Achr008208.1
Basic Information
- Insect
- Anopheles christyi
- Gene Symbol
- -
- Assembly
- GCA_000349165.1
- Location
- KB700113:10-6009[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.005 0.3 10.9 3.7 1 23 355 377 355 377 0.95 2 15 5.5 3.4e+02 1.3 0.1 3 8 381 386 380 403 0.87 3 15 6e-05 0.0037 17.0 2.4 1 23 408 430 408 430 0.95 4 15 8.1e-06 0.0005 19.7 1.3 1 23 448 472 448 472 0.92 5 15 0.0047 0.29 11.0 1.4 2 23 478 500 477 501 0.94 6 15 0.0015 0.093 12.5 0.2 1 23 526 549 526 549 0.96 7 15 0.0084 0.52 10.2 3.2 1 20 556 575 556 578 0.94 8 15 1.2e-05 0.00076 19.1 4.1 1 23 584 609 584 610 0.97 9 15 0.24 15 5.6 0.9 1 23 889 912 889 912 0.94 10 15 0.021 1.3 8.9 0.9 2 22 930 950 929 953 0.89 11 15 0.19 12 5.9 0.7 2 23 959 981 958 981 0.95 12 15 0.0023 0.14 12.0 0.4 1 23 987 1009 987 1009 0.97 13 15 0.082 5 7.1 0.2 3 23 1019 1040 1017 1040 0.95 14 15 0.0074 0.45 10.4 3.7 1 20 1046 1065 1046 1068 0.95 15 15 0.0011 0.066 13.0 0.1 1 23 1074 1099 1074 1099 0.97
Sequence Information
- Coding Sequence
- ATGCAGCACCGGACACGGGCACATGTATTCCAGATACAGGTCAAAGCGCTGATCAAAACGCTGAAATGTCTACAGTCGGACGATAAATACCAGGCGCTGCTGTTTCTTATCTCGGCCATCAAGCTGTACGTCAAGTTCCTGTACAACGATTGCCAGGAGCGTCTCTACAAACCAGCAATACTCAAAGAGTTGAACAATATCGAAAATGTGATTGTGGTGAACCTGCTGAAGACGCGTAGCGCGCCAGCGTCAGGCTCGTCCCTGTCGGTAGCGACGGGTCATACGACCGTGTCCTCGTGCAGTGGTGACATCGCAGGCAAAGCCTGTCTCGACCTCGATACTAGCACCAGCGTCCGATGCACAGACCTATCGCTCGGTAGCGATGGTTTGTTATTGATGCACCCGCACCGCACCCGCCAATCTCCACTAACCCCATGGGATCTTCGGGGGAAGCTACTGGGTGGCAACCTTTTCGACGGTCTACCATTGACCGGGAGTGCAAGGCTAGGCCCTGATTACAGCAGCAGAGGTAAAACGTTGCTAAAGACTGGACAGCGTGTGATGGGGGGAAATCGGTGGTTGGGAAACGTGCGAATGAATCGTGCGCTGGTTCGTATGATCGCAAATCACGATTTTAAATTGCTTTTCAACATGTTCGAACAAAGCATCTTTCCCGCGTGGAAAATTTACAAAAATGAACGAATATTTGTACGGAAACGGCCCGCCCTGACCACGGTCACGGTTCGCACGTCCCTTCCCGCCATTTGCTACGGGAGCGGTTCGTCTCACTCGCCACCCGCGACGTACATCAAGAAGGAGGAGTTTGACTTCGATCCGCCGTACTCGATGGCAGATGACCACTGCTTCGAGGAAATCAAGGATGAGGACGACGAGGATCTATTGCTGATGAAGGAAGACGATTCGATTGACAATTCGAACGAAATCTTCTCGGAGGAGGAATCGTCAACGAACAACACCTCGCTGATGTTGTCGTCCGACACCAACACGCTGGATACGAACGATTCCAGTATGGTATCGCACGAGCGCAACAAGGAACAGGTGTACCAGTGCTTACTTTGTGATAAAAGCTATAGGAAACGCAAATCTCTTGTCATCCACTTCAGCCACCATCCGGGATTTTGTCCCGATTGTGGCAAACAGCGAGGAGTAACCTCAGAGGAAATCGTTGAACACAACCGAATCTATCACAAAAACCGGCCTCACATTTGCGAGCACTGCGGGGAAACCTTCACGCGAAACCAGCAGTATCAGATACACGTCCAGGGTCATTTTATAAGCAAAGATAGAGTAGCGGAGCAAAATTGTAAAAAAACACACAAATACAGCTGTAAAACATGCGGTATCGTTTTTAACAATCAGAAATATCTCGAAAAGCACATCCAGAAAACCAACCACCAGGCGGAAGGTTTGGTGTGCGACATTTGCGGTGCAATATTTTGTAACAGTATCAAGCTCAGCCAGCATGTAAGCCGCACCCATCACAATGTGTTTACTCAAAAAGCTACCTTAGAAAGAAGTTTGCTCCTGCAAGGAACAAGTGTTACAGACAAAGCCTTCACCTGCGAACAATGCGGCGCCTCCTTTCTATCACAACCTTCACTAAGGGAACACATAAAACTATCACATTCCGTTCCGGAAAACAAATTCGAGTGCAATATCTGCAACAAACTGTTCGCCGCCAAACGGTCACTCAAACGCCATAAACTTTGCCATTCGGATGAGCGCGCCTTCCGTTGTACGGTAGAAAATTGCAAAGAATCGTACAAAAATCAATCGCACCTTGCCCGCCACATGAAGACCGCCCATCACATTGATCCACCTTCGAAGCGGTTGCAGAAAGCGAAAGCTGCAGCAGCGGCTGCCGCGGCAGCAGTAGGGACGAGCACCGTCACCGCATCGTCCGTCGATCCAAGCTCGGCCAGCACAGACTTTATGACACATGGTGACGCTGCGACGATGGGTGGTGGCTCATGCGATTCGCTGAAGGGCATGGGCAGCACGTTGAAGAAATCTCTCGGAAGCAGCGAAAAATCACTCGGTGACAGTAGCACCAACTTTAGCGACAATTTGTCGTCGTTTAATTACGAGTTTTCCGACACGACCGCTGGAACGTCTACTCCGGCTCTGGCAACAGCGATGGGTACTGCGGATGTTGGTGCGGGTGTACTCACTGGTAGCAGCAGCGCACTAACGAACAGTCGCACGTCCGCCTTAACCTGCTCCGTTACAGGCATGCAAACTGGTGGTGCGTTCAACGACCCGGCCATCAGTTTCGGAACGAACAAACCGCAGCAATCTCAGATGTTGCAGCAACAACAACAGCAACAGCCACCACAACAACACCTCGGTGGGTGGCAGAATCTAGAGTTTGGTGCAGGGACAGCGACGGCTCACAGATCGGCATCTCTTCCGGGTAGAGTGGTCGGTGGTATGCAACCGTTACAGGATCCACTGGCGGCAACGACTGGTAGCTTTATGGATGGGGCACATCATCACCTTCACAACCACCAGAACATGCAGCACGCCGCTCATCAACATGGGGCTGGGCCAATGATGAATCCGATGGCAAATACAACAGGCAACTTTTTAGGCTCTGGCAGCTTACCCGTCGGCACGAGGAGATTCCCTCTGCCAGAGGGTAACTTTATGTGTGAGCACTGCGATGAAACCAACTTTATAAATGCACAACAGTACCAGCTTCACGTGCAGGACCACTTTGCTGCCAAGGATGGTAAAGATCACCCCAGCAAAAAGCTGCTACGGTTAAATTGCAAGACATGCAATCTGGTGTTTGCTACTGGAGCACAGCTCGATCGGCATATTCACAAGACAAATCATCACACCGAAAGCATAGTCTGTGAAATATGTAGTGCAATATTCAACTCCAACTTAAAAGTTTATCAGCATATGCTGAAGTGTCACAAGAATGACGTGTGGTTTGCTTGTGAACAGTGCTCTAAGGTTTTCATATTGAAACAGGACTACGACAAGCATCAGCTGGTGCACCAGACGGTGACGGATCGGTCAGTCATCTGCGAGCACTGCGCATCGTCCTTCCTCACGCAGGAAGCCCTAAAGGAACATATCAAAATAGCCCATTCGATGGACAAAAAATACAAATGTAACATTTGCAATAAGCTCTTTGCTGCCCGTCGGTCGCTAAAACGCCATAAACTGTGCCACGAAGAGGAGGCCGCTTTCCGATGTCCGATCGATGGTTGCAAGGACGCTTTCCGAACGGCGGCAAATCTGGCGAAGCACAAAAAGATGGCACACCCAGGTGGACTGTCGACGGTTTCTGTACCTGTAGGTAATGTGATGGCACACGATCCTATCCCTGATAAGGCCGGTACCGGAATTGGAATGCCGGGCGCAGTGAAAATGCTACCGGGCACAATGGCGGCAGGAACGTCCAATGCTCCAGGTGCTGGTGTTACGCTGAAAGGCATGGAAAAGACAATGCACCATCAGGAAGCACAACCCGGCGTTACGATGCCAGCCGGAGGGCAGCCCAATGTGATGAATCAGATTGGACCGAATTCGATGTTGGGAATGAATACAGGAGCAGGGTTGAAAACGGACGGTCGATCATCCGCTGGCGGTATGATGGTGGTGCCTCCGTCGAGAACGAGCAGCGCTGGAAGCAGCACAGGAATGGGTAGTATTAACAATGGAAGCAGTGGTGCTAATATACCTTACAATCCTTATGACACTAGCGGAATGAACTACAATAGTGTGTTAGGGCCACCTGGTGCAAGTGTCGCTTCCAGTGGCCCACATCATCCTcatcaccaccagcatcaccatcatcttcaacaacagcagcaacaacagcaccaacaacaacaacaacaacaacagcagcatcaaacgcaacaacaacaagctcagcttgtgcaacatcatccacaaGCACATGCTCATCATCATGCTCCTCAATCTCAGTTTATCGGTATGGGTAACCCGAGCACTTCCGCCGGGCTTCACTATACTGCCCGCTCTGGTGTCAGTACCGCGGCATCAGGCAATCCGGAACAACAGTCCGTACCTATGGCGTATCGCATGGGAGATTCAGCTGTGCCAGGCAACAGCGGAACGGCAACAAATGCATCCAACATTCCCTATGGCTATGGTCAGATGAATAACGCGTTTGATTGGCAAGGTATGGAAATAGGAGCATCGACGAGTGCTGAACCAGGCCTAATAAGTGGGTCTGCTGGTCAACCGCAAGCGGCATCCGCCAGCGGAGGGGCGTTGAAAACTGCAAACACCAACAAATACTATAACGCAATGCATGAACCTAAACAACACACCCATCACCAGCAGCAGCAGCAACAGCACATGATGAATATGAATAGCCAAGAGATGATGGGATACCAGGACATGTGGAACGCCAACATGATGAAGATGGAATTCCAAGATGAAGGGAGCAGTGCAAATACGGGCAATACTGGTGCTTACAATAATCTCGGGAACATCCTAAACAATTTAGAAATGATGGGCGgcagcaacagcagtttcgagcagcagcaaacccagcaacagcagtcacagcagccacagcaacagcaCGGCTATGATATGGTATCAACACAACGAACAAGTTCCACAGATACTCATCCGCAATCGAGAGGCCAGTCAGCTCAATCACCT
- Protein Sequence
- MQHRTRAHVFQIQVKALIKTLKCLQSDDKYQALLFLISAIKLYVKFLYNDCQERLYKPAILKELNNIENVIVVNLLKTRSAPASGSSLSVATGHTTVSSCSGDIAGKACLDLDTSTSVRCTDLSLGSDGLLLMHPHRTRQSPLTPWDLRGKLLGGNLFDGLPLTGSARLGPDYSSRGKTLLKTGQRVMGGNRWLGNVRMNRALVRMIANHDFKLLFNMFEQSIFPAWKIYKNERIFVRKRPALTTVTVRTSLPAICYGSGSSHSPPATYIKKEEFDFDPPYSMADDHCFEEIKDEDDEDLLLMKEDDSIDNSNEIFSEEESSTNNTSLMLSSDTNTLDTNDSSMVSHERNKEQVYQCLLCDKSYRKRKSLVIHFSHHPGFCPDCGKQRGVTSEEIVEHNRIYHKNRPHICEHCGETFTRNQQYQIHVQGHFISKDRVAEQNCKKTHKYSCKTCGIVFNNQKYLEKHIQKTNHQAEGLVCDICGAIFCNSIKLSQHVSRTHHNVFTQKATLERSLLLQGTSVTDKAFTCEQCGASFLSQPSLREHIKLSHSVPENKFECNICNKLFAAKRSLKRHKLCHSDERAFRCTVENCKESYKNQSHLARHMKTAHHIDPPSKRLQKAKAAAAAAAAAVGTSTVTASSVDPSSASTDFMTHGDAATMGGGSCDSLKGMGSTLKKSLGSSEKSLGDSSTNFSDNLSSFNYEFSDTTAGTSTPALATAMGTADVGAGVLTGSSSALTNSRTSALTCSVTGMQTGGAFNDPAISFGTNKPQQSQMLQQQQQQQPPQQHLGGWQNLEFGAGTATAHRSASLPGRVVGGMQPLQDPLAATTGSFMDGAHHHLHNHQNMQHAAHQHGAGPMMNPMANTTGNFLGSGSLPVGTRRFPLPEGNFMCEHCDETNFINAQQYQLHVQDHFAAKDGKDHPSKKLLRLNCKTCNLVFATGAQLDRHIHKTNHHTESIVCEICSAIFNSNLKVYQHMLKCHKNDVWFACEQCSKVFILKQDYDKHQLVHQTVTDRSVICEHCASSFLTQEALKEHIKIAHSMDKKYKCNICNKLFAARRSLKRHKLCHEEEAAFRCPIDGCKDAFRTAANLAKHKKMAHPGGLSTVSVPVGNVMAHDPIPDKAGTGIGMPGAVKMLPGTMAAGTSNAPGAGVTLKGMEKTMHHQEAQPGVTMPAGGQPNVMNQIGPNSMLGMNTGAGLKTDGRSSAGGMMVVPPSRTSSAGSSTGMGSINNGSSGANIPYNPYDTSGMNYNSVLGPPGASVASSGPHHPHHHQHHHHLQQQQQQQHQQQQQQQQQHQTQQQQAQLVQHHPQAHAHHHAPQSQFIGMGNPSTSAGLHYTARSGVSTAASGNPEQQSVPMAYRMGDSAVPGNSGTATNASNIPYGYGQMNNAFDWQGMEIGASTSAEPGLISGSAGQPQAASASGGALKTANTNKYYNAMHEPKQHTHHQQQQQQHMMNMNSQEMMGYQDMWNANMMKMEFQDEGSSANTGNTGAYNNLGNILNNLEMMGGSNSSFEQQQTQQQQSQQPQQQHGYDMVSTQRTSSTDTHPQSRGQSAQSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -