Basic Information

Gene Symbol
nfxl1
Assembly
GCA_943735745.2
Location
OX030927.2:59094980-59098006[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.91 6.6e+03 -3.0 1.4 14 19 211 216 211 216 0.86
2 18 0.11 8.1e+02 -0.1 0.4 4 10 247 253 246 255 0.94
3 18 2.2e-06 0.016 14.9 20.6 1 19 261 278 261 278 0.98
4 18 2 1.4e+04 -4.2 2.6 5 10 303 308 303 308 0.94
5 18 5.2e-05 0.38 10.5 15.3 1 19 314 333 314 333 0.93
6 18 0.47 3.4e+03 -2.1 0.3 6 10 358 362 357 363 0.90
7 18 4.7e-05 0.34 10.7 15.8 1 19 368 386 362 386 0.90
8 18 0.89 6.4e+03 -3.0 0.5 1 8 411 417 410 418 0.50
9 18 8.4e-09 6.1e-05 22.7 10.8 1 18 421 438 421 439 0.97
10 18 2 1.4e+04 -5.1 2.3 5 10 462 467 462 467 0.91
11 18 5.9e-06 0.042 13.6 16.3 1 18 473 490 473 491 0.97
12 18 2.8e-06 0.02 14.6 21.5 1 18 500 517 500 518 0.97
13 18 0.0037 27 4.6 15.5 8 19 563 574 557 574 0.87
14 18 0.047 3.4e+02 1.1 5.6 3 12 587 596 577 596 0.85
15 18 4.3e-05 0.31 10.8 3.9 1 12 667 678 667 678 0.97
16 18 1 7.4e+03 -3.2 1.1 15 18 691 694 690 695 0.85
17 18 0.0022 16 5.3 16.1 4 19 708 723 706 723 0.93
18 18 4e-07 0.0029 17.3 13.3 1 16 781 795 781 801 0.93

Sequence Information

Coding Sequence
ATGGCCTATCGCGATCGTAAGTTACAAGCGCCGAAAGTCCCCAACGCTTGGAGGCTTCCGGCACCGCCCACGCAGCCCGCCGTGGGCCAAAAGAAAACCTCGGCCTCAAGTACTGGCAACCGATTGCCGGAGGAGCGCTTGAGCGGTTCCAAGATTCCGCAACCGAAACTTTCCTCGTCGGGTGGTAAGCAAAAGACCGCTCAGGAAAAGTTTAATCAAGTCCAGCGAGAGCACATGGAAAAGGCGCGGCTCTATACGAAGGAATATATCTCGagcgaggaagaggaggatgACGGTGGTCAGGCTGCGGGTGGTGCGGCCACCCAAAACATTCTCGGCGAGGTGTTGAAGAACTATCACGGAGCAGACTCGGACATGGGCAAAACGCAGGAATATCTCCAGAATTTGCTCGAATCGCGCAATGCCGTTTGCTTGATCTGCATAGAGACCGTCAAACGAGCGGATAAGATTTGGTCCTGCCACTCGTGCTACACGTTTTTCCACCTCATGTGCATCCAACGGTGGGCCAACGACAGCATCTCAATGAAGCGCATCAATCACGAGCAGCAGGAAGGTTACTATAACAACCGGGGGGAGTACGTGCCGAAGCCCGTTCTCTCCGTACACTGGGATTGCCCAAAGTGTCGCAAAGAGTACGAACCGGTCGACATTCCGCGTCACTACGAGTGTTTCTGCGGGAAGGAACGAGATCCGAGTCAGCATCCGTGGCTCATACCACATTCCTGTGGGGAAACGTGTGGCAAGCAGCTGAAACCCTCCTGTGGTCACCACTGCCGGTTGCTCTGCCACCCGGGGCCGTGTCCCCCGTGTCCGCAGACGATCAATGTTTCATGCAGATGCGCGAAATCGGCTCCGAAAACTATCCGATGTTCGCAGCAATCCTGGACCTGCACACAGAAGTGCCCACGGAAGCTTGGCTGTGGAATTCACGGGTGCGGTCAACTTTGCCATCCCATCGGCGAgtgtcctcagtgcaaaaatcgcAGCCAACAGCAGTGTCTGTGTGGGGACGCGACGAAGGAGGTGAATTGTTACGAATCCCGCTGGCAGTGCGAGAAGATCTGCGGTCGACCATTCGCCTGCAACTTGCACAAATGTGAGCGAAGCTGTCACGAGGGCGGCTGTGGTGATTGTCCGCTGGGTTTGCCACGTTCCTGTCCATGCGGCCGTATGGAAACGCGAGCCGCGTGCTCGGAACGGATTGGAACTTGTGGCGATACCTGCCAGAAGGTGTTGGTGTGCGGTGTGCATCGCTGTGCCGACCGGTGCCACGAGGGTGACTGCGGAACCTGTCTCGAGTTGGTGCAGAAAACATGCCGCTGCGGGCTGCTGACCAAGGAGATGCCCTGCGCCAAGGAAGCGACATGTGAAACGAAGTGCAAGAAGCTGCGTAGCTGCGGGAAGCACCCGTGCAATCGGAAATGCTGCGATGGAAACTGCCCCGATTGTGACAAAGTTTGCGGCAAGACGCTGGCCTGCGGAAAACACAAATGTTCCTCCTGTTGCCATCACGGACCATGCTATCCTTGTAATCAAAAGTCGGTCATCAAGTGTCGGTGCGGCGGAACAGCAACCGAAGTGCCGTGTGGCCGCGAGAAACGAGCCAGCGCTCCGAAATGCAGACTGCCGTGTCGCATTCCGCCAAAGTGCCACCATCAAAATCCGCACCCATGCCACACCGGTGACTGTCCTCCCTGTAGCAAACCGTGCGGGGAGCCAAACGATACGACAAAGTGCGAGCATCCGTGCAGCGCAAAGTGTCACGACGCGGTCAGGGTGGTGACTAAGGATAAAAACTTCAAGCCCGTCGGCCCGTGGGATGTGGCGCAGGAGATTGTGGAGATCAAGGCGCTGCCTCACCCGGCGTGCGAGGTCAAGGTCCCGGTGATGTGTCTCGGTGGGCACGAGACTTCGGACTGGCCatgctcgaactcgaaaccgGCTTCCTGTGGAAGACCTTGCGCAAGGCTGCTCAAGTGCGGTATGCATCGGTGCGTGTTGCTGTGTCACAAGGTCACGCATCGCGCAAGCACTACGCAAGACTCCCGCTGTGAACCGTGTGCAGCAGGTTGTGAGATACCGCGACCGACTGGGTGTTTGCATCCGTGCAAGCGGCGATGTCATGAACCCCCTTGCCAGCCGTGTTCAATTTCCATCAAAGACAAGTGTTACTGTGGCCTCACGCAAGTTTTCTACACTTGCAACGAGTTTTATCCGCCCGACCTGGAGGACGGCGAAAAGGAGGATGTGGCGGAAGAATTGAAACGACGCCGGATCTCCGTGCTCAGTTGCGGCCAGAAATGCATCAAGAACCTTCCTTGTGGACATCGTTGCTCGGCCACCTGCCATCCGGGACCCTGTCCGAATCCCGAGCTGTGCACGAAGAAGGTGAAAGTCACCTGCAAATGCTACCAACGGAAGTCGGAAGTGCCGTGTAATGTCGCCAAAGACTCTGTCCCTCTGGAATGCGACGCCGCTTGCGAAGCCATCCGGGCAAAGAAGCAACAAGAGGAGGAACTGAAGGAAAACGAACGCCGCACACGGGAGGAGCTAGAGAACCAAAAGGAGCTGGAAGAATACGAGCGGAAGTTTGCCCGCCGGAAGCACCGCGAGCGGAAACGGCACGAGGTGAAGGAGGAAGAAGGTCGCAATCCGTGGCTGTACGTGTTGCCCGCAGCGATCGTCGTGGTGGGAATCGTCATGTATTTTGTGttgattcaataa
Protein Sequence
MAYRDRKLQAPKVPNAWRLPAPPTQPAVGQKKTSASSTGNRLPEERLSGSKIPQPKLSSSGGKQKTAQEKFNQVQREHMEKARLYTKEYISSEEEEDDGGQAAGGAATQNILGEVLKNYHGADSDMGKTQEYLQNLLESRNAVCLICIETVKRADKIWSCHSCYTFFHLMCIQRWANDSISMKRINHEQQEGYYNNRGEYVPKPVLSVHWDCPKCRKEYEPVDIPRHYECFCGKERDPSQHPWLIPHSCGETCGKQLKPSCGHHCRLLCHPGPCPPCPQTINVSCRCAKSAPKTIRCSQQSWTCTQKCPRKLGCGIHGCGQLCHPIGECPQCKNRSQQQCLCGDATKEVNCYESRWQCEKICGRPFACNLHKCERSCHEGGCGDCPLGLPRSCPCGRMETRAACSERIGTCGDTCQKVLVCGVHRCADRCHEGDCGTCLELVQKTCRCGLLTKEMPCAKEATCETKCKKLRSCGKHPCNRKCCDGNCPDCDKVCGKTLACGKHKCSSCCHHGPCYPCNQKSVIKCRCGGTATEVPCGREKRASAPKCRLPCRIPPKCHHQNPHPCHTGDCPPCSKPCGEPNDTTKCEHPCSAKCHDAVRVVTKDKNFKPVGPWDVAQEIVEIKALPHPACEVKVPVMCLGGHETSDWPCSNSKPASCGRPCARLLKCGMHRCVLLCHKVTHRASTTQDSRCEPCAAGCEIPRPTGCLHPCKRRCHEPPCQPCSISIKDKCYCGLTQVFYTCNEFYPPDLEDGEKEDVAEELKRRRISVLSCGQKCIKNLPCGHRCSATCHPGPCPNPELCTKKVKVTCKCYQRKSEVPCNVAKDSVPLECDAACEAIRAKKQQEEELKENERRTREELENQKELEEYERKFARRKHRERKRHEVKEEEGRNPWLYVLPAAIVVVGIVMYFVLIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00097463;
90% Identity
iTF_00097463;
80% Identity
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