Abel006156.1
Basic Information
- Insect
- Anopheles bellator
- Gene Symbol
- -
- Assembly
- GCA_943735745.2
- Location
- OX030928.2:5386421-5388591[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.5 2e+02 2.5 1.2 3 21 265 283 263 286 0.86 2 13 0.37 21 5.5 1.0 1 23 292 314 292 314 0.97 3 13 0.048 2.8 8.3 0.4 1 21 318 338 318 339 0.92 4 13 0.0011 0.061 13.5 1.8 1 23 343 365 343 365 0.98 5 13 2.9e-06 0.00017 21.6 0.8 2 21 374 393 374 394 0.93 6 13 8e-06 0.00046 20.2 0.7 2 23 441 463 440 463 0.95 7 13 0.57 33 4.9 3.3 1 23 471 493 471 493 0.85 8 13 0.0088 0.5 10.6 0.1 2 23 511 533 510 533 0.91 9 13 1.2e-05 0.00068 19.6 1.5 1 23 540 563 540 563 0.93 10 13 0.00087 0.05 13.8 2.1 1 23 570 592 570 592 0.97 11 13 1.3e-05 0.00076 19.5 3.5 1 23 598 620 598 620 0.97 12 13 5.2e-06 0.0003 20.8 4.6 1 23 626 648 626 648 0.98 13 13 0.00012 0.007 16.5 0.3 1 23 654 677 654 677 0.97
Sequence Information
- Coding Sequence
- ATGCCGCCCGACAGTGCACCGATTGAGTTGACCAGCCAAACATGTCGCCTCTGCCTGAACATCAGTAACGAATTGTTAGCCATCGAGTCTGCCCTCACGCCGTCCGAGCTAAGTAACGTCGTGGACAAATTTCTTAACATCGACCTAAAGGACAACTGGCCTTTCAACAATGCTTGCGACAACTGCCTGTACGAAGTGCGCCGGATGGAGAACCTCCGAGTGGCATACGATGAAAAGAATCGCATTTTTGATGTACTTTGGACACAATACAAACGAATCCACTCGCAAGAGAACAAGAAATCGATTGTGATTCACCAGGATCTGGTTAACATGAACAAAGTTACGGAAGGATACATAATCGGCGACATGGTTCTAGAAAATACGGGGTTGGATGCAGATTCTACGACGTTGCTCATCAAGAGCGCGGACGACCATGGACTGGATATGATCATCAAGCGGGAAGATATCGACTCGGCACTCGAGGAGGAGCTAGTGTACGAGGAAATGCTCCTGGAAGAATCGGAACTCGACGACAACATTGAGCTTATAGAGGAAGACAAAGAGGTGTTACTTGGGGAAgagcaggaagaagaaaagatgCAAATGGCGCAGCATGCGACGGAACATGATCCAAATGAAGACATAGAAGTGATTGATGAAGAAATTGAGGGGTACCATATTCATTCGGTTTCCGAACTAGAAGAACCCTGCAACGCAACGGCCAGCGGAAACGAACTCGAGCAGGAGCCAGTCGATGATAGTGAAGGCTATTTCGATAGAACGTTAAATTGTTGCTATCTCTGCATGCAGACATTCGATGATCTGGAGAGTCTCAACGAACACTTTGACGGTCAGCACCAGGATGCGTTGCCGTTCCACTGCGACAAGTGTCTCGCATACTATCCGACATTTGAGGACGTTAATCGCCACCTCATCTCACACGTTTACCCATTCGTGTGTCTGTACTGCCCCCGCCAGTACAGTGACGAGCGCCGACTGCTGCAGCATAATAAAACATGCCGCTCCTACAGATGCCCTCACTGTCCGGCCGAGTTTGAGGTTATGGCGCATctgaacacacacaaaaaacagcaCACGGCCCTGGTACGGTTAGCGAATCGTTGCAGAAGTTGCGGCAAAACATTCACTCAGCAAAGCAATCTGGTGCGCCACCTAAACATGCGAAACTGCGGGAAAACCGGAACAAAGTTGTCGAACAAAGCGGAGCGTGCGGCCCTTTTGGAGCGTATGCGACCCGCCAAGCAGCGAAGTGAAAGCAGTTTGAGTGGCCACGATGGGATGCGGCTGAAGAATGTGCTCGTGTGCCAGGTGTGCGGCCGCAGTTTCGATAGCAATTGCAACCTGGCCCGCCACATTGACCGGGAGCATGCGGAATTCAAGTTTCAGCTGTTTGCGTGCGACGTATGTCCAAAGAAGTTCACCGTGTTCGAGAAATGTATCCGCCACCGGACGTTTCACAGGCGCTCGCGGCAAAAGCCAAAACAGGCGAAGCAGGGTGGCTCCGACACGGTGTGCAAAATATGCCAAAAGGAGTTCCGGGTCGACTATTTGATGCTGCGCCACTTGGCAGAGGCCCactcgctggcgctggagTTGTTTCAGTGTGATCAGTGCGGCCGAAAGTTTTCGACTGAGGCGAAACTCCGCAAACACGTTTACAACAGTCACCGTGAGAACAAAACGCTGTACGTGTGCTCGCACTGCGGACAGAAGTTTGAGAAGAGGCTTACCCTGAAGGACCACGAGGCAAAGCACTTGGGAATGCAGGCGTACCGGTGTACCGTGTGCGACAAAACCTTCATCCACAAGCACAGTCTCGACCGGCACGCACTCGTGCACAGTGACACGAAGATGTTTGAGTGCGAATTTTGTCACAAGAGCTTCAAGCGCAACAATACCCTCGTGATCCACCGGAGAACACACACCGGAGAGAAACCTTACGAGTGTGAACCATGTGGTCTACGATTTATCGACTCGAGTACGCTCATCAAGCACCGTCAACGTCAGCACACGAAAACCGAGTGA
- Protein Sequence
- MPPDSAPIELTSQTCRLCLNISNELLAIESALTPSELSNVVDKFLNIDLKDNWPFNNACDNCLYEVRRMENLRVAYDEKNRIFDVLWTQYKRIHSQENKKSIVIHQDLVNMNKVTEGYIIGDMVLENTGLDADSTTLLIKSADDHGLDMIIKREDIDSALEEELVYEEMLLEESELDDNIELIEEDKEVLLGEEQEEEKMQMAQHATEHDPNEDIEVIDEEIEGYHIHSVSELEEPCNATASGNELEQEPVDDSEGYFDRTLNCCYLCMQTFDDLESLNEHFDGQHQDALPFHCDKCLAYYPTFEDVNRHLISHVYPFVCLYCPRQYSDERRLLQHNKTCRSYRCPHCPAEFEVMAHLNTHKKQHTALVRLANRCRSCGKTFTQQSNLVRHLNMRNCGKTGTKLSNKAERAALLERMRPAKQRSESSLSGHDGMRLKNVLVCQVCGRSFDSNCNLARHIDREHAEFKFQLFACDVCPKKFTVFEKCIRHRTFHRRSRQKPKQAKQGGSDTVCKICQKEFRVDYLMLRHLAEAHSLALELFQCDQCGRKFSTEAKLRKHVYNSHRENKTLYVCSHCGQKFEKRLTLKDHEAKHLGMQAYRCTVCDKTFIHKHSLDRHALVHSDTKMFECEFCHKSFKRNNTLVIHRRTHTGEKPYECEPCGLRFIDSSTLIKHRQRQHTKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00097254;
- 90% Identity
- iTF_00097254;
- 80% Identity
- -