Aatr002854.1
Basic Information
- Insect
- Anopheles atroparvus
- Gene Symbol
- -
- Assembly
- GCA_015501955.1
- Location
- CALTRM010000021.1:1180818-1181633[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3e-10 3.9e-07 28.3 0.0 3 38 65 101 64 108 0.89 2 3 0.00051 0.87 8.0 0.0 23 35 134 146 132 154 0.85 3 3 1.5e-11 2.6e-08 32.1 0.0 6 35 177 206 175 213 0.93
Sequence Information
- Coding Sequence
- ATGAAAGAGGTGGCGGAACAGCGGCAGCAGGACGACGAAGGAGCGAATCATTTCGATGAATCGGGTAACCTTTCCTGCATGGAGTCGATGATGCCGGACGAAATGGAGGAGATGAACAGTTCCAACACGGAAGATCTAACGGACACGGGTGCCAAGGAGCCATCCGATGAGAACAGCAACGCTAGCTACGCCGAGCGACTGGAAATGGCGATTAAGGCGGTTGTGAGTTGCGGCATGAGCTTTCGGGCGGCATCGTTTACCTACAACATCCCAAAGACGGTCCTTTGGCGCAAGACCGTGAAAATCTCTCGACCGGTCAAACCGCAGCAACACCAACTCCCAAGCCCGCGAAGGGACGCGATTGAAGCGATAAAGGCCGGGGAAAAGCTGCTCAATGTGAGTCGTCGTTTTGACATTCCCATCTCGACGCTTCACCGCGATAAGATCCGTTTGTACAGCGAGGGCGAGCTACCGGACACGGTGGCGCTGAAACAACGTGATAAGGGGGAAAAGTTTAAGCAACGGGTAATCGAGGCCGCACAGAAGTGTCTGGATGGCGCTATGTCTTTGTCGGAAGCGGCCAGAGCCTACTCCCTACCGAAGACTACCATCTGGCGGAAGATTGGATCGTTGAAAGAGAAACCCGGAAACAGCAGTAGTGGGTCACACAAGCGTGGACGTACGAAACGTGGTACAAAATCTGGCAGCAGCGAAAAGATCTCAGTCGAAGGCTGTAATAGGATTGAGACAAAACAGAAAACGGAGGAAACAAACATGAAGGTGGAACACGAACCGTCCAGTTATGTGCTGATGTGA
- Protein Sequence
- MKEVAEQRQQDDEGANHFDESGNLSCMESMMPDEMEEMNSSNTEDLTDTGAKEPSDENSNASYAERLEMAIKAVVSCGMSFRAASFTYNIPKTVLWRKTVKISRPVKPQQHQLPSPRRDAIEAIKAGEKLLNVSRRFDIPISTLHRDKIRLYSEGELPDTVALKQRDKGEKFKQRVIEAAQKCLDGAMSLSEAARAYSLPKTTIWRKIGSLKEKPGNSSSGSHKRGRTKRGTKSGSSEKISVEGCNRIETKQKTEETNMKVEHEPSSYVLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -