Aara003774.1
Basic Information
- Insect
- Anopheles arabiensis
- Gene Symbol
- -
- Assembly
- GCA_016920715.1
- Location
- NC:93575459-93580931[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.5e-07 0.00027 20.0 0.1 5 35 267 297 266 305 0.90 2 8 0.053 92 2.3 0.0 6 26 362 382 360 383 0.87 3 8 9.8e-09 1.7e-05 23.9 0.1 2 39 449 485 448 489 0.92 4 8 6.1e-13 1.1e-09 37.4 0.1 2 35 589 623 588 632 0.89 5 8 0.5 8.7e+02 -0.8 0.0 3 14 890 901 889 903 0.87 6 8 3.3e-07 0.00057 19.0 0.2 4 36 955 988 953 991 0.88 7 8 0.0003 0.53 9.5 0.0 21 42 1021 1042 1008 1044 0.85 8 8 2e-12 3.5e-09 35.7 0.0 4 38 1064 1098 1062 1103 0.94
Sequence Information
- Coding Sequence
- ATGGCACAGTCATCTTCCGGCCCGACGAAAACGATGCTAGTATGGCTCGACTACAGCCGGCACATGCTGAGCACGCTGCAGGACATTTACGCCGACCAGCAGTACACGGACTGCCGGCTGGTGGTGCCCGACGGTGAGCTGTACGCGAACCGTCCGATACTGAGCATGGCGTCCGGGCTGTTCGAGGCAATCTTCACCAGCATGGTCACGCTCACGATGGACCCGTCCACGGTGCTCATACCGGACATGACGTTCGCCAACCTGCAGCGCGTCGTGCAGTTCATCTACACCGGCCGGGTGACGCTGCAGCCGGACGAGGTCGTTCCGTTTATGGAGGCGTGCGGGCTGCTGCAGCTCCGGGGCGTCGAATGTTGCGGCAACCGCACGATGGGCATTTACATTGACGAATCGGGCCCGGAAGCTACGGCGGAGGACGGTGATCCGTTCGCAACGGCCCCAGAAACGGATCCGCTGCACATCGACCACACCCGGTACCCCGGGGCGGTGGAAAAGGCTGAGCCGCCACCATTAAAACTTATTGAGCCGAATCTCGAATCTACGAGTGAGCTATTTCCGGGCAATATCTGCAAAGAAGAGTTGATGGTATCGGACGAGGACAgtgcggaggaggaggaggaggaggagggtgaTAAAAGTGACGCGGGCGAGGACAGCTCGATGGACGACAGCACGGACAGCGAGCAGGATGTGGAGCGGTGGATGGCGCTGGTGAAGGAGGTTGGAGTGGTCGACACGAGCCACCCGGGAGCGCCGAACTTCACGCCCTACCAGAACTGTCTGAAGCAGGCCATCGTAGCGGTCATTAGCGGGAATGTTTCGCCCAGAAGAGCGGCCGCCCGGTACAACGTACCCGCGAGCAGGCTGGTGCGCTGGACGCAGAAGGTAAAGCGAGCGATGAAAAAGAAACCAGAGACGGTAACTGCCAATGTGTCGCAGATGGTTGCCGCATACATTGACCGGAGCATACAGGAGTTCAAACAGCTGCTGGAAACGAGCGATGCGGACGAACGTGTCAGCTTGCTGAGCGACCCATCAAATGTGCTGATGTACGACGTGCGGATTATGCTCGCGATCCACGACATCATGTACACCGGGATAAGCCTGCGCGAGGCGGTAACGCGGTACAAAAACAGTCTCGGTTTGCTGAGAAACCGGCTGTACAATCTAAAGAGTCAGCGAATAACGAACCATTTTAAGTCGTTCGGCATCAGATTGAAAAGTGCGGACAAACAGACAAACGAGCGACAGGCGGCAGGGAAGAAGCGTCGAAGGTTTGAGACGGAGTCGGGGAAGATTTTGAAAACAGCCGATCCCTCCCGGTACGAGGAGAGTGTGGCCAAAGCGCTGGAGGCGATTGGTTACGGTCTATCTATCCAGCAAGCCGCAAACCACTTTCGCATACACAAAAGTGCTCTATGGCGGCACGCAAAGGCCAAGAACATAACCTTTCCGCAGGAAAGGACAGTTCTAAGGAAGAAAGCAGCGACAAAAAAAGTTAAACCGAGCGGTGGTGGTTCAAGCGCTGCCTCCTCCTCCGCTACGAACAGTTGCCCCGTAGTGCCGAAGCTGGTACCGTTTGGAAGCACTGGAGCCGTCACCACCGCCGAGCGCGTTAGGGATCGTGCAGGAGGTGGTGAGATCGCTCTAGCACCGGCCAGTACGGCGGCTCCTCCGATTGCTGCGCCGAGTTTGCTTCCCCTGCCCAAGTTGGTTCCGATTTCGAGCAGCTCGCTGCCGGAGTACGAGGAGCGGATGGAGGCAGCAATAGCTATGATATCGAATCAGAAAATGAGCTACCGGGAAGCGTCGGTAAAGTACAACATTCCCAAGGCAACACTGTGGAAGAAGATAAGTAAGATGGAGCCGAAGAAAAGCACCGCAAACTGTGCCCGCCTGTGGTTTCTGAGTAAAAAGCGAATAATGTCCTGCACCTTTTCACAGCAAATGGCGAACAGCTCCTGCTTGACGTGGCTCAACTTTCGCGAGCACATGCTAAACACCTTCTGCGGAATCTACCGCACGCAGCAGCACACCGATTGCCGCTTGATCGTACCCGACGGTGAGCTGTACGCGAACCGTCCGATCCTGTGCATGGCATCCAGCTTCCTGGAGACGATTCTGGACGGTCTGCCTACCATCGGTGCGGATATGGTAACGATTGTAATACCGGACTTGACGCTAGCGACGTTACGCGCCGTCCTGCAGTTCATTTACACCGGGGAGGCAAGCGTACGGTCGGACGAAATGGCATCGTTTGTGGAGGCCTGCAGCTTTCTGCAGCTACGCGGAGTGCGTTTTATCGCGAATCAGATTGTGGGCATACGATTCGGCAAGACTGTTGGTATGGTGTCGGAGGAGCTTATTCCTGCCAGCGAAGGTTTGGAAGCGACGGCATGCCCAAGGCAAGAACTGTTCGTTGCGCAAGTGGAGGAACAGGCAGAAGAGgatgaggaagaggaggaacaAACAGAAATGCCCATAACACAATCACAGGTCCAACCTGTTGAATGCTTCATTCCAGAATCGAGCGAATCCGTCCAAGAACACGTTGAAGGTAATGAAATTGTTCAAGTCGTGTTGAATATCCCATCAGATGCGACTCCTGCCTGCGAACGGGAAACCTCTCAATGTGTAGAAATTCCACAGGAACGGTTAACGCAAGCAATTGAAGCAATTATAAAGGACCACGAAAGCTATGAAATCACATCCGTTCCGTGTGCAATCGACACCACCGTCCCAACCTCGTCGGAAACACATACAACGAACCTTCCGCCGTTCGAAGATGAGCTGGAACAAGCAAACCCCGAACCAACACTATCCGACCCTGCCAGTTACGATGCACGTCTTGCGTTAGCGATGGATGCAATCCTTCACCACGGCATTAGCTACCGGATTGCCGCCAGGCAGTATAGCATCGCTAAAACGGTACTGTGGCGCAAGGCGATGAAAATGCCGCGACCGGTTCGGGTCGGCTCCCCGAAGCTGAGCGCTCAACGGCGGGAAGCGATCGATGCACTGAAAACGGGCGAGAAGCTCGCACACGTGAGCCGACGGTTCGAGATTCCGCTGTCGACGCTGCACCGGGAAAAGCAACGGCTGTACAGCAAGGGCGCACTGCCGAGCAATGTGTCGCTGAAGCTGCGCGGTAAGGATGAGTCGGTGCGGAAGCGGTTGCAGGAAGCGGTTGGTGACTGTGTGGCGGGCAGGATGTCACTGTCCGAGGCAGCCCGGACGTACGGCCTACCGAAGACGTCCATCTGGCGCAGGGTACGATCGCTACAGACCAGTGGCTGCAGTAGTAGCGGAATGAAGGAGGATAATTCTGCAAGCGACGCAATGGCAGAGCGACCGAATCAATCGGAAGAGGCTGAggtggaggtggaggaggaggaggaggaggatgatgatgctaaGCTAACGATGGGGGGCATCCTGTTAAGGGGGAGTGATACGCTTCAGGTTGGGGCAGGATATATGTCCGATGAGAATATTTCGGCGAGCGATTTAGCGCAATTAAGGTATCAGCTGACCTCGAACTATGACGATCACGTATTGCATGATAGTTTATAA
- Protein Sequence
- MAQSSSGPTKTMLVWLDYSRHMLSTLQDIYADQQYTDCRLVVPDGELYANRPILSMASGLFEAIFTSMVTLTMDPSTVLIPDMTFANLQRVVQFIYTGRVTLQPDEVVPFMEACGLLQLRGVECCGNRTMGIYIDESGPEATAEDGDPFATAPETDPLHIDHTRYPGAVEKAEPPPLKLIEPNLESTSELFPGNICKEELMVSDEDSAEEEEEEEGDKSDAGEDSSMDDSTDSEQDVERWMALVKEVGVVDTSHPGAPNFTPYQNCLKQAIVAVISGNVSPRRAAARYNVPASRLVRWTQKVKRAMKKKPETVTANVSQMVAAYIDRSIQEFKQLLETSDADERVSLLSDPSNVLMYDVRIMLAIHDIMYTGISLREAVTRYKNSLGLLRNRLYNLKSQRITNHFKSFGIRLKSADKQTNERQAAGKKRRRFETESGKILKTADPSRYEESVAKALEAIGYGLSIQQAANHFRIHKSALWRHAKAKNITFPQERTVLRKKAATKKVKPSGGGSSAASSSATNSCPVVPKLVPFGSTGAVTTAERVRDRAGGGEIALAPASTAAPPIAAPSLLPLPKLVPISSSSLPEYEERMEAAIAMISNQKMSYREASVKYNIPKATLWKKISKMEPKKSTANCARLWFLSKKRIMSCTFSQQMANSSCLTWLNFREHMLNTFCGIYRTQQHTDCRLIVPDGELYANRPILCMASSFLETILDGLPTIGADMVTIVIPDLTLATLRAVLQFIYTGEASVRSDEMASFVEACSFLQLRGVRFIANQIVGIRFGKTVGMVSEELIPASEGLEATACPRQELFVAQVEEQAEEDEEEEEQTEMPITQSQVQPVECFIPESSESVQEHVEGNEIVQVVLNIPSDATPACERETSQCVEIPQERLTQAIEAIIKDHESYEITSVPCAIDTTVPTSSETHTTNLPPFEDELEQANPEPTLSDPASYDARLALAMDAILHHGISYRIAARQYSIAKTVLWRKAMKMPRPVRVGSPKLSAQRREAIDALKTGEKLAHVSRRFEIPLSTLHREKQRLYSKGALPSNVSLKLRGKDESVRKRLQEAVGDCVAGRMSLSEAARTYGLPKTSIWRRVRSLQTSGCSSSGMKEDNSASDAMAERPNQSEEAEVEVEEEEEEDDDAKLTMGGILLRGSDTLQVGAGYMSDENISASDLAQLRYQLTSNYDDHVLHDSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00093522;
- 90% Identity
- iTF_00093522;
- 80% Identity
- iTF_00093522;