Achr005536.1
Basic Information
- Insect
- Anopheles christyi
- Gene Symbol
- -
- Assembly
- GCA_000349165.1
- Location
- KB697305:4097-10348[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.076 4.7 7.2 3.6 1 21 1501 1521 1501 1524 0.94 2 9 0.008 0.49 10.3 0.8 1 23 1681 1703 1681 1703 0.97 3 9 0.00022 0.014 15.2 2.0 2 23 1706 1727 1705 1727 0.96 4 9 4.9e-05 0.003 17.2 1.9 1 23 1733 1755 1733 1755 0.98 5 9 2.4e-05 0.0015 18.2 3.5 2 23 1762 1784 1761 1784 0.96 6 9 0.0039 0.24 11.3 0.5 1 23 1794 1816 1794 1816 0.98 7 9 9.9e-05 0.0061 16.3 2.8 2 23 1822 1844 1821 1844 0.96 8 9 0.0057 0.35 10.7 0.6 3 23 1858 1877 1857 1877 0.97 9 9 2.7e-05 0.0016 18.1 1.4 1 20 1884 1903 1884 1906 0.92
Sequence Information
- Coding Sequence
- CCATCGCAGTTCACCGTGGTTAAGACGATCGATGTGCACGGTGTACCAAGTTTTCAGCTAAACAACGTAACTCTTGTCAAGCGGGAACTGGTGCAACCGGCTGCAAATTCAGCAGCAGTTccaccgccaccaccaccaccaccaccaccaccacccccacccccaTCATCATCATCGTCCGCCGCTATCGGAACGGTGCAAAATGAGCTGTCGACGATTGGCCCGCTGGGTGACGATTACTCCGAGCCGAGTGGGAGTGGGACTGCTTCCGGTAGCTCGTCGCGGGTGGTTTATCCGAGGTACACGAACGAACTGTACTCGGGACCACCGCCCCCGTACAGTCGCGCCATCTCATCAACGGTGGCTTCCAGTACACATATAACACCTGTTCAGCAAACTTTACAACTGAATTTAACGAAAAACAATGTCGGTGGACTCGGCGTAGTTGGTCAGCAGATTCAGCTGCTTGCGAAAAATCTCTCCGAGACATCCACATCTGCGTTTAAACAGTATCCGTCAGTACAAGCAGTTTCTGTGGTGGATCGAACCTGCTACGAGGAGCCCTCTGTAACAACAAAcccccccGCCCAGGGCCCACCAGCGGGAGCGATCGGTCCGAAGGTCATGTACAGTGTGGCAACAACGGTCGGCACAATAACGGCAGCGACAGCAATAACAACTAACACCCCTAGCGCTAGCTCCTCTACCACAACGTGCTTGGCCGACCAACTGGCAACGGGCGTATCAACAAGTACCACCATTACCACCGCCACGACCACCACCAGCGGCACTAAAACTACCATTTCCTTGACTCCATCATCAAAGTCCAACGTGGTAAAGGTGCTGAGCAACGTGAAGGTGCATACCGATCTGAAGGACTTTCAGGACATCATTATGCATCTGAATGCCGGTCAGATGTCGATTGTCGGCGACAAGACAACACTGATTCCTTCCGTTACGGAGCGACGCCCGTCAGCATTCGCCGCGAGCGCCCCCGGTCGTTCCCTGCTGGCAATAACGCCGGCGATAAATGAGTTCTCTACGGAACAGCACCCACAGCAACCACTGTGCAACATGCAGACGAGTAAGACCGAGATAGATGACTTGACGGGCGATTATGATCACGAGGTAGAGTACAGTGGCAGCTGGCAGGAGATGGACGACAATTACGCTGATCGAGAGGTACGCGTGCAGCGGTGTGGAGAAGAGGAAGAGCATGAAGGAGGAAGCGGTAAGCGTTTACGTAGTGCTAGTGAGCTACGAGAATTTCCACCAGCAGCAGCATCACAAGCCGAGAAGGTGGTTGAAATTGCGTCCAGTGGCGCTACCAATGCACTTTGCTCCGGCAGCAGTAGTGCAATGGTCACGAGCGTTATTCGAAAGACACCGCAACCAGTGCCATGTGCACCGTCACCTGTACAGCAGGATTCGAAATCGAACGTAAAGCGGTTGGTGTTTCGCGTTGCCGGCAACAACGCCCTACCAACAACGGTTACGATTTCGCCCGCCGGACCTTCTACCTCGCCAAAAATTGTACGCGCCTGGCAGGGGATCAAGGTGGAAGATGGTGGATCGGAAGGAACGAGCAGCGCGGCCGTTGTATTAGCGGAACCGGAAAGGGTAGGACACGCCGCAAATGCAACAGCAACTCAACCACCAACTTCTGTCACGAGTCTTGATTATGCTTCTAAACAAAGACAACGTTTCAGGCCGCCTAAAAAGCTAGCCATTAAACCTAAACGTTCGCTGGGGGAAGGGACACCATCATCATCTTCTACCTTCCACACGGTTAAGAATAGCGCAATGATGCATCCAGACGATATCGAGATGACTCAGCCGCCAGCAACGACGGTGGCAATGGCTTCGGCGCTTACCACGCTGGCAGATGTGGTGTGCACGACTGCTGCAGCAGCCCAGCACCCGCAACAACAGCAACCATCACAGCTGCACATCTCCGCGGAACCAATTTCCTCCACGTCGTTCAATGGCATTACTGCCGTGATTCAGAAAACTGACGCAATCGTTTACATGGAACCGTACGTGATGGAACATCTTAAGGCACCGACCAGCAGTAACGCTACGATGGGCGAAGATGGGTTTAACGACGCATATCACCAGCAACAGACGAACCCCGTCATCAAGCAGGAATATTCCCGCTCGATCGTTTCAGCGTCATCAGGTGCGCTTTCGTCTAAGGCACCGGATAAGCCGTACGTGTACGGTGTTCGGCCATCGTACGGTTTCGTTTCAACCAGCTCGGGTACTGCTCTCGTTCCTACTTCAGACGCTACCGCTGGCAGCGGTGGCGGTCGCATTATGCCACACCGCCCATCCACGGAAATCGACGTGGGTGCGTACAACATTTCGTACGTCAGTGAAACGGGTGAAACGATCTACCATCCGCTACCCAAGCGGGATACCAAAACGTTCGGGGCACAGGAGTTGGTAGTGCCTGGTAGCGAGAACGGATTAGTGAGCGGTGGCGAACATGGTAGTGCTGATGGTTCCACTATTGTACCGTCCCATCCGGACAGCCGACGAGAGGAAGAGTTGGGAATCAAACAGATGGAGTTGGCAGAGGACGATGATGATTCTCCCGAACTggaggaggaggaggaggaagatgaggaagatgaagaagacgacgacgatgacgaggacgatgagaaggagctggaggaggaggatctgatcgaggaagaggaaaaggatGAACACGAAGACGATgagctcgagcaggaagaggaggaggagcaagaggagcggcttgacagcgaggaggacgacgagTACGATGACGACGATGTGTACGAGATCGAATCACCCTCTTCCGGGCGCTACGAGCCGAGACGCTCCCATACGTCCCCACAAACGGAACCGCACGTCCGTCGGCGGTTGCTCATGGTGGTCAACAAACCTGCAACTGCCACCACCGCATCGAAAGCGACCGAAACCGGAGGCGAGATAAATTCAAAGACTCGGATGGATCAGTACGAACGATCCTTGCCTGCTGCGGGCAAATCACACAGCAAAGATGGTGAACAACAAGTGGTGGCGGGCGGAGGTAGCATCAGCAGTCTGATGGTCAAGCGACTTCAGCCAGCAATTGCCGGCACACCGGACGACGAGAAGGATTTGCTGGAGGCGGGACCGTCCACACGCATCCACGATCGTAACGCCATTCCACGGCCTAAAATTCGCATCACGAACGCCGAACCGTTCCGGCCGTCAAGCTGCCATGCGGCAATGGAAGGAGTGGAGACAATTACGGAGGCGGTGAGGAAAGTTGAAGTGGATGCAGAACCGTACGAGTGTTTAGATAGCAAGGACTTCTTGGAGCAGAGCTTAAGTAGCAACCCCGCTCTTGGCAGTGGTACCGTTGCAGCGAACGAACAGATTCAAACGACGGTCGAGTCCGCCGTCACGTTGAAAGCGGCCAAAACTGAACCATGCCTCGATGGGCCAGACGACGAGCAGGACACCTCCGCGTCCTCGTTCCTGGACCTGAGCACGGCACGCAAAGGCATACAGGGACCGGTTACGAGTGAcacaagcagtagcagcagcagtagcagcagcaacatcaccaacaccagtgttagtcacagcctcagtcatcaCAGTCATCTGAGTCACCGCAGTCACAGTGCTGTCAGTGGTTGCAAGGAGGGTGGCGAAGGAAGTGGCACGAGCGGCGGCACACGCTCCCTGCTCTCGTCCGGATCGTCGCTCACGTCCACTAGCATGGAGCGGGCAGCGTCCACCGAGAGTCTAAACATCCGCACGGACGAAAAGATGCCGGCGAAGGGAGAAATTTCCGAGCAGGAAAGCAACGGCGATATGGACATGACGTCGTGGAACCATCGGATGTACGCCGTTGTCGAAAATATGCCCATCTACCCGAGCTCGTACGATTTATCAACCGCTCAGGAGTGTTGGAATTTGAGCAGTCGCAATCAGGGCATCTTTGCTGTAACGGACCATTTCTACCATcagcaacagcagcaacaacagcagcagcaTAACAGTGGTAGTAATAATAACTCACACGGAACCGCGGTCAGCGGCCAGTACATGACGTCACGAGTAGCTTTTCAATTTTCCTCAACCGCCCATCAACACCTGCAACAACAGCAACTCGCTTCGGCAGATGCACCATTAGATAGTGGGATGATGCAAGCAAGCAAGCTCGAACCTCAGATGGATGTGGATAGCGACAGCGAAGATGTTATACCGAAGATGCCGTTTGCGGACATGATGGTAGCGCGGATGCACGAACCACCGGGGGCATACGATGAGGTGGGCAGTAGTCAACACCACCAGCAGCAGCTGCAGCAGCAACCACTCCACCAGCCGTGCGAAACCAAGTACGAGGAAACGGTCGGTACTACGTCCTACTTCGGTGTAGCGACCTGTTCCGCCGTGCCGTTGATGCAGCAGCCAGACGAACCCGTACGGCCCAACCGACCGAAACCATCGGGTAGCGGTGTTCCGCGCACTTATCGCTGTACACTCTGCACCAAAGCGTTTAGCACAATTAAGCAACGTCGGCTACACCAGCAATGCGAACACGTGGATGATTTGTTGGCTCTGTCCTCGACGGCACAGCACCAGGAAATACGCGGAGAGGACGGGAATAAGATATTGACTGATGAAACgcaacagcagcaacagcaaccacaactaccacaacaacagcagcagcagATGTACAAAAAAGCACCGATTCCAGTTGTAATGAACTATCACTGGATGAAGCAAGAGATTGAGCGCAAAAGTGAAGCTGCACTGCGGAGTAACCGCATGCTGATGGCTGGCAGTAGCAGCAGTAGCACTAACGCAGTCGTACCCGGTACGAGTGGTGGCGAGGCTTATcaggaacagcagcagcaacagcaacagcTTGTGTTGGAACAgcacgtgcaggtgcaggtacaggtgcaggtCGATGGAACCGTTGCGGCGAGTGCCGGTGCACTGATGGGCACGGCGGACACGATGCTGCCAGTGGCCTGTGCTGTAGCAGCACGCAATCGTTCGTATGTGTGCAGCACCTGCAACCAGGAGTTCGATCGATTCAATCTGTTCAACGAGCATCTGCTGGAGCATCCGGTTGAGTGTTCTGCGTGCGGGCGGCACTTTAAGCAGTGGCGTAACTTTTCGCTCCACATCAAGCGCCACCTCGGCATCAAGGAGCATCAGTGCCGGATGTGTGGCAAGCGGTTCGTGATCAAGCAAAAGCTGATCGAGCATATGCGGGTGCACACGGGCCATGCCCCGATCAAGTGCAAGCTGTGCAACCGGACGTTTAAGCGGTTCTCGAACCTGGCCCAGCACCGGAAACGCTACCATCTGAATCGCACGGTCGTAAAGGAGGAGTACGTGTGCCAGCTGTGCGGCGAAGTTTTTCACACGATGGCAAAGATGGAATGGCACAAGGAGACGCATGAGAAGAAGCCGAAATCGTGCCCGTACTGTCGGGAAAAGTTCATCCACCGGAACAGCTTGACGCGCCACATCCGGCTGTCCCACACCGACAAGTACGCGAAGCTTGAAAATAAAACCGAGCCATGCAGCATCTGTCAGCAGCCGTACACGAAGACGAGCATGCGCCGGCATATGGAAACGCACACGAAGGAGCGGATGGCGTACTCTTGCGGTATCTGCAACAAGCGATTCACCACCAACTGGAACCTGAAGCAGCACAAGTGGACGCACACAAAcccgacgatgaaaccgttccagtgcacctactgtcca
- Protein Sequence
- PSQFTVVKTIDVHGVPSFQLNNVTLVKRELVQPAANSAAVPPPPPPPPPPPPPPPSSSSSAAIGTVQNELSTIGPLGDDYSEPSGSGTASGSSSRVVYPRYTNELYSGPPPPYSRAISSTVASSTHITPVQQTLQLNLTKNNVGGLGVVGQQIQLLAKNLSETSTSAFKQYPSVQAVSVVDRTCYEEPSVTTNPPAQGPPAGAIGPKVMYSVATTVGTITAATAITTNTPSASSSTTTCLADQLATGVSTSTTITTATTTTSGTKTTISLTPSSKSNVVKVLSNVKVHTDLKDFQDIIMHLNAGQMSIVGDKTTLIPSVTERRPSAFAASAPGRSLLAITPAINEFSTEQHPQQPLCNMQTSKTEIDDLTGDYDHEVEYSGSWQEMDDNYADREVRVQRCGEEEEHEGGSGKRLRSASELREFPPAAASQAEKVVEIASSGATNALCSGSSSAMVTSVIRKTPQPVPCAPSPVQQDSKSNVKRLVFRVAGNNALPTTVTISPAGPSTSPKIVRAWQGIKVEDGGSEGTSSAAVVLAEPERVGHAANATATQPPTSVTSLDYASKQRQRFRPPKKLAIKPKRSLGEGTPSSSSTFHTVKNSAMMHPDDIEMTQPPATTVAMASALTTLADVVCTTAAAAQHPQQQQPSQLHISAEPISSTSFNGITAVIQKTDAIVYMEPYVMEHLKAPTSSNATMGEDGFNDAYHQQQTNPVIKQEYSRSIVSASSGALSSKAPDKPYVYGVRPSYGFVSTSSGTALVPTSDATAGSGGGRIMPHRPSTEIDVGAYNISYVSETGETIYHPLPKRDTKTFGAQELVVPGSENGLVSGGEHGSADGSTIVPSHPDSRREEELGIKQMELAEDDDDSPELEEEEEEDEEDEEDDDDDEDDEKELEEEDLIEEEEKDEHEDDELEQEEEEEQEERLDSEEDDEYDDDDVYEIESPSSGRYEPRRSHTSPQTEPHVRRRLLMVVNKPATATTASKATETGGEINSKTRMDQYERSLPAAGKSHSKDGEQQVVAGGGSISSLMVKRLQPAIAGTPDDEKDLLEAGPSTRIHDRNAIPRPKIRITNAEPFRPSSCHAAMEGVETITEAVRKVEVDAEPYECLDSKDFLEQSLSSNPALGSGTVAANEQIQTTVESAVTLKAAKTEPCLDGPDDEQDTSASSFLDLSTARKGIQGPVTSDTSSSSSSSSSNITNTSVSHSLSHHSHLSHRSHSAVSGCKEGGEGSGTSGGTRSLLSSGSSLTSTSMERAASTESLNIRTDEKMPAKGEISEQESNGDMDMTSWNHRMYAVVENMPIYPSSYDLSTAQECWNLSSRNQGIFAVTDHFYHQQQQQQQQQHNSGSNNNSHGTAVSGQYMTSRVAFQFSSTAHQHLQQQQLASADAPLDSGMMQASKLEPQMDVDSDSEDVIPKMPFADMMVARMHEPPGAYDEVGSSQHHQQQLQQQPLHQPCETKYEETVGTTSYFGVATCSAVPLMQQPDEPVRPNRPKPSGSGVPRTYRCTLCTKAFSTIKQRRLHQQCEHVDDLLALSSTAQHQEIRGEDGNKILTDETQQQQQQPQLPQQQQQQMYKKAPIPVVMNYHWMKQEIERKSEAALRSNRMLMAGSSSSSTNAVVPGTSGGEAYQEQQQQQQQLVLEQHVQVQVQVQVDGTVAASAGALMGTADTMLPVACAVAARNRSYVCSTCNQEFDRFNLFNEHLLEHPVECSACGRHFKQWRNFSLHIKRHLGIKEHQCRMCGKRFVIKQKLIEHMRVHTGHAPIKCKLCNRTFKRFSNLAQHRKRYHLNRTVVKEEYVCQLCGEVFHTMAKMEWHKETHEKKPKSCPYCREKFIHRNSLTRHIRLSHTDKYAKLENKTEPCSICQQPYTKTSMRRHMETHTKERMAYSCGICNKRFTTNWNLKQHKWTHTNPTMKPFQCTYCP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -