Achr003533.1
Basic Information
- Insect
- Anopheles christyi
- Gene Symbol
- -
- Assembly
- GCA_000349165.1
- Location
- KB690891:7694-10673[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8e-05 0.0029 17.3 0.2 1 22 240 261 240 263 0.90 2 13 0.011 0.67 9.9 0.7 3 23 271 292 270 292 0.93 3 13 3.4e-06 0.00021 20.9 1.2 1 23 298 321 298 321 0.95 4 13 1.7e-06 0.0001 21.9 0.2 1 23 327 349 327 349 0.97 5 13 0.00053 0.032 14.0 0.5 1 23 355 377 355 377 0.98 6 13 0.95 58 3.8 2.0 1 10 382 391 382 393 0.93 7 13 1.7 1e+02 3.0 0.4 3 23 556 573 555 573 0.78 8 13 0.0011 0.066 13.0 2.8 1 23 579 602 579 602 0.96 9 13 0.002 0.12 12.2 0.3 2 23 609 631 608 631 0.93 10 13 1.1e-05 0.00067 19.3 3.9 1 23 637 660 637 660 0.94 11 13 0.0009 0.055 13.3 0.3 3 23 668 688 666 688 0.97 12 13 0.0074 0.45 10.4 1.7 1 23 694 716 694 716 0.97 13 13 4.5e-05 0.0028 17.4 0.9 1 23 721 744 721 744 0.97
Sequence Information
- Coding Sequence
- ATGGACGAATTTCGCGAATTTTCGACCGCTTGCCGGTTTTGTTTGTGCGAAGATCACGAAAAATTACTTACCGTTAGCGAAATCCTGAGTTGTTCACTTACAATAGATCTCATTGAACTGTTTACTGGCGTTGTGCTTAGCTCATCGGACCCCACATCGCTTGCAGTATGTGGGCACTGTAGGGATATCCTGTATCAAACGGCTCAATTTCGTAACACCTGCTTAAACAATGATATCCTGTTTAGAGAATCGTTCAAGCAATGTCCCACTCCTTCGGGAATCAGTGATAATGAAAATGAAGCACGATCGAAGCGAGATGATACAAGTTCTCTTGTAATTGCAAGTATAGACCAAAAGGAAGAAATTCTAAAACACAGTAATTGTAATCAAGAACCACCCCAACTGTCTTTCATTTATACGGAACTATGGGAGGAACAGTTGGATGAAGCAGAAATTATCAACGAGCAAGAACAGGAGACACTACCAAAAACGCAACGTGATATGCAGTTAGAAAGTCTTAATGTGTGTACGAAAATCAGTAGTTCAGAGTTGATTGTGCCTGGCCAAATAGATGGCGATGGAAATAGCCTTAAAGGAGTGCCAACAAAAACGGACAAATTAGCATCCAAATGCAAAAGGCAGCTGTGCGTGACATGTGGCAAACTAGTCAGCAATTTGCATTATCACAGTTGTACTCATAAGAACGACCCAACCCTGTACGCTTGCCCACATTGTCCAAGGAAAATGAAAAACCAATCGAATCTCGCACGACACATAGGAGCGGTCCACTTGAAGAAAATTGTTAAATCTTGTGACCCATGCGGAAGGGGATTTGGTCACATCAACTCATACAATGCGCACATGCGATCACGCCACGGTATGGGCGAACCATATAAGTGTGAAATATGCTTGAAAACGTTCAAACAGCCTAGTGGCTATAAAAAACACATATCTCTAACCCACAGCAAGGAAAGGAACTTTCCTTGCGGGATCTGTGGCAAACCGTTCAAGGATAAACAGGCATTAAAGTTACACAAAAATGTACATTCTAACGATCGACCGTACAAATGCGGGATGTGCCCGAAACAATTCAAAGGCGCAAGTGCCAAAAGGACGCACGAGTTGACCCACGTCGGTGTCGTGTTCCAATGCACTTTCTGTGATAAATCATATCACGAAATCGACGTAATTCCTGCATCAGACATGGATTCATCTCTTACCTCGGAGCTCATCGAACAGTTCACCGGGATTCAGATTGATTATAGTGGAAAACTGTCGTACTCAATTTGTTTGTGCTGTAAAGATAAACTACTGCGTTCGGTTGAGTATCGTAAAACCTGCCTTAACAACGATATACTGTTTAAGCAGCTGTTTTTCATAAAAACTGATTTTAAGGACGATCATACTGAAGAATCCAAAAGATGTACTGAAACGATTGAATGGGATTCAGCACAGATTGAATTTATTCTTCCAACCTCTGAAACCATACGTCAAGCCATAGAAAATGATGACGAATCTTGCGTACAGTCCTGCTCTGAAATTGAACCAGAACCGGAGGAGAGTTCAAGTCCACTAACTGTTAAGGTTAACGAACTTGAGCTTCCCTGCAAGCCAGCAAATGCTCTACTAAAACCAGATCGGAAACAAGCCAAGAAAAAACAGTTGTGTGTGTTGTGCGGTAAAACAGTTAACTACCTAGCGCGACATCTTAACAGTCACAACAAGAACAGTACCTACAGTTGTCCACATTGCTTCCAACAGCACAACGATCAATCCAACCTGATGCGTCATATACGAGCAGTGCACCAGAAAAAAGAAATCATGGTCTGCAAACCTTGTGACAGAGGATTCACTAGCAAAAATTCATACGATGCCCATATGCGTGCCCAGCATGGCGTGGGGGAATTGTTCAAGTGTAACATATGTTCCAAAACGTTCAAACATCCGAGCGGCTACAAAAAACATGTGTCTCAATCGCACACCGATGAACGGAAATATGGCTGTACAGTTTGTGGGAAGCTGTTTAAGGACAGACAAGTACTTCAGCAGCATGGTAAGGTACACTCGACTAGTCGTCCTTACGAATGCCGGATGTGTTCGAAACAATTTAAAAGTCAATTTGCACGAGTTACCCATGAGCTAACACACAGTGGGACTGTTTTCCCATGTTCGGCATGCGATAAATCTTATCGCTACAAATCACTTCTCAGCCAGCACGTaaaaaaaGTGCATCCAGAGGAATGTTAG
- Protein Sequence
- MDEFREFSTACRFCLCEDHEKLLTVSEILSCSLTIDLIELFTGVVLSSSDPTSLAVCGHCRDILYQTAQFRNTCLNNDILFRESFKQCPTPSGISDNENEARSKRDDTSSLVIASIDQKEEILKHSNCNQEPPQLSFIYTELWEEQLDEAEIINEQEQETLPKTQRDMQLESLNVCTKISSSELIVPGQIDGDGNSLKGVPTKTDKLASKCKRQLCVTCGKLVSNLHYHSCTHKNDPTLYACPHCPRKMKNQSNLARHIGAVHLKKIVKSCDPCGRGFGHINSYNAHMRSRHGMGEPYKCEICLKTFKQPSGYKKHISLTHSKERNFPCGICGKPFKDKQALKLHKNVHSNDRPYKCGMCPKQFKGASAKRTHELTHVGVVFQCTFCDKSYHEIDVIPASDMDSSLTSELIEQFTGIQIDYSGKLSYSICLCCKDKLLRSVEYRKTCLNNDILFKQLFFIKTDFKDDHTEESKRCTETIEWDSAQIEFILPTSETIRQAIENDDESCVQSCSEIEPEPEESSSPLTVKVNELELPCKPANALLKPDRKQAKKKQLCVLCGKTVNYLARHLNSHNKNSTYSCPHCFQQHNDQSNLMRHIRAVHQKKEIMVCKPCDRGFTSKNSYDAHMRAQHGVGELFKCNICSKTFKHPSGYKKHVSQSHTDERKYGCTVCGKLFKDRQVLQQHGKVHSTSRPYECRMCSKQFKSQFARVTHELTHSGTVFPCSACDKSYRYKSLLSQHVKKVHPEEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -