Aara007686.1
Basic Information
- Insect
- Anopheles arabiensis
- Gene Symbol
- -
- Assembly
- GCA_016920715.1
- Location
- NC:31513931-31521991[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 2.8 1.3e+02 2.8 0.6 2 23 196 218 196 218 0.93 2 28 0.0014 0.067 13.2 0.2 1 19 229 247 229 250 0.95 3 28 0.0012 0.059 13.3 1.1 1 22 403 424 403 424 0.96 4 28 1.1 53 4.0 2.3 3 23 455 478 453 478 0.88 5 28 0.065 3.1 7.9 2.7 1 20 501 520 501 522 0.93 6 28 0.00047 0.023 14.6 0.5 2 23 530 552 529 552 0.96 7 28 8.3e-06 0.0004 20.2 0.5 3 23 561 581 559 581 0.98 8 28 0.0041 0.2 11.7 0.1 1 23 587 612 587 612 0.96 9 28 6.8e-06 0.00033 20.4 2.4 1 23 618 640 618 640 0.98 10 28 1.5 72 3.6 0.9 1 23 646 671 646 671 0.91 11 28 0.14 6.7 6.9 0.7 1 23 677 700 677 700 0.95 12 28 2.8 1.4e+02 2.8 1.6 2 23 1026 1048 1026 1048 0.94 13 28 0.0027 0.13 12.3 0.1 2 20 1058 1076 1057 1078 0.94 14 28 0.15 7.1 6.8 0.8 1 20 1085 1104 1085 1106 0.95 15 28 1.4 69 3.7 2.2 2 23 1231 1253 1230 1253 0.92 16 28 1.5 73 3.6 1.7 1 21 1265 1285 1265 1286 0.94 17 28 0.02 0.95 9.5 1.6 1 21 1293 1313 1293 1318 0.92 18 28 0.0037 0.18 11.8 1.2 3 23 1396 1417 1395 1417 0.90 19 28 2.7 1.3e+02 2.8 0.1 1 20 1430 1449 1430 1451 0.87 20 28 0.035 1.7 8.8 2.8 1 21 1460 1480 1460 1485 0.92 21 28 0.052 2.5 8.2 0.7 2 23 1551 1575 1550 1575 0.84 22 28 5.1 2.4e+02 1.9 0.6 2 20 1592 1610 1592 1612 0.92 23 28 0.0026 0.12 12.3 0.3 1 23 1619 1642 1619 1642 0.94 24 28 4.4e-05 0.0021 17.9 0.1 1 23 1649 1671 1649 1671 0.98 25 28 2.7e-05 0.0013 18.6 2.4 1 23 1677 1700 1677 1700 0.96 26 28 0.00021 0.0099 15.8 0.6 1 23 1706 1728 1706 1728 0.98 27 28 0.014 0.69 10.0 2.5 1 23 1734 1757 1734 1757 0.93 28 28 3.2e-05 0.0016 18.3 0.7 1 23 1763 1785 1763 1785 0.99
Sequence Information
- Coding Sequence
- ATGACTCAACATGATGCTGCATCACAGTGTCGAGTTTGTGATAAAGCGATCCGCGCCCAGAAACCGGTACACATTTTCTCGCCGCTCGTGGGAAATGGGAAGGAAGCGGATATCAGCACGAAAAGCATCGCCGAGATGATGAGCGAATTGGCGGATGTAACGATCAGTCCCACTGATGAACGATCGAAGTACATCTGCTCCGTTTGCTTAAAAGCGCTCGAGAAAGCCTTTCAACTACGTCAACAGATACGAGCTGCCGAAAGGGCTGAGCCGACGCACTTGCAATCGATTCAGATAGAAAACATCGCCGAGCAGGACTACAGTTTGGAGTATTTGGATGAATTTAAAGATGAAATCGATAGCAGCGTTATGCTGCTCCGGGATACACTTACCGCCCTATCCGACGATCTTGGTGGTGAAAATGAGCTTCccgaaaaacaaccaaccgtTCGTGCACTGTCGGAGGTTGAAGAGGACGTCGAAGCGATCGAACAGGGCAAATTTACGTTCATTGTGCCACCGCCGGACCTGATCGCCATTCGGATTGCATTTGAGCACTTTGAGTACTTGGAGCTACGTGGCGAACGGTGTTGCGGCTGTCCACACATTGCTGCGTCTCGCGATGCACTGATGGTGCACGCAAAGGAAACGCACTCCCAAAACTATTACCCCGACGATAGTAGCTACACGTGCCCGATGTGTTACCAAAAGTTTGCCACGGCCAGTGCACTGGAAAGCCACAACCAGTACTATCTGTACAGTGATGTGTTTCTGTGCAGCGTTTGTCGCAATGCGTTCAACTGCCAGAACCGGCTCATGGTGCATCTACAGGGCAGCCATCAGCTAGAACCGTCGCTTAATGATGGAGTGGAGATTGGACCGGAGCAAAATGAGACAGAACCACATTTACAGGAAAAAACGTCCTCATTAGCTAGGACCAATTTACCACTAACATTACCGGAAACAAAGTTTATAAAAGAAACACGCGTTTATCCACAGTATCGACTGTACTGTCTCACCGCAGAACGGTGCTGTGCCTGTGGCGTCTATGAAGAATCGCTCGAACGGCACACCTCCGAATGTCACGTGGAAATGAGCGAGTCGGAAGCGGATGGGCTGCCCCGGTGCATCGTATGTAGCCGTACCTTTCCCACCCACCAGGAGCAAATCCTGCACGAGGAGGAGCGCAGAAATACGAAGCAAATTTACCAATGTCGAAGGTGCGAAAAGCTTTTCGCTCGAAAGAATCAACTTCTGAAGCACTTACAAACAGCAGAGTCCGGTTGCAATGGCCAAGAGGGAAAGATGGAAACGACCATAAAGGATGGCGAACAGGACGGCGTTTCAGGAaactgcttttgctgctgctttgcacGCTGCAAGGAGGAGTACGCGAACGAACGGGATCTGCTCGACCACGCCCGGACCGTGCACGGCGGAAGAAGAAAGGAGAATGAATGCAAGCTGCAGGAACGGTATGGGACGGCAATACCGGAACGGCACTGCTGTCCCATCTGCCGGCGAACGTTCGACAGTGAGGAAAAGGTGCAGAAGCACCGCAGCTATAAGCTTGCCCTGCCCAAGCAAACGTGCCGCCAGTGTGGCCGGGTGTTCATGAAAGCGTCCGGGCTGCGGGAGCACCAGCTACGGGAACATTTGAATCTGCAGCTAGAGTTTGGGTGCGAAGTGTGCGGGAAGCAGTTTGTAAATCGGGCCACGCTGAACAAACACCGCCGGGTGCACGAACCGTCCCGCAACTATCCCTGCTCGGTCGAGGGCTGCGGGATGCTGTTTCGCGACAAGCCGCTGATGCAACGGCACTATCGCAATGTGCATTCGGTGGTGCAGGCGTACGAATGTCCGCACTGCCAGAAGCGCTTCCGGACGAAGGAGTCGCTCGATATACACGAGCGGAGTCATACGGGCGAGCGACCGTTTGCGTGTCGGTACGAGGGGTGCAGCAAGGCGTACGCCCACGGCACCGATCGGAAGCGGCACGAACGGTCGGCACACACGGGCGAGAAGCCCCACACGTGCACGGTTTGTGGGGCGGGATTTTTGCGCCGGCGGGAGATGCGGCTGCACCTGGAAAAGGTTCACGAATGGCAGGAGAAATACAACCCGCACACCTGCGACTTGGTGTCGACCGAGTTCATCAGCTGCCCGTTCGCGACGTTCCAGAACTTGATCGTCCGATCGGCCGTACCGCCCCCGCTCGCTAGCACGACGCCGATGTTGTGCTGGCGCGTCCGCACGTCATGGTTCACGATCGTGCCGTCCCGGCTGCCCGAGCACAGCACGTACGAGTTCCAGGCCAGCACGCCGACCCTGGCCGAATGTCCGTTCATCACCCGGAGCCGCTTCATGTTCTCGCAGTCCCACAGCTCCACCGTGCCGGCGCTCGTGCCCACCGCCAAAATACCCCAAACATCCACCATGCTGCGAAGACCGTCGAAGCGACGAAAAGTGTCCAACGTGGAGAAAGAAGAAACGGAATTCACGCCAACGTTGGGTGAGCAGAAATGCTGCATCTGCTCCAAACATCCGAAGGGCGATTTGCTTGAACTTTCCACGGTTGTAGAATCGGGCAGCTCCCTCACCATTGCCACCGTTGTCGAACAGGTGGCCTCCATCAAGGTTAACAATGTCCAGAAGAGCATTTGCGGTGGTTGTTGGACCAAAATTCAGGCGGCCTACTCGATACAGAAGGAAATCCGCGGATCAGAATGTATGGCACAGCAAGATGTCGAATGCGACAGTgcggaagaggaagagaacGCGGAAAATGCCAACTGTACCGAGCAGGACGATCCGGACCCGCTTGTCGTAGATGGCATTGACGAGAGCGAATATTGCATCGAATATCTGGAGGAACAGGAGGAAGAGCAGCAACCACCAGCAAAGGAAGAAGCCGCAGACATTGAGATTGATGCATGCTGCTCCGACGAGGAAGAGCACGAAGAGGTCCGAGTGGACGGTGGTAAGGTGACGCGTCAGTTCCAAATGCCAAATGAGGCCACGATCGTGGCCGACGTGCTGCACGAGCAGTATCGGATGGTGGAGGTCACCGGGGAACGGTGCTGCGGGTGCAGCTTTGTCGCACGATCACGCAAAGAGCTGCTGCAACACTCGGAAACGGTCCACTCGGTCGAGATGACCGACCACGGCGACTACTGTCCGATTTGTTTCTACAAATTCTCCACCGATCAGCAGCTCGAGCGCCACATCGATGAGTTTAAGCTGAACAAGATGTACGTGTGTTTGCGCTGTAATCGGTTCTACAACGTGAAGCGGAAGCTGTTTAACCACCTGCTCGAATGTGGTGGCATGGTTGAGGAGGTGGATGTGCAGGCAAGCGGAACGAAAAATGATGATGCACTTACGATCGAAGCCCTAAAAGAGGAGGACGGGGACGAGGAGGAAGGGCTGGAGGAAGATAGTCAGTATGAGGAGTGTTACCTGCAGGAAGGCACGGACACGGACGAACAGCAAGAGCTGCACGCGGAGGACCGCCTACAGAACGCAACCGATCCACGTGTGATGCATCGCTACAAAGCACTGTTCGAAGAGGTGCTGTCGAACGAAGAGCTTTACTGCCAGCTGAGCGAGAAGGAACTGAACGTGCAGGATGTGCAGATCGCGGAGCAGCTCGTGTTCGAAACGTTCAAGTACATTCGGTTGCGCGGATTGCGCTGTTGCGGGTGCTCCTACACCTGCATGTCCAAGGCGCTGCTGATTGAGCACAGCAATCTGGCCCATCCGCCCGAAGATCCGTCGCAGCACGTTGATGAGCATTCGTGCGAGCTATGCCGGGCGGAGTTTCAAAACACGCTGAATCTCGTGAAGCATATCTGCTTCTTCACCACCCGGCAGCTGTTCCTGTGCACGGTGTGTGACGTTTCGTTTCTGAACAAGGAAAGCTTGCGGAACCACCAGCGCCACAACGAACGGCACCGCGAGCTGGAGAACTACAAGTTTGAGCAGGCCGGCATCGAGCTCGACACAGCGGAAGGATTTGTCGAGCTCGACCAGCCGGCCGTGGCGGATGAGCTGCGGAagctggtggtggaaaagATTAGCTACCGGCCGAAAGCGGTCACCTGCATTCCCATGCCGGACGAACGGTTCATCCGGCGGAGGAAGGAGTACAACAACTACAGCGTCCTGGTCGTGGCTGGCGAGTATTGCTGCGGGTGTGGCAGGTTCTTCGATACGACTTccgagctgcagcagcacgccgAGCAGGAGCACTATTTGCCGCTCAACTTTTGTGCCCGCACGTACGGCCACCAGTGCGAGATCTGTTACGCCGTGTTTGAGCTCGAGCGGGGCTTCGCGGTGCACCGGTCGATGAGTCGCTCCAAGCAAAAGACACTGTACCTCTGCAAACTCTGTGGGCTGCTGTTTTCGAAGAAGTTCTGCCTAGCGCGGCACATGCATTCGGCCCCGAACCACCTGTCGCGGCTGATCGTTGATGCAGCGGCTAATGCAGACCGCACAGGGGAGGAGCACGATGCGCCGGAGGAAGCAGACGCGGAACCGGGTCCACCCGAGGCAGCCGTATCGGATCCACGCGTGAAGGAAGCGCTACAGTTGCACCGGTCGGTGGAAGCGAAAGGGCTGCGAAAGGTCGGCCATCTCGTCTGGTACCACTGCTGCTTTCCCAAGTGTCCGGAGACGTTCACGAGCGAAGCGGCCCTGCTGGAGCACGCCCAGGCCGAGCACTACGGGCAGCGGCGGGAAAACCAAAACGAGCGCCAGCAGGACACGAACGTGTGTCCCACCTGCTGCAAACCATTCCAAACGCTGGCGAAACTGTACTGGCATCGGGTGAAACGGTTCGTGCCGCGCGAGTATAAGTGCAAACAGTGCGCCAGCACCTTCGACCGGTGGGTGCAGCTGAAGATCCACGTGGAGCAGGAGCACAGCGCCACGCCGCCCAGCTTCGAGTGTGCCGAGTGCGGCAAATCGTTCGTGCTGCGGGCGAGACTGGTCGCCCACCAGAAGACGCACACCGACCGGAAGGACCACAAGTGCGACGTGTGCGGGTGTGCGTTCGTCAACAAGGGGCTGCTGAAGCGGCACCGGCGAGCTCTCCACGCCACCGAGCTGCTGTTTGAGTGTAAACTGTGCTCGAAAAAGTTTGCCGTGGTGGAGAAGCTAAAAATTCACCAGCGCGTCCACACGGGCGAACGCCCCTACGAGTGTACGTTCTGCTCGCGCACCTTCATACACTTTTCCGACCGGAAACGGCACGAGATGGCAGCGCACACGATGGAACGCCCGTACAAGTGCAAGCTCTGCCCGGCATCGTACATTCGCAACCGCGAGCTGAATCTGCACATGCAAAAGCACCAGTCGGATGGAAAGGGGAAAACCCTTGTTAAAAGTAGGGGGGAAACTTGA
- Protein Sequence
- MTQHDAASQCRVCDKAIRAQKPVHIFSPLVGNGKEADISTKSIAEMMSELADVTISPTDERSKYICSVCLKALEKAFQLRQQIRAAERAEPTHLQSIQIENIAEQDYSLEYLDEFKDEIDSSVMLLRDTLTALSDDLGGENELPEKQPTVRALSEVEEDVEAIEQGKFTFIVPPPDLIAIRIAFEHFEYLELRGERCCGCPHIAASRDALMVHAKETHSQNYYPDDSSYTCPMCYQKFATASALESHNQYYLYSDVFLCSVCRNAFNCQNRLMVHLQGSHQLEPSLNDGVEIGPEQNETEPHLQEKTSSLARTNLPLTLPETKFIKETRVYPQYRLYCLTAERCCACGVYEESLERHTSECHVEMSESEADGLPRCIVCSRTFPTHQEQILHEEERRNTKQIYQCRRCEKLFARKNQLLKHLQTAESGCNGQEGKMETTIKDGEQDGVSGNCFCCCFARCKEEYANERDLLDHARTVHGGRRKENECKLQERYGTAIPERHCCPICRRTFDSEEKVQKHRSYKLALPKQTCRQCGRVFMKASGLREHQLREHLNLQLEFGCEVCGKQFVNRATLNKHRRVHEPSRNYPCSVEGCGMLFRDKPLMQRHYRNVHSVVQAYECPHCQKRFRTKESLDIHERSHTGERPFACRYEGCSKAYAHGTDRKRHERSAHTGEKPHTCTVCGAGFLRRREMRLHLEKVHEWQEKYNPHTCDLVSTEFISCPFATFQNLIVRSAVPPPLASTTPMLCWRVRTSWFTIVPSRLPEHSTYEFQASTPTLAECPFITRSRFMFSQSHSSTVPALVPTAKIPQTSTMLRRPSKRRKVSNVEKEETEFTPTLGEQKCCICSKHPKGDLLELSTVVESGSSLTIATVVEQVASIKVNNVQKSICGGCWTKIQAAYSIQKEIRGSECMAQQDVECDSAEEEENAENANCTEQDDPDPLVVDGIDESEYCIEYLEEQEEEQQPPAKEEAADIEIDACCSDEEEHEEVRVDGGKVTRQFQMPNEATIVADVLHEQYRMVEVTGERCCGCSFVARSRKELLQHSETVHSVEMTDHGDYCPICFYKFSTDQQLERHIDEFKLNKMYVCLRCNRFYNVKRKLFNHLLECGGMVEEVDVQASGTKNDDALTIEALKEEDGDEEEGLEEDSQYEECYLQEGTDTDEQQELHAEDRLQNATDPRVMHRYKALFEEVLSNEELYCQLSEKELNVQDVQIAEQLVFETFKYIRLRGLRCCGCSYTCMSKALLIEHSNLAHPPEDPSQHVDEHSCELCRAEFQNTLNLVKHICFFTTRQLFLCTVCDVSFLNKESLRNHQRHNERHRELENYKFEQAGIELDTAEGFVELDQPAVADELRKLVVEKISYRPKAVTCIPMPDERFIRRRKEYNNYSVLVVAGEYCCGCGRFFDTTSELQQHAEQEHYLPLNFCARTYGHQCEICYAVFELERGFAVHRSMSRSKQKTLYLCKLCGLLFSKKFCLARHMHSAPNHLSRLIVDAAANADRTGEEHDAPEEADAEPGPPEAAVSDPRVKEALQLHRSVEAKGLRKVGHLVWYHCCFPKCPETFTSEAALLEHAQAEHYGQRRENQNERQQDTNVCPTCCKPFQTLAKLYWHRVKRFVPREYKCKQCASTFDRWVQLKIHVEQEHSATPPSFECAECGKSFVLRARLVAHQKTHTDRKDHKCDVCGCAFVNKGLLKRHRRALHATELLFECKLCSKKFAVVEKLKIHQRVHTGERPYECTFCSRTFIHFSDRKRHEMAAHTMERPYKCKLCPASYIRNRELNLHMQKHQSDGKGKTLVKSRGET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -