Aara005554.1
Basic Information
- Insect
- Anopheles arabiensis
- Gene Symbol
- -
- Assembly
- GCA_016920715.1
- Location
- NC:79306019-79308276[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.12 5.6 7.1 0.8 2 23 225 247 224 247 0.92 2 10 0.069 3.3 7.8 0.4 6 23 256 273 256 273 0.97 3 10 3.1e-06 0.00015 21.5 0.8 2 23 280 302 279 302 0.95 4 10 0.0065 0.31 11.1 5.4 1 23 310 332 310 332 0.98 5 10 0.00011 0.0055 16.6 0.4 3 23 337 358 335 358 0.94 6 10 0.00023 0.011 15.6 1.1 1 23 364 386 364 386 0.96 7 10 0.033 1.6 8.8 0.7 2 23 396 418 395 418 0.95 8 10 0.01 0.49 10.4 1.3 1 20 425 444 425 448 0.94 9 10 3.8e-05 0.0018 18.1 0.4 1 23 453 476 453 476 0.92 10 10 0.00079 0.038 13.9 1.1 1 23 482 505 482 505 0.96
Sequence Information
- Coding Sequence
- ATGGACGAAAAGTGTCGATTATGTTTGGCTCGGCTGGAAAATCAACGCTCAAACGCCACCATCGAGCAGGAGGGTTTTAGAGAAAAGCTTAAAACACTGTTCAGCTTCCCGATCACCTCAATCGAAGCATTCCCATCGACGGTGTGCGTGCAGTGTGAGGCAAGGGTGTCCGATTTCCACACCTACCATGAGCAGGTGAAAAGCAACCAGGATCAGCTGTGGTCGACCCAGCATCAGAAGTATTTCGAAGAGGTCAAGGTAGAGCCCGCCCCGGATGCCGACTATGACGTGTTTGAGCTGCCGTTCGTAGAAGTGGAACCGGTTGAAGGTGCGCCGAAGGAGAGCTGTAAAAATGACGAGCAGCTGGACGTGCTGGCCATAGACAGTGATCTCGACGATGGGATGAAGCTGGAGGACGAGTACAATCCTCCGAGCAGCAGCGCTGCTAGCAACAATAATTCAGACGACAGTGAGTACGAGGTGAAACCCCGGAGGTCGAAACGCGTGACGGACACGGCAGACCGCACGAGAACGACACGGCGCGGACGGTCCCCGAAAAGTGAGGCAGGCACGAGGTCGCCCGgtgagcagaagaaaaaatctcCCATCGTGGTGCGGCGGGGCCAGGCGACGAACGAAACCAACCAAAAGCTGCGCGAGTTTTACGACATGAAGTGCGAGATGTGCGAGGAGCGGCTGGAATCGTTCAACGCACTGAAGAAACACTACTATCAAACGCACCGAACGCGCGGCTACATCAAGTGCTGCGGGCGCACGTTCTACAAACAGTACCGGTTACTGGAGCATCTGTCCTACCACGTCGGTTCGAGCATGGTGCGGTGCGAGGAGTGCAACAAAACGTTCAGCAGCCGAAGCTACCTGCTGGTGCACAGGAGCCGCGTCCACGGGCAGCCTGAAGATCGGCCGTACAAGTGCACCCAGTGCCATCAGTCGTACGCGTTGGAGTGCCACCTGAAGGCGCACATCGTGTCGCACGTGCGGGTCAACTGTACGATCTGCGGGAAGGAGCTGGCGAGTGCGCATTCCCTCCGCACGCACATGATCAACATGCACGGCAACAGGGAGAACCACATCTGCGACAGCTGCGGGCGCGAGTTCCGCAGCCGGCCGGCGTTCGAGCGGCACGTTAAGCAACACCTCGGGCTGGAGGTGACCAAACAGATGCAGTGCGAGGTGTGCCACAAGTGGCTCAACAGCAAGCGAGCGCTCAAGGTGCACCTACAGCTGGTGCACATGGAGGCGGGCCAAACGTTCCAGTGCGATATCTGCTCGCAGCAGTACCCGAACAGCCGGGCGCTGGCCAACCACAAGCAGTGCGTGCACGTGGAGGAGCGGTTTAAGTGTGAGGAGTGCGGCAAGCTGTTCAAGCGGCAGCTCTACCTGAAGGAGCACGTGGCCGCCCTGCACACCCGCAAACCGCTCTACTCCTGCGAGGTGTGCGGTGCTACATTCAACTCGAACGCGAACAAATACTCCCACCGCAAGAACAAACATCCGGTGGAGTGGGAAGAGCGCcggaaacagcagcagcagcagcagcaacagcagcaggaacaggCAGTTAGTTTGTAA
- Protein Sequence
- MDEKCRLCLARLENQRSNATIEQEGFREKLKTLFSFPITSIEAFPSTVCVQCEARVSDFHTYHEQVKSNQDQLWSTQHQKYFEEVKVEPAPDADYDVFELPFVEVEPVEGAPKESCKNDEQLDVLAIDSDLDDGMKLEDEYNPPSSSAASNNNSDDSEYEVKPRRSKRVTDTADRTRTTRRGRSPKSEAGTRSPGEQKKKSPIVVRRGQATNETNQKLREFYDMKCEMCEERLESFNALKKHYYQTHRTRGYIKCCGRTFYKQYRLLEHLSYHVGSSMVRCEECNKTFSSRSYLLVHRSRVHGQPEDRPYKCTQCHQSYALECHLKAHIVSHVRVNCTICGKELASAHSLRTHMINMHGNRENHICDSCGREFRSRPAFERHVKQHLGLEVTKQMQCEVCHKWLNSKRALKVHLQLVHMEAGQTFQCDICSQQYPNSRALANHKQCVHVEERFKCEECGKLFKRQLYLKEHVAALHTRKPLYSCEVCGATFNSNANKYSHRKNKHPVEWEERRKQQQQQQQQQQEQAVSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00095942;
- 90% Identity
- iTF_00095942;
- 80% Identity
- -