Achr010508.1
Basic Information
- Insect
- Anopheles christyi
- Gene Symbol
- -
- Assembly
- GCA_000349165.1
- Location
- KB703479:1101-4785[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.5e-12 7.4e-09 34.5 0.0 2 39 427 465 426 469 0.90 2 4 1.8e-12 2.4e-09 36.1 0.1 2 39 481 518 480 521 0.94 3 4 2.7e-18 3.6e-15 54.7 0.0 3 45 537 580 535 580 0.97 4 4 1.8e-17 2.5e-14 52.0 0.0 1 43 587 630 587 631 0.96
Sequence Information
- Coding Sequence
- AGTTTACTGCGGACGGCAGAACAGCTGAAAATCAAAGGCCTGTGTGAGGTTGGCGAACCACAGTACGAGCAGGATTACTCACCCGCATTAAAACGCTACAAACCGTACCGGTCACGATCGCCACCGGACAACAGGcatcagcaccatcatccaccaccaccaccaccaccgccatcCGGTTCGTCAGGATCGACTAGTGGGGGCCGCTCTGGTTCGTCTGGTGCAGGAGGAGGATCGCACGGAGGAGGTGGTAGCAGCGGTGGCAGTGGTAGCAATAACAACAACAGTTCGTCTTCCTCCCAGTCGACGGGATACAGTGAGAACGGCAAGGGCTGTAGTACCGGCAAGGGCGGTAGCGGAGGCGGTGGAGGAGGAACAGGGTCTGGGATAGGACGTAGCCTTTatcacccttcacagcatcatcacccgctgcaccatcatcaacatcatcatccgcacctgcatcatctgcatcaGCTGCCCCTCGGAGGTGATCCGCGCACACCTGGCCATATTGTGGATGACGACGATGATGGATCACCATCGTCGGTACTAGTGGTGGAAACGCACGATCTAACGACGACGGGATCGAAAGATAAACATTatcagcagcatcaccatcagtcgcagcaatcgcagcaccaccatcatcaccacccgcaccatcctcatcatccgcactcgcagcagcagcatcCCCTTGGAAGCAAAATGGCCAGCCTAGGGATGGGCGTTGGAATAAATGGTGGTTCCGTTATGGGCGTATCGATGGGTTATTTGGATTTTGCACCAGAGCCTCCAGCACCGACGGCGACGCCAGTGACAGAACATGTGGACATTAATTGTGCGCCTAGTAGCCACGATACACGTGATCTGTCCAGTAAGTGTTACCAGCATCCGGAGAATTTGGTTACTGGCAGTGGTGGTGCGGGCTCGGTAACGCCTGGTCCACCCACCAACAGCAGCAATGGAGGAGGCCCGCAAGCGGGGGGCGATGAGATGAAGCCCAGACTGAACCTGAAGCAGGAAAACATTAGTGACGGTGCGGAGCAGCAGCATCAAACGATGGAGGTCGAGCAGGATCAATCGTCGATGCACGGCATGGTGGTAACACCGGAAATTTCGGGCATCATGAACCAGAGCCAAATGAGCGATATGTATCAGTCAGATGCTAGCGAAGACTCGAAAGTGGGCATTCTGGATGGCTCCTCGATGCAGTACACAAATCTGACCAGTCCCAATGAAGCAAAAACGCCTACCGGACCGAAAACCTGGACCGCCGAAGATATGGAATCAGCGCTAGAAGCGCTACGTTCTCACAACATGAGCTTGACAAAGGCATCGGCTACGTACGGTATCCCATCGACGACACTGTGGCAACGTGCCCACCGGCTTGGCATTGATACACCGAAAAAGGAGGGTCCGTCAAAAACGTGGAATGAAGATTCGCTTAACAGCGCACTAGAAGCGCTACGGACGGGTACGATCTCTGCCAACAAGGCGTCGAAAGCGTTCGGCATACCGTCGTCGACGTTGTACAAGATTGCGCGCCGCGAAGGTATCCGCCTGGCGGCTCCATTTAATGCCGCACCCACTACCTGGTCCGCGGAAGATTTGGACCGTGCCTTGGAAGCGATTCGTGCGGGGCAAACCTCAGTGCAGAAGGCCAGCACCGAGTTTGGCATCCCGACCGGTACGTTGTACGGGCGCTGCAAACGCGAGGGCATCGAACTGTCCCGATCCAATCCCACACCCTGGTCCGAAGATGCGATGATGGAGGCCTTGGAATCTGTAAAGCAAGGACATATGTCTATCAATCAGGCCGCCATCCACTATAATCTACCGTACAGCTCACTGTACGGTCGGTTCAAGCGTGGCAAATACGATACGCCCAGCTCGGGAggcggcggcggcggcggTGGTGGCAGTTCGTCCAAtgctgctgctgctgctgctgctACCGGTGGTGGCGCCGGCAGTGGTGGCGGTAGTGGTGCTGGCAGTGCCACTAGTGCCGGAACAGGTGGCAATAATGTTGGCAGTAGTCCCCAGATGGAGTTTAAAATAGAACCACAGCATAACGATCATAGTCCAGAGAACACGGTAAATTACAGTTATTATTaa
- Protein Sequence
- SLLRTAEQLKIKGLCEVGEPQYEQDYSPALKRYKPYRSRSPPDNRHQHHHPPPPPPPPSGSSGSTSGGRSGSSGAGGGSHGGGGSSGGSGSNNNNSSSSSQSTGYSENGKGCSTGKGGSGGGGGGTGSGIGRSLYHPSQHHHPLHHHQHHHPHLHHLHQLPLGGDPRTPGHIVDDDDDGSPSSVLVVETHDLTTTGSKDKHYQQHHHQSQQSQHHHHHHPHHPHHPHSQQQHPLGSKMASLGMGVGINGGSVMGVSMGYLDFAPEPPAPTATPVTEHVDINCAPSSHDTRDLSSKCYQHPENLVTGSGGAGSVTPGPPTNSSNGGGPQAGGDEMKPRLNLKQENISDGAEQQHQTMEVEQDQSSMHGMVVTPEISGIMNQSQMSDMYQSDASEDSKVGILDGSSMQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGGGGSSSNAAAAAAATGGGAGSGGGSGAGSATSAGTGGNNVGSSPQMEFKIEPQHNDHSPENTVNYSYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -