Achr003339.1
Basic Information
- Insect
- Anopheles christyi
- Gene Symbol
- -
- Assembly
- GCA_000349165.1
- Location
- KB689702:3122-10919[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 1.8 1.1e+02 2.9 0.7 3 23 264 281 262 281 0.76 2 30 0.0025 0.15 11.9 0.2 1 23 288 311 288 311 0.95 3 30 0.00017 0.01 15.5 0.6 2 23 318 340 317 340 0.96 4 30 0.00018 0.011 15.4 2.5 1 23 346 369 346 369 0.97 5 30 0.007 0.43 10.5 2.6 2 23 376 397 375 397 0.96 6 30 0.0026 0.16 11.8 1.1 1 23 403 425 403 425 0.95 7 30 8.9e-06 0.00055 19.6 1.4 1 23 430 452 430 452 0.98 8 30 1.7 1e+02 3.0 0.1 3 23 716 733 715 733 0.79 9 30 0.011 0.69 9.8 0.6 1 23 739 762 739 762 0.91 10 30 0.00022 0.014 15.2 0.9 2 23 769 791 768 791 0.96 11 30 0.022 1.3 8.9 1.6 3 23 799 820 797 820 0.95 12 30 0.00012 0.0074 16.0 0.4 2 23 826 847 826 847 0.98 13 30 0.0062 0.38 10.6 3.4 1 23 853 875 853 875 0.96 14 30 1.5 92 3.1 0.8 3 23 1100 1117 1098 1117 0.78 15 30 3.7e-05 0.0023 17.6 3.3 1 23 1123 1146 1123 1146 0.92 16 30 0.00044 0.027 14.3 2.4 2 23 1153 1175 1152 1175 0.95 17 30 0.0017 0.1 12.4 1.6 1 23 1181 1204 1181 1204 0.95 18 30 0.00038 0.023 14.4 4.5 2 23 1211 1232 1210 1232 0.96 19 30 0.082 5 7.1 1.1 1 23 1238 1260 1238 1260 0.92 20 30 5.6e-05 0.0034 17.1 1.8 1 23 1265 1288 1265 1288 0.97 21 30 0.11 6.8 6.7 1.4 3 23 1494 1511 1492 1511 0.79 22 30 0.00075 0.046 13.5 0.2 1 23 1517 1540 1517 1540 0.97 23 30 0.00098 0.06 13.1 0.4 2 23 1547 1569 1546 1569 0.95 24 30 0.004 0.25 11.2 5.8 1 23 1574 1597 1574 1597 0.97 25 30 0.0022 0.14 12.0 0.2 1 23 1633 1656 1633 1656 0.97 26 30 0.013 0.83 9.6 1.2 2 23 1663 1685 1662 1685 0.96 27 30 0.0014 0.086 12.7 5.0 1 23 1691 1714 1691 1714 0.93 28 30 0.00024 0.015 15.1 0.1 1 23 1720 1742 1720 1742 0.98 29 30 0.00072 0.044 13.6 3.5 1 23 1748 1770 1748 1770 0.98 30 30 5.5e-05 0.0033 17.1 0.8 1 23 1775 1798 1775 1798 0.96
Sequence Information
- Coding Sequence
- ATGTTGAACGATGCACCGGTCTGCAGGTTTGTGGCTGATGTGTACCGTCTTGGGCATCTTACGGGTATCAAACTTACGAACTTCCTTTTCGACGAGTCAAACATTTGCTACGCGGTTTGCATCGAGTGCCATAACAAGCTACAAAAGTTTGCTGCATATCGGATTTGCTGCCTAAACAATGATGTGCGCTTTCGAAGTAGGTTCCCAATGATATTTAAGAAAGAGGTTGCAGACGATGAGTCGGACGCGCAGGAGGACATTAACACGGTTACAGGCACACAATACATCGAAGTCGTTGATCATAGTTACTGTGGCGAGGTATATGATTTTTCACCGGAAGAGAAAAGTGCAGCACCAGTTGACATGCAGGAAGAGATCGATCCAGAATATGAAGAGCTTGTAGAGCTGTATGAAACGGGCGACATAAATGATGATGTGGATGAAATTGAGGAAGAGATTGTGCTTCAAAACAGTGAAAATATTGACCCAGTCTCGCAAGAATGCAGTGGGGAAACTCTATTTCAAGAATTGCTTCCTGGACAGGATACGCAGTTCCAGGAACTGGATTTTCAGGAAACCAAGTTCAGTGTCTACGAACATGATGGGTGTTTACAGGAGACAGAAGATAGCGAGGACATTCAAGATCAGCTTCCTGCAAGTGAACCGACAGCTCAGCAAAGTCTTGGGGAAGAGAGTGAGTTCGAATGGAAGGAAGAACTGAAGAGTACAAAGAGAAGTGGTAAAGAAGGTGCCAAAGGTGCCAGAGACAAAGCTCCCAAAAAGAAGCTTTGTACACTGTGCGGGAAGCTGGTTAGCTACCTACGCGATCACATGCTAACACACACGAAGGAACAACAACAGTTCGCGTGCGACCGATGTCCGTTTGTATCGAGCCGCAAGGCGAATTTGAAAATGCATGTGCAAAATGTGCACCTGAAACGGGTCGTGAAGAGGTGCGAAAAATGTGATCGAGGGTTTAGTTACGTTGACTCGTACAATGCTCACATGCGTGCCAAACACAACTTTGGCGAGTACTTTGAATGTAAAATATGTTCGATGAAATTTCGTCATCGGGGTGGTTTGAATGGTCACATGAATCGAAAGCACAATGAGGAGAGCAACTGTTCCTGTCCAGTTTGTGGTTTTGTGTGCCAAGACAAAAAAGGATTAAAGGATCATAGCAGAGTACATTCAAATGAAAAACCGTTTGCGTGCAGACACTGTCCGAAGGGTTTCAAAAGTCCGTACGCACGCAGAACGCACGAGCTTATCCACAAGGGTGTCGTTTTCACGTGTACCGTGTGTGAAAAATCCTATCGATACAAATCTCAGCTAGTAATTCACGCGAGGAAACATAACAATCAGCATGGAACGGAAATGGAAGAGAATGAGCTTAGTAGTGTTTGCCGGCTTTGTATGTGTGAAGGGGAAAGTGTGCTAGTTCCGTTTTGTAAAATACTGGAACGTACGTTAACGGTGGAAGATATTGAACGATGCACTGGAGTACGGATAGTAGCAGAAAAAAGTATACCGTATTCTATGTGTGAAGACTGTTACAATAAACTGAAAATCTTTGCCACGTTTCGCACCTTCTGCCTATCCAATGATGCCCGATTTCAGGAACTGTTTGGAGCAATATTGGGCAATTTGAACAACGATGAGGAATACACACAAGAAACGAACAATTATGACAATACGCTGCCGGGAATTGCAGACCACATCGGCTATATTGCAACAAATGAGGGTTCAACGTCTGAGAGCAAGATAGCAAAGGTGGAATATCTGAATCCAGACGTCGACGACGACAAATTGGCTCACAGTAGCTGGAAATGGGAAGAAATTGAAGATAATTTAGAAATTGATGGGGAAAACGAAAAAACGATCCTAGAGGAACACAACAACCGCACCATACCAAAACATGGTGAAAATCTTCGCCAAGATAAAGAGGTTTGTGTAAAAGAAAATGAAAATCCGGAAGAAATGTCTTGTTCGGAAACGATGCAAGCAGATTTGGTTACGAATCGTGAGTGCAACTTGGAATACATCGGCAGCACTTCTGATGGAGAGAGTAACGACATAGAGAAGACTCCGAACGCGCAACATCCAAGTGATGCTTCCTATGATAAGAATTCGCGAAAACAACTGTGCCCTATGTGCGGTAAGATGGTGTACGACTTAGCGGACCATATAATATCGCACACGAAAGAGCGAAAGCATGTGTGTTCCTATTGTTCAATGGCATATGGTCGGAAAACGTATCTGAAAATGCACGTGGAAGCGGTTCACTTGAAGAAGGTAGTTAAACGATGTGAGCAATGCAATCGTGACTTCACGCAAAGAACTGGTTACGAAGCGCATATGAGAGCTCAACATAACATCGGCAAATGGTATGGATGTAAACAGTGTAATGTGCAGTTCCGTCACCCgggggggTTGCGGGAGCATAATAATCGCAAGCATAACGACAAAAGCGAGCAGTGTCCAGTTTGCGGTATGGAGTTTCAGACAAAAACTGGACTAAAAAATCACAGCCGGGTGCATTCTTCGGTGAAGGTGTTTGCATGCAAATACTGTCCGAAACGATTCAAGAGTCCCAACTCGCACAAGCAACATGAGCTCACTCATCTGGGTGTTACCTTTCCGCTCTGTTTATCGGAAAATGAGTCAATTCTACTAGCGACATCAAAAGTAATCGATTCTACATTGACCGTCGACGATATTGAGCGATGTACCGGTGTGCGGGTGGAAGATGAGAACATATCGTGCGTTATTTGTGAAGTGTGCCACAACAAGCTGCAAAAATTCACCATATACCGTACGTTCTGTATGAGCAATGATGTGCGCTTTAGGGAAATGTTCTCTGCAATATGTGCAAGTGAATGCGATGAAACTAAAGCACCACACGCGATATTCGAACACAATTACTTTTCTATCGGACACCGGAACTTGGACGATCACATCGATTACCTGATCAGCTACGTTGAACCAACGGAGGATGGTTATGAAGAGGCAGTTGAGGCTTTTGGGATTGAAGAACATTTAGAGTCCGAAGAAAATGATGAAATCCTCGAACAAACTAAACAGCAAATGAGCAATGGGGAGTTGAAAGATGCGTCCGTACCGTCATCGTTGCCACCAAAACAAACTGAAATTCCCGTAAAAGTTCATTGCAAAACGAAACCACGCAAAATGTACGTGAAACGTAGCACTGCAAAACCTGCAACAGAGCAGAGTAGTTCGACaaaaaaaCCACGGTCTaaaaaaaGGCGCATACGAAACAAGCTGCCAAAGAAACTGTGCCCAATGTGTGGCAAGTTGGTAGCAAACTTACAGCATCACATCCTATCGCACACGAAGGAGCAAAGGTACACCTGCGAACACTGTCCGAAGACCTGCAGTCGTAAATCGTACCTGAAGCTGCACGTGGAAGCGGTACACTTAAAGAAACCCGTAAAATATTGTGAAGAATGTGACAGGCAATTTATGCACAAGTCCAGTTACGCATCCCATATGCGAGCAAAACACAATATAGGCAAATGGTTCGATTGCAATCTCTGTGATCTGAAGTTCCGTCATCCGGGAGGCTTGCGGGACCACAACAATCGCAAGCACAATATTGAGAGCAATTGCACCTGTACGATTTGTGGCATGAGGTTTCAAGACAAAAACGGATTGAAGAATCATCATCGGGTGCACTCAAACGAGCAACCGTTTGCGTGTCGCTTTTGTCCGAAGCGATTCAAAAGTCCAAATGCACACCGGGCACATGAGCTGATTCATCAGGGCGTCATTTTCACATGCTCTTACTGTGAAAAAATCTATCGGTACAAATCGTTGCTCAATATGCATGTGAAAAAGGTTCATCTAAAGCAGGAGGAACTTAACGATGCGGCTCTATTTCCCGTGTCAAGCATTATCGATCCCTCGCTAACGGATGTGGATATAGAGCGTTTCACCGGTATAGCGCTATTCGGCGAAGAAAACATATCTTACTCTATTTGCGTGGATTGTGGTAATAAACTGAAAAAGTGCTCTTTATTTCGCGCAGCCTGTTTGAACAATGACGCACTATTTAAGGAGCTGTTTGTGGTGCTGCTTGAAAGTGCCAGAAAGCATACTAGTAGTGGAGAAACCCGTGATACAAATGGCGAAACAACACAGACCGAGGATGAAAAGGTTGAAGAGATCCAGATAATCGATGTAAATGAATGCTTGGAAGGGGGCGATTTGGAAATTGAAATTGAGGAGCTTCAAGAGGAAGAGCACACCTATGACGAATCGGAAGAAGAATCACAGGAAAATTGTCAAAGCGAAGACGAGTTTGTGGCCAATAATACGTTGGATGAAAACACTGAAAATGAAGCTAAAGATAATCAACCCCGAAGTAAGCGAATGTCCTCCCGTTTATCCAGGAACGTGAGAAATTCTCAAGCGAGCTCCAATAATCACTCACCTAAGAGAGCAGGCAACTATCAGCATTGTGATGAGTGCGGGAAGATGGTTTCAGATCTCAAAAGTCATATGCTAAGCCATACGAAGGAAAAACGTTTCGCTTGCCCCTACTGTTCAGTGACGATGGCATTCAAATCGAATCTAAACATTCACATTAAGACCGTCCATTTGAAGGTGATTTCGAAATCGTGTGAGCTGTGTGGGCAAGGGTTCGTTAATTACAATTCGTACAAAAACCATATGGCCTCACAGCACGGAACGGGTGAATATAATTGTGAAACGTGTTCGAAAAAGTTTACGCACCTTAGAACGTATAACACCCATGTCCGCCGGTACCACAAAAGCGACGCAACGTTTAAGAAGAAAAAGCAACTATGCGGCACGTGTGGCGCCATGGTAACGCATATAGCGACGCATATGTTAACCCACACGCAGGaaaaaaaGTATGCCTGTCCACACTGTTCGATCGAAATGGTGGACAGGGGTAATCTGATGCGGCATGTCCGGTCGGTTCATCTGCAGAGTGAAGTAAAGTCGTGCGAAACGTGCGGCATAGGATTCAAGTATCCTAGCTCACACAGATCTCATATGCTACGAGTGCACGGTATTGGTAAAACGTTCGATTGCCACATGTGTTCGAAAAAGTTCAATCACAACAGTGGGCTTAAATCACACTTTGCCCGAGTACACAGTAATGAACGAAAGTTTGAATGTGAAACATGTGGGATGCTTTTTAAAGTAAAAGTGGCGCTAACGAAGCATCTACTGGTACACTCAACGGAACAACCGTACGCATGTAATCAATGTCCGAAACGGTTCAAAAGTCGGCATGGACGAAATTCACACCAACTAACCCATAGTGGCATAGTGTTTCCATGTCCACACTGTGACAAATCGTACCGATACAAAGACGTACTTGGTATTCACATCCGCCAGAACCACCCGGAAGCAAAGGCGGATAAGACGATAACGCTGGAGTTTAATCAAACAGACTGA
- Protein Sequence
- MLNDAPVCRFVADVYRLGHLTGIKLTNFLFDESNICYAVCIECHNKLQKFAAYRICCLNNDVRFRSRFPMIFKKEVADDESDAQEDINTVTGTQYIEVVDHSYCGEVYDFSPEEKSAAPVDMQEEIDPEYEELVELYETGDINDDVDEIEEEIVLQNSENIDPVSQECSGETLFQELLPGQDTQFQELDFQETKFSVYEHDGCLQETEDSEDIQDQLPASEPTAQQSLGEESEFEWKEELKSTKRSGKEGAKGARDKAPKKKLCTLCGKLVSYLRDHMLTHTKEQQQFACDRCPFVSSRKANLKMHVQNVHLKRVVKRCEKCDRGFSYVDSYNAHMRAKHNFGEYFECKICSMKFRHRGGLNGHMNRKHNEESNCSCPVCGFVCQDKKGLKDHSRVHSNEKPFACRHCPKGFKSPYARRTHELIHKGVVFTCTVCEKSYRYKSQLVIHARKHNNQHGTEMEENELSSVCRLCMCEGESVLVPFCKILERTLTVEDIERCTGVRIVAEKSIPYSMCEDCYNKLKIFATFRTFCLSNDARFQELFGAILGNLNNDEEYTQETNNYDNTLPGIADHIGYIATNEGSTSESKIAKVEYLNPDVDDDKLAHSSWKWEEIEDNLEIDGENEKTILEEHNNRTIPKHGENLRQDKEVCVKENENPEEMSCSETMQADLVTNRECNLEYIGSTSDGESNDIEKTPNAQHPSDASYDKNSRKQLCPMCGKMVYDLADHIISHTKERKHVCSYCSMAYGRKTYLKMHVEAVHLKKVVKRCEQCNRDFTQRTGYEAHMRAQHNIGKWYGCKQCNVQFRHPGGLREHNNRKHNDKSEQCPVCGMEFQTKTGLKNHSRVHSSVKVFACKYCPKRFKSPNSHKQHELTHLGVTFPLCLSENESILLATSKVIDSTLTVDDIERCTGVRVEDENISCVICEVCHNKLQKFTIYRTFCMSNDVRFREMFSAICASECDETKAPHAIFEHNYFSIGHRNLDDHIDYLISYVEPTEDGYEEAVEAFGIEEHLESEENDEILEQTKQQMSNGELKDASVPSSLPPKQTEIPVKVHCKTKPRKMYVKRSTAKPATEQSSSTKKPRSKKRRIRNKLPKKLCPMCGKLVANLQHHILSHTKEQRYTCEHCPKTCSRKSYLKLHVEAVHLKKPVKYCEECDRQFMHKSSYASHMRAKHNIGKWFDCNLCDLKFRHPGGLRDHNNRKHNIESNCTCTICGMRFQDKNGLKNHHRVHSNEQPFACRFCPKRFKSPNAHRAHELIHQGVIFTCSYCEKIYRYKSLLNMHVKKVHLKQEELNDAALFPVSSIIDPSLTDVDIERFTGIALFGEENISYSICVDCGNKLKKCSLFRAACLNNDALFKELFVVLLESARKHTSSGETRDTNGETTQTEDEKVEEIQIIDVNECLEGGDLEIEIEELQEEEHTYDESEEESQENCQSEDEFVANNTLDENTENEAKDNQPRSKRMSSRLSRNVRNSQASSNNHSPKRAGNYQHCDECGKMVSDLKSHMLSHTKEKRFACPYCSVTMAFKSNLNIHIKTVHLKVISKSCELCGQGFVNYNSYKNHMASQHGTGEYNCETCSKKFTHLRTYNTHVRRYHKSDATFKKKKQLCGTCGAMVTHIATHMLTHTQEKKYACPHCSIEMVDRGNLMRHVRSVHLQSEVKSCETCGIGFKYPSSHRSHMLRVHGIGKTFDCHMCSKKFNHNSGLKSHFARVHSNERKFECETCGMLFKVKVALTKHLLVHSTEQPYACNQCPKRFKSRHGRNSHQLTHSGIVFPCPHCDKSYRYKDVLGIHIRQNHPEAKADKTITLEFNQTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -