Basic Information

Gene Symbol
nfxl1
Assembly
GCA_002846955.1
Location
NJHH01002080.1:17140-20421[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.59 3.7e+03 -2.4 0.6 15 18 173 176 172 177 0.81
2 18 0.92 5.8e+03 -3.0 1.4 14 19 224 229 224 229 0.86
3 18 0.074 4.6e+02 0.5 0.3 4 10 260 266 259 268 0.94
4 18 2.2e-06 0.014 14.9 20.6 1 19 274 291 274 291 0.98
5 18 2.3e-07 0.0014 18.1 15.0 1 19 327 346 327 346 0.97
6 18 0.76 4.7e+03 -2.8 1.9 6 10 371 375 370 375 0.90
7 18 2.4e-07 0.0015 18.0 12.8 1 19 381 399 381 399 0.98
8 18 2 1.2e+04 -4.3 0.7 5 10 423 428 423 429 0.62
9 18 4.6e-08 0.00029 20.3 12.0 1 18 434 451 434 452 0.97
10 18 2 1.2e+04 -5.1 2.3 5 10 475 480 475 480 0.91
11 18 6.1e-06 0.038 13.5 16.5 1 18 486 503 486 504 0.97
12 18 3.3e-07 0.002 17.6 17.1 1 18 513 530 513 531 0.97
13 18 0.0037 23 4.6 12.0 9 18 577 586 570 587 0.89
14 18 0.12 7.2e+02 -0.2 5.2 3 12 600 609 590 609 0.85
15 18 0.0006 3.7 7.2 5.7 1 12 680 691 680 691 0.97
16 18 1 6.5e+03 -3.2 1.1 15 18 704 707 703 708 0.85
17 18 0.0056 35 4.0 13.8 4 18 721 735 719 736 0.93
18 18 2.9e-07 0.0018 17.7 11.6 1 16 788 802 788 807 0.94

Sequence Information

Coding Sequence
ATGGCTTATCGGGATCGGAAACTAGCGGCACCGAAAGTGCCGAACGCGTGGCGtttgccaacgccaccacctcAACCAGCCACCGGGCAGCGGAAACCGGGAACGAGCAACGCACGGAACACCGAGGATCGCATGGCCGGTTCGAAGATACCGCAACCGAAGACACCATCATCCTCTacggcagcaacgacgacgaccgcggcCATGAAGAAGAGTGCACAGGAAAAGTTCAACCAAGTCCAGCGGCAACACGTGGAAAAGGCACGCCAGTATGCAACCGAGTACGTATcgagcgaggaggaggacgatgatgcaGCGAACGGCCAGCGAGACGGTGCCGCCCGGAACGACGGATCCGCTACACAGAACATTCTCGGCTCGGTGCTCAAGAACTACAACGGCGCGCCCTCGGATATGGGCAAAACGCAGGAATATTTGCAGAATTTGCTCGAATCACGCAACGCCGTTTGTCTAATCTGCATCGGAACGGTAAAACGGGCGGACAAGATATGGTCCTGCCAATCGTGCTACACCTTTTTCCATCTGCTGTGCATCCAGCGGTGGGCCAACGATCGCATCTCGATGAAACGCATGCACcacgaggagcaggagggtTACTACAACAATCGGGGCGAGTACATCCCAAAGCCGGTTCTCTCCGTGCACTGGGATTGTCCAAAGTGTCGTCACGAGTACGAACCAGTGGACATACCACGACACTACGAGTGTTTCTGTGGAAAAGAGCAAGATCCAGCACAACATCCGTGGCTGATACCGCATTCGTGTGGTGAACCGTGCGGTAAGCAGCTGAAACCGGCCTGTGGTCATCACTGCCGGTTACTGTGTCACCCGGGACCATGTCCACCGTGTCCGCAGACGGTCAGTGTGTCGTGTCGGTGCGCGAAATCGGCTCCGAAAACGATTCGCTGTTCACAGGGCTCTTGGACCTGCACGGTAAAGTGCACCCGGAAGCTGGACTGCGGAATACACGAGTGCACGGAACGGTGCCACCCAACCGGTGAGTGTCCACCGTGCCGGAATCGTAGCAAACAACCGTGTCTCTGTGGAGCCGAGAGCAAGGAAGTGAACTGTTTCGAGTCTCGGTGGCAGTGTGAGAAAGTTTGCAACCGACCGTACTCCTGTTCGCTGCACAAGTGTGAGCTGCGGTGTCACGCTGGTCCTTGTGGGGAGTGTCCACTCGGGAAGCCACGATCGTGTCCCTGCGGTCGAACCCAAACACGAGCCGCCTGCTCGGAACGGATTGGTACCTGTGGCGATACGTGCCAAAAGATGCTGGCTTGCGGTGTGCACCAGTGCATGGAACGATGCCACGAGGGAGAGTGCGGTAGCTGTCTCGTGCTGGTACAGAAAACGTGCCGCTGTGGTCAGACGAACAGGGAGATACCGTGCTCGAAGGAAGCGACTTGCGAAACGAAGTGTAAAAAGGTGCGCCGTTGTGGTCGGCATCCCTGCAACCGCAAGTGCTGCGATGGCCAGTGTCCGGATTGCGATAAAGTTTGTGGCAAAACGCTCTCGTGCGGACGGCACAAGTGTTCCTCTTGCTGCCATCAGGGTGCGTGCTATCCGTGCAATCAAAAGTCCAGCGTCAAGTGTCGATGCGGTGGAACGTCCACGGAGGTAGCGTGTGGTCGGGAGAAGAAAGCACATGCCCCCAAGTGCACACTGCCCTGCCGTCAGCCCGCCAAGTGTCACCATCAGAATCCACATGCGTGCCACGCCGGCGAATGCCCACCGTGTGTACAGCCGTGCGGTGAACCGAACGACACGACCAACTGCGAGCATCCGTGTGCGGTCAAGTGCCACGATGCGGTTACGGTGGTAACGAAGGATAAACACTTCAAACCCGTCGGACCGTGGGATGTACCGCGGGAGATCGTGGAAGTGAAGCGTCTGCCACATCCGGTTTGCGAAGTGAAGGTACCGGTCATGTGCCTAGGTGGTCATGAAACGTCCGAGTGGCCCTGTCACAACTCAAAGCCAGCTTCCTGCGGAAGACCGTGTGGGCGCCTGCTGAAGTGCGGGCTACACCGGTGTCCCCTGCAGTGTCATAAGGTAACGCATCGGGCCAGCACAACGCAAGACTCACGCTGTGAACCGTGTGCCGCCGGATGTGTTGTTCCACGGCCGGCGGGTTGCGTACATCCGTGTAAGCGCCGTTGTCATCAGAACCCCTGCGAACCGTGCATGGTTTCGATCAAGGACAAGTGCTACTGTGGACTGACGCAGGTTTTTTACACGTGCAATGACATCTACCTTCCCGTGGAGGGAGCAACGGAAGAGCTGCGTGAACGGCGTAATGCCGTGCTGAGTTGTGGCCAGAAGTGTATCAAAAATCTTGCATGTGGCCATCGATGCTCATCCGTCTGCCATCCGGGAGCCTGCCCGAATCCGGAGTTTTGtacgaagaaggtgaaagTAACGTGCGCCTGTAATCATCGCAAGGCAGAACTCCCGTGCAATGTGGCGAAGGAGAGCGGTACACTCGAGTGTGATGATGCATGCGAAGCCATCCGTGTCCAGCGGCAACAGGAAGAGCAGGCCAAAGAGGAGGAGCGTCGGGCTCAGGAGGAGCTAGCCAACCAAAGGGAACTGGAGGAGTACGAGCGGAAGTTCAATCGCCGAAAGCACCGGGAACGCAAGCGCCACGAGGTGAAGGAGCAGGAAAGTCGCAATCTTATGCTTTACATTTTGCCCGCGATTATCGTGCTGGTAGGAGTTATTCTATATTTTGTGTTACTGCAATGA
Protein Sequence
MAYRDRKLAAPKVPNAWRLPTPPPQPATGQRKPGTSNARNTEDRMAGSKIPQPKTPSSSTAATTTTAAMKKSAQEKFNQVQRQHVEKARQYATEYVSSEEEDDDAANGQRDGAARNDGSATQNILGSVLKNYNGAPSDMGKTQEYLQNLLESRNAVCLICIGTVKRADKIWSCQSCYTFFHLLCIQRWANDRISMKRMHHEEQEGYYNNRGEYIPKPVLSVHWDCPKCRHEYEPVDIPRHYECFCGKEQDPAQHPWLIPHSCGEPCGKQLKPACGHHCRLLCHPGPCPPCPQTVSVSCRCAKSAPKTIRCSQGSWTCTVKCTRKLDCGIHECTERCHPTGECPPCRNRSKQPCLCGAESKEVNCFESRWQCEKVCNRPYSCSLHKCELRCHAGPCGECPLGKPRSCPCGRTQTRAACSERIGTCGDTCQKMLACGVHQCMERCHEGECGSCLVLVQKTCRCGQTNREIPCSKEATCETKCKKVRRCGRHPCNRKCCDGQCPDCDKVCGKTLSCGRHKCSSCCHQGACYPCNQKSSVKCRCGGTSTEVACGREKKAHAPKCTLPCRQPAKCHHQNPHACHAGECPPCVQPCGEPNDTTNCEHPCAVKCHDAVTVVTKDKHFKPVGPWDVPREIVEVKRLPHPVCEVKVPVMCLGGHETSEWPCHNSKPASCGRPCGRLLKCGLHRCPLQCHKVTHRASTTQDSRCEPCAAGCVVPRPAGCVHPCKRRCHQNPCEPCMVSIKDKCYCGLTQVFYTCNDIYLPVEGATEELRERRNAVLSCGQKCIKNLACGHRCSSVCHPGACPNPEFCTKKVKVTCACNHRKAELPCNVAKESGTLECDDACEAIRVQRQQEEQAKEEERRAQEELANQRELEEYERKFNRRKHRERKRHEVKEQESRNLMLYILPAIIVLVGVILYFVLLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00092547;
90% Identity
iTF_00092547;
80% Identity
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