGGTACCGATCTTACCGACGACGACGAGTATGAGGACGCGGAGTGCACCAGCCCACTACCATTGTCTAACCAGCAGCAGCACCATCACCACCACCACAACGATACCGCAACTTCTGCGGAGATCCACGCGACGTCAGCAGCAGTTGGAGGGGGTAAGCGGTACCAGCACTTCCAACAGCAGCAGCAGCACTCGGAGCTGATTGGCAACCTGCTCGGCATCAGCGACCAAGGCATCCTGAGCCGGGTGCTGCTATCGTCCGCGTCCGAAGCCGCCAAGCTGCTCGGTGTGGACAAGTGA
- Protein Sequence
- MDLQSNSVASVATSVMGLGTADGGFMHAVVKTEALEGTDSQLSAAENTTADEPEMEQEKVSGVPSLENEEDEEEQEEEEEAVSSSSSPIGADTLEVACKTASPSTVTMAGSGEDEEGIGNNTTAALLPTEGHSRFHRRSSSSSGSNRQRGEHLHQLTDDILRRKTMSNNNNSNTAPNNNRGKRSLESTAEMLLQQQRRQAAAAATGGGSSTTSPVAKQHQQRVASQQQEHEDNRVGEEDDEEEEEEDDEEDQQPRTMVAIKGSDAGPHYTCPICNAVSHTQRAFTDHLRLHNAESESAATAVASASFCCKICSKVLSSASSLDRHVLVHTGERPFNCKYCSLTFTTNGNMHRHMRTHKYPSGRDSFESDAGVGIGSGGGGGGGGGGSTVSTGGGGGGGSSSDGSGGFGHKPARNSGRSSSGAGVPAATRHYRKKKEDGVDDEDADEEDDYHRQPKKRKRALFDAGEQQHHHNHHHHKQQQDEQRQRQAEDEAEGDNFTNEEELGGKRKASLGGGGERASSQQYRKVRTINNNLLEGSVVESGQRYCCPVCVRNDFASMLCLEQHLDREHPTIPAKCRHCEIVFRSHKALNAHRCSNNNYQNITPGFKDLTFVDFSSEKFPLIAKNLCEQSIRTPVTSQKYECTRCYRAFPCSKTLSMHAADCCGAGSGVDRPVHAGGRRRKRAPSESDSSEVSGSDVGSSYEGHRNVSRQHHQQQHHRQQQHQQQHQQQQQQQHPVDLRREDFFANLDLQNRSSTVSEAPTTPSSLDKSFSSPVPALKQEPLASPTGSTANVLPSYYTSNMALYHAHQQQQQQHQQMVDSGKDLADIQSILNVTKLGGGVIGRQLDGGSQTPLSGLLDASLLKDGAGSDSGMYAHSTGSRDEPEEAQDAFTAEFRRMKLRGQFPCRICTAVFPNLRALKGHNRTHVSAAGPGPYQCNMCRYVVSDKATLVRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHGQTTREDVKRAIIYHPSEDSSCDDPLKKLQLFNTPPADGSYTPTTMLGIGAYQDDHQCLPDGARSSTPLKDMLMPPLPMSFVAAAAAAAGTNHHHQHHSLLDTSLLLQTPPSGGGGNGAFGSNVAAKIQVKSLEKLNQLTPPQDDDDALEEEEEEEEELQEDARDDDDDEEEDDDEEMLQQDNQNEQALLLHEEKPTIVSKKVAIATDETPLPRAASKHSTVETGVNPRPIDLSMDALDLSKKSTVPSSRKVVAPPSLAPLLSTDGEEEDDYMTGTQQQQRHQQHHHLHRTVNGVEGAISKHTATGTSKSQQPQQQQHINHPSKESQVVDEDEAVPAAAAAAAAAAATAAAAATSSRRSDLPKLSKVNVAQQQQQFQLFNDTFAKLDPMNFFQFYQLYNSLQLPSFPLHASPFLQNHMLAGSAAALGELLSKDFGLGALPNLAAAAAVSAAAAASSGSGRNPHHPLLVNPFYPPPVTDTPPNSVTKSGDCLSVQDLGTVATVPTPKQLLTPSSPSPLATPIDGNGGGGSASNSMIASKQLTSLQQQRGGSGSPVSSSAAALAAAAAAAGFGVSAMSGGGGGGGGGGGGGGSSGVGPVKMVIKNGVLIPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWSQRQRGGHLMRRSGGGGGGAGGGGGGGGGSNNSASMVAAANSNSVGSLVSALQGAFGGAGIHAGNVGGGASAISDQVKYAILAQQSGKGGGMRGGSGAGNGQDASHLNPLLHNMIVQGAAAGQWNQQQQQRLNHHHYSQQQTPVISAALAGRRLVGGETEEDDEEDEQTLMERDERPYEGATPIVGQRYRRRRRRLQSHLEQDGEFLLRRTYDDASAHRIEEEEEEEEEEREEKERQEQQALVQQHYDEEEQDGEGGEEAVGGGGGALDEDDEEDEEEDAQLVIDEEEECGAKGAAVVTPNVVKSKEVLGPTHGGTLNRILKQKLEENRSTAGGGGGEKVAALVPEQKPSVHTAATAQQQQLLLLPSKPSKHPAGGSATGSRKASSGSISSGGSMIIHPDESGASDLVPVSKLLDNATNPALESYFSRPEVQVPLSQDHSDEEGLVASGSASESNNSGTDDPNPSAVALAHQEQKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSQCTLLFTTKSNCDRHLLRKHGDVESAVSIPVPIDDLLDPKPEPVPVAVAEAMCKMITGKGGRSAASSTAAASAKQSQQQQQHQVEEESEQQQQQDGGVAAPADDTKNDTLVEEQQQQPLKQEPVVERKNGSDGEHHEEEEEEEDEPVEGEETKGSRRPRRSQLKENGDEAEHSHQPSAEEQHGSEGAAARDAEMEEEDEGKESDGLLLSAAGGFSDLPYKCHLCDVSTAERVSCLEHIKQTHPQEFTTLMAKVSLETATASATESEAHTGSPDDEESGNNNNNNSTNNNNNNNGGKYLDYANRKVGLSRQPGVRKGKSNGHGDDPNNSGTDLTDDDEYEDAECTSPLPLSNQQQHHHHHHNDTATSAEIHATSAAVGGGKRYQHFQQQQQHSELIGNLLGISDQGILSRVLLSSASEAAKLLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -