Aara001358.1
Basic Information
- Insect
- Anopheles arabiensis
- Gene Symbol
- -
- Assembly
- GCA_016920715.1
- Location
- NC:38544407-38549649[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3 1.1e+02 3.0 1.6 1 22 213 236 213 238 0.62 2 13 0.0047 0.23 11.5 3.3 2 23 245 266 244 266 0.97 3 13 0.0066 0.32 11.0 2.8 2 23 273 294 272 294 0.98 4 13 0.0047 0.23 11.5 0.9 1 23 304 326 304 326 0.97 5 13 1 48 4.2 0.3 9 23 363 378 350 378 0.82 6 13 0.34 16 5.7 0.3 2 23 385 406 384 406 0.95 7 13 4.5e-05 0.0021 17.9 0.3 1 20 444 463 444 464 0.96 8 13 0.0031 0.15 12.1 1.9 2 23 473 494 472 494 0.97 9 13 0.00017 0.008 16.1 0.7 2 23 500 521 499 521 0.95 10 13 6.4 3.1e+02 1.6 2.1 3 23 531 551 529 551 0.87 11 13 0.00016 0.0078 16.1 2.0 3 21 559 577 557 578 0.94 12 13 4.7e-06 0.00022 20.9 0.8 1 23 589 611 589 611 0.99 13 13 0.00034 0.016 15.1 2.5 1 23 617 640 617 640 0.98
Sequence Information
- Coding Sequence
- ATGAAACCGTCCAGTGCTGGGGAAAGTTCAACCGTCGCTATCGACTTCTTCGTGCCGGAGGACGAACAGCCCGTCAAGCGTGGCCGAGGCCGGCCACGGAAGCAGATCAAAGTGGAACCGGACACATCGTTGCGGatcattaaaaaagaaaacaattccaGCATGGACGAGCACAACACCTCCCTGGATTCGACGGGTGGCAACGATGAGCAAGTGCCTGTTAAGCGTCGCCGAGGTCGTCCACCGAAGAATGCGAGTGTGCAGCGAAACGCCTCACCAATCGTACCCACCCCAAGGGCAATAAAGAGAGAGGTAAAAACGGAGCGGGAAGACGAGGATGCGCCGGACAGTGGTGGTACCTCACGACCCGAACGAAGATCGACACGTGTGCGGAAGGCAAAATATTTCAGCGATATGGAGCAGGACagcgatgaggaggaggatgaggaggaagaggtaaaagaggaagaaacagAGCCGAGCGAATATGAACCGGGCGATGATCCGGAGTACGAGGCGAGGCTGCAGCTGCAACGGGAACTGAATATGGATGATTTTGCCTTCTACGAGTATCAGTGCAGTCTGGAGAACGATCACGGTGCGCGCGATAACAAGATCTTTCAGTATGTGGACGAGTTTGCGTGTCACGTCTGTGAGGAGAAAGTGACGTTCAAACGGTTTGCCGAAGCGCACTTGCACTACCGGGTGGAGCACAACCAGCCGCCGTATCTGAAGTGTCCCAGGTGTGAGAAGAAATGCCACACGCCGGGAATGTTCGTGAGTCACATGGAGACGCACGACGATCCGGAGAAGAATAAGTGCCAGATCTGCGGCAAGTACACGGACTGCAACATATCGCTGAAGAAGCACATGCGCGTGCACCAGAGCCAGCTGGAGGAGAACCTCCCGTATCCGTGCAGTTTGTGCAAGCGAAAGTTCGAGACGGAGGATCTGCGGGAGAAGCACGAGAAGCTGCACGTGCCGAAACCGCACGTACCGAAGGAGAAAGGACCCGACCACGAGGTGCTGGACTTTTACAAGGTCATCGCGTGCGATATATGCGAGGAGGAGCAGACCGACTCGCCGACGTACGACAACCTGAGCGACCTGCGCGCCCACATGGTGAAggagcacaacaaaaacatgtaCCTGCGGTGTCCCTATTGTTCCACCAGGCAAGTCAACCGGCAACAGGTCATCACGCACATCGACATGCACAACAATCCGGAAAAGTATCGATGCGAGGTCTGCAAGGAGGTGCACCAGAATCTGCATCAACACATGATGAAGGCCCATGCGCCAACTACGACGGACGAGGCGGACAAAAAGTACAAGTGCGATCAGTGTGGAAGGTCGTTCAACTTCCTGGCGAACTTAAAGATGCACGTGGATTGCGTCCACGGCGTGAAGGACGTGAAGTGCAATGTGTGCAACAAATTCTTCAACTACAGAGCCTATCGGACGCACAAGCGTACCGCGCACACCGACCTGATGCTGATGTGCGAGCTCTGCCCAAAGATGTTCAAAAATCGAAAGTCGTTCGAAGTACACAAAGCTTCGCACGAGGGCCTGTTGCTGCGGATGACGAACTGTGTGCTGTGCGGTAAGCTGATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGGATCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCCATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGCTCCTTCAAGTGCGAGGTGTGCGGCAAGGGTTTCTCCACCAAGCTGACGATGATGGAACATATGACGACGCACACGCGCACCAATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTACAAGCACCGGAAGAAGGCACACCCGCTCGAGTGGCAGGAGGTGCAGGCGCACCCGGAAGAAAACATTGCATCGGTAATCGTCGTTCGAAACTGA
- Protein Sequence
- MKPSSAGESSTVAIDFFVPEDEQPVKRGRGRPRKQIKVEPDTSLRIIKKENNSSMDEHNTSLDSTGGNDEQVPVKRRRGRPPKNASVQRNASPIVPTPRAIKREVKTEREDEDAPDSGGTSRPERRSTRVRKAKYFSDMEQDSDEEEDEEEEVKEEETEPSEYEPGDDPEYEARLQLQRELNMDDFAFYEYQCSLENDHGARDNKIFQYVDEFACHVCEEKVTFKRFAEAHLHYRVEHNQPPYLKCPRCEKKCHTPGMFVSHMETHDDPEKNKCQICGKYTDCNISLKKHMRVHQSQLEENLPYPCSLCKRKFETEDLREKHEKLHVPKPHVPKEKGPDHEVLDFYKVIACDICEEEQTDSPTYDNLSDLRAHMVKEHNKNMYLRCPYCSTRQVNRQQVITHIDMHNNPEKYRCEVCKEVHQNLHQHMMKAHAPTTTDEADKKYKCDQCGRSFNFLANLKMHVDCVHGVKDVKCNVCNKFFNYRAYRTHKRTAHTDLMLMCELCPKMFKNRKSFEVHKASHEGLLLRMTNCVLCGKLIRTCSMSKHMKTIHSEEDPVNCDLCGKMFRTTFHMKRHQKNTCEVTMDSRSFKCEVCGKGFSTKLTMMEHMTTHTRTNQYQCAFCFKSFGYISNLYKHRKKAHPLEWQEVQAHPEENIASVIVVRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -