Aara009386.1
Basic Information
- Insect
- Anopheles arabiensis
- Gene Symbol
- -
- Assembly
- GCA_016920715.1
- Location
- NC:7539691-7541705[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.047 2.2 8.4 1.7 1 15 209 223 209 226 0.92 2 11 0.027 1.3 9.1 4.6 1 23 309 331 309 331 0.95 3 11 2.3 1.1e+02 3.1 0.1 2 19 335 351 334 355 0.71 4 11 0.0012 0.056 13.4 2.8 1 23 359 382 359 382 0.92 5 11 0.00024 0.011 15.6 0.5 1 23 388 411 388 411 0.97 6 11 1.8e-05 0.00085 19.1 1.4 1 21 439 459 439 460 0.94 7 11 0.43 20 5.3 0.5 2 23 465 485 464 485 0.92 8 11 0.4 19 5.4 0.3 2 22 491 512 490 515 0.78 9 11 2.8e-05 0.0013 18.5 0.5 1 20 545 564 545 566 0.95 10 11 0.087 4.2 7.5 1.4 1 23 570 591 570 591 0.76 11 11 0.0015 0.07 13.1 1.8 1 20 595 614 595 616 0.92
Sequence Information
- Coding Sequence
- ATGGAAAGCATGGCAACATGTCGACTCTGCCTAGAGCAGTATTCTCCGAAAAATAGCAGCTTTTGCATACTGAATGAAGCATTTCAAGCTGCATTACAGCGGGTATTTCCGTTCGAGGTTCACCCAGAACCTAATTTTCCATATTATGCGTGCGGCGTGTGTTCGGGAAAGATTTTTAACTTCCACTCCTACGTCGGCTCAGTGGAGGAGAACCAACGTAAACTGCGTGAAGGGTTTCTGATGCTTGCGAACGGTTCAGAAAGTGATTGCACCACCGAAAACGACCTAAAAATTCGATCTGACTGTGTGCGGATTAAGGAAAGCTCACCCCCACTCGCGAATGACGGGCGGCTGGACGAGGTTAGCGTTGGTGGTGCATGTGTGTCCAAGCTAGAAGATGACACAGGGGAGAAAGAAATGGCTACTAAGGTAGTTGGGTTCATCGATGACATTGAGGTTGAAGAATACATTATACAAGAACTGATACCCGAGGAAATCCCTAATATAAGGAATTGTGAAGAAGAATCGGTCGAACCTTGTGAAGCTGCGGAAGATATCGTCCCGGTTCGGTCCGTTTCCGAGCACAATGATGACGCATGGAACGATGCACAAAACGTGGCAAGCTACACTTGCAGTTGGTGTAAGCGAACGTTTGCCAAAAACAGTCACATTTGTATCTCGTACGATTATAGCGCTAAGAAAAAGTTGCACAATTCTAGCTCTCGATCCCGTGTACAATCGAATGGTAACATGGGACACAAAGAAACTCCAAATGCTAGCGATCGGAGGGAGTGTGAAGCTCTTTGGTCAAATGTTGCTGAAGAAGCTTCCGAAACCGGTTCCCGATCTCCCGAACTACGCGGACCAATGCTCGATAGTGACGCAAGCATGAGATCCCGCAAAGCAGCGGCCAACGAAACGTCCTTTTCGTGCGATCAATGCGAACGTACTTTCGCCAGCAAAAAGCAGCGAAATGACCATCGGTACCATCACACCCAGACACAGTGTCCGATCTGTGCGAAACAGATCAAACGCAAATACTTGGCTTCGCACGTTGCCGCTCACGAGGGTGCATTTCGCTGTGAGATTTGCATGCGCACCTACTCTACGCGCAATCATCTGCGCAGGCATAATGCTGTGAAACATTACATCCGCACCACATTTCCATGCGCGTTGTGCAAGTGCAGCTTTCCCAATGCAAGTGCGCTGATCATACACCGGCAGAAGATGCACCGAATACAGAAGTGTTCGGGGTGCAATAAAATGATAGGACCAGCTAAGATGAAGGACTATCTAGCTGCGCACGAAGGTGCGCACCGGTGTGGCATGTGCGGTAGAACGTTTGCCTCTAAAAAAGGTTTGAAGAGGCACACCCAAAAAGCTATACCTTGCAGTTGCCCTATCTGCAAGCAAGTGCTAAGTCCcggaaaggcaaaaaaacatCTGAATGCACACAAAGAGCCGGTGCTGCGGTGTGAAACGTGCGGTAAAGTGCGGTTTACAGCCAAAGAAAGGTTGAAGCTGCACATCCAGAAAGCGGTACATTGCAAGGATATGGATGGAAATGAAGGCCCCACTGGCAAGAAAGGGCTGGCACTTGAAGCGACAACAACAGATGCACACGTGGCCTCGTTCCGGTGCGAAACGTGCGGTAAAACGTTTAGCAAAGCGCAAGGTTTAAAGACGCACACCGAAAACGCTACACCGTGCAAGTGTCCCATCTGCAAGAAAGTGCTCAGCTCGAAAAAGGCCAAAGAACATATGGAAGCACACAATGGAGCGTTCCGGTGTGCGAAATGCGGTAAAACGTTCGCCAGCAAATGTAGCTGGGTGAACCATAGTCAACGAGTTAATGCTTGTAAACCTCAATCAAAGGACTGCGCGAATAATGTAGGTGcgattttgcaataa
- Protein Sequence
- MESMATCRLCLEQYSPKNSSFCILNEAFQAALQRVFPFEVHPEPNFPYYACGVCSGKIFNFHSYVGSVEENQRKLREGFLMLANGSESDCTTENDLKIRSDCVRIKESSPPLANDGRLDEVSVGGACVSKLEDDTGEKEMATKVVGFIDDIEVEEYIIQELIPEEIPNIRNCEEESVEPCEAAEDIVPVRSVSEHNDDAWNDAQNVASYTCSWCKRTFAKNSHICISYDYSAKKKLHNSSSRSRVQSNGNMGHKETPNASDRRECEALWSNVAEEASETGSRSPELRGPMLDSDASMRSRKAAANETSFSCDQCERTFASKKQRNDHRYHHTQTQCPICAKQIKRKYLASHVAAHEGAFRCEICMRTYSTRNHLRRHNAVKHYIRTTFPCALCKCSFPNASALIIHRQKMHRIQKCSGCNKMIGPAKMKDYLAAHEGAHRCGMCGRTFASKKGLKRHTQKAIPCSCPICKQVLSPGKAKKHLNAHKEPVLRCETCGKVRFTAKERLKLHIQKAVHCKDMDGNEGPTGKKGLALEATTTDAHVASFRCETCGKTFSKAQGLKTHTENATPCKCPICKKVLSSKKAKEHMEAHNGAFRCAKCGKTFASKCSWVNHSQRVNACKPQSKDCANNVGAILQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -