Aaqu004259.1
Basic Information
- Insect
- Anopheles aquasalis
- Gene Symbol
- -
- Assembly
- GCA_002846955.1
- Location
- NJHH01000716.1:74513-77680[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.5 1.6e+02 2.6 1.6 2 23 253 275 252 275 0.89 2 14 0.001 0.064 13.3 0.3 2 21 285 304 284 305 0.95 3 14 0.069 4.3 7.5 3.0 2 21 313 332 312 333 0.92 4 14 0.78 49 4.2 2.2 2 23 452 473 452 474 0.92 5 14 1.5 93 3.3 0.0 2 20 485 503 485 504 0.93 6 14 0.00026 0.016 15.1 1.5 1 21 512 532 512 537 0.94 7 14 0.36 23 5.2 0.4 2 23 615 637 615 637 0.93 8 14 0.15 9.1 6.5 0.6 1 20 652 671 652 673 0.94 9 14 0.0039 0.25 11.4 0.6 3 21 684 702 682 707 0.94 10 14 0.78 49 4.2 2.5 2 23 780 804 779 804 0.85 11 14 0.2 12 6.1 3.2 1 20 820 839 820 841 0.94 12 14 0.076 4.8 7.4 0.3 1 17 848 864 848 865 0.90 13 14 0.029 1.8 8.7 4.1 5 23 865 884 864 884 0.94 14 14 3.7e-05 0.0023 17.8 1.4 1 23 890 912 890 912 0.98
Sequence Information
- Coding Sequence
- ATGAAGCGTGCTCCGAAACGCCGGGAAATGGCCATTACGGACCAgcgaatgaaaccgaaatccAGTGgtatcgtttgctgctgcctgtgcttGAAGCCGTACCGCGTCTCGGCGCTCAACAAACTGAACTCGGCTGCTCCCGACGAACCGTCTCTGACCATCGGAAGCGTCGTCGAGAAGGTCGCCTCGGTTAAGATCAAAAGTAGCGATGAAAGCATCTGCGATCCGTGCTGGCATCAGATCAAGAGCGCGTACGAGATACAACGCAGAATCCGTGTCTCCAATCGGCTGGTCATGGAGCAAGGAGCACAGGAAGCGATCCCGACCGACGAAACCCCCAACGACGAGTCCGACGCATCGAATTTCGAGGAACTGGAAGAGATTCTGCTGACAGGCGATCCGGAAATTGACGGAGAGTATTTGGATCAGAGTGCCGTATCGAACGATCATAACTACGATGGCCAAAAGCCGGATGAAGAGGGTATCCTGATATTAGACGATACCTTCGTAGatggagaagaggaagagagcgaaatgaaggaggaggagcatgaggaggaggaagacgtGTTGAAAATGACGGAAATGACGCTACATCTGGAAGCAGACATCATTGTAGGAGatgaggaaaagaagaaaagcaaccCACTCGAAACGATGGGCAACTCGATGCGCCAGTTCAAAATGCCGTCCAAGGCCCTTATAGTGAGTGATGAGACGTTCGACAACTaccgccagctgctggtgtccGGGAAACGGTGCTGTGGATGTAGCTTCGTCGCGGCGAACCGCCGCGAACTGTTGCGGCATTCCGAGCAGTATCACTCTCGCACCATCACCGATGTCGGGGACTACTGTCCCATGTGTTTCTTCAAGTTTGCCAACGATAAGCAGCTCGAGCGCCACATGCGAGATTTTGAATCCTGCTTGATGCtagtgtgtttgcgttgcaaTTGCTTCTACAACAGTCGGTCCCATCTGTACAAGCATCTGTTGATGTGTGGCGAAAAAGCGACACAGGAAGCACCGGTGCCTGATTCAACGGACGAAAGCGAAGACGAACCGGAGAACGAGCGCGAGGAGAATGAAGCGGACGaaaggaatggtggtggtggtgctgatgctgatgctggtgatccAAGCGACACGATCGAGTACTACCTGCTGGAAGAAACGCCAACCCGTGGAAGTGACCTGCGGAAGATGTATCGATATCGTGCCAAAATTGCTGACCTGCTCACCGATGTTAATCTATCGTATCCCGGTGGCCAGGAAGAGCTCAACATCCAGGAGAGTCAAGTACACCAGCGAGAAGTGTTTGATACGTTCGAGTACGTGTATCTGCGCGGAGAGCGATGCTGCGGCTGTTCGTATACGGCCGTGTCGGCCGATCATCTAATGGAGCACGGTATCCTCCACCATAATGCGGCTACGGGCGCAATCGACAACCGCACCTGTGGTTTGTGTAACGCCGGGTTCAACAGTGTGCTGGAGCTCTTgaaacattacattttcaatGTCTGTAAACAGCTGTTCTTCTGTACCATCTGCCAGGTGTGCTTCGTTTCCCTCGATAGCCTTCAGAACCATCAGCGCGGCAGCGAAACGCACCGCCAGATCGCCAAGTACGAGCAGGCCGGTTTAGTGGATCACGGCACGGATGAGTCAAGTCTGTTCGTCGAGTTGGAGCGACCGGGGGTGATGGATCGATTGCAGAAGGTGCTAGCTCAGAGAATGATTTACCGCACTACCCCAATGCGAGGCTTACTCATCCCGGATGCAAAGTTTATTGTACAGGAGATAGAGTACAACACTTACCGTAAGCTAAAAATGACCGGTGAACGGTGCTGCGCCTGTGGACGGTTtttcgaaacgatcgaggaGATGCTTGAACATGCACGATTGGCACACTTTCGACCGATCGTCAATGTGGCCTCATTCTgggacggtggccaccagtgcaACTACTGTCTGTCTCAGTTCGAAAGCAAACGAGGGCTCCAGATGCACTGGGCGTATCGGCGGAAGGGCAACATCACTCTGTATGGCTGCAAATTGTGCGGCCTAGTGTATTCCCGAATGTTTTGCCTTGCCCGGCACATGCAGCTGGCCCCGAATCATTTGTCGAAACTAATACACGAGGCATCGCAAGACGacgcggagcagcagctcgtaaaGCAGGAGCTGTCGACGGACGACGATGCGAGTGATGATGCGGCCGGTAGTAGTGGAGCGAAAAAGCgtaaaaggaagcaaaaacaagatCCGCGCGTCGCCGAAGCACTCGAGCTGCATCCCTCGATCAAGACGGGAAAAGTGGGACACCAAATCGGTTATCATTGCTGCTTTGCCAAGTGTAAGCAATCGTTCCAGGAAGAGGACGAGCTGCTTCTGCACACCATGGCCGAGCACGAGGGCAAACGGAAAGAGTACGAAAGCGAGCGGACGTCCTCGAAGCACGTGTGCCCCACGTGCTGCAAATCGTACGACACGCAGACCAAGTTAAACTGGCACCGGTTCCAGCGTTTCGTGCCGCGTCAGTACAACTGCAAGCACTGCGATCTACAGTTTGCCAAGTGGCCACTGCTACAGCATTGCGATCGCTCCTTCAGCCACCACAGTGATCGCAAGCGGCACGAAATGTCGGCCCATACCGGAGTACGGCCGCACCAGTGCACGATCTGTTCCGCTTCTTACATCCGAAACCGTGATCTTGTGCTGCACATGCGAAAACATTCGATGCATGGGGAGACAAGCGAACCAAAGGAAGAACTGATGGAACAATAA
- Protein Sequence
- MKRAPKRREMAITDQRMKPKSSGIVCCCLCLKPYRVSALNKLNSAAPDEPSLTIGSVVEKVASVKIKSSDESICDPCWHQIKSAYEIQRRIRVSNRLVMEQGAQEAIPTDETPNDESDASNFEELEEILLTGDPEIDGEYLDQSAVSNDHNYDGQKPDEEGILILDDTFVDGEEEESEMKEEEHEEEEDVLKMTEMTLHLEADIIVGDEEKKKSNPLETMGNSMRQFKMPSKALIVSDETFDNYRQLLVSGKRCCGCSFVAANRRELLRHSEQYHSRTITDVGDYCPMCFFKFANDKQLERHMRDFESCLMLVCLRCNCFYNSRSHLYKHLLMCGEKATQEAPVPDSTDESEDEPENEREENEADERNGGGGADADAGDPSDTIEYYLLEETPTRGSDLRKMYRYRAKIADLLTDVNLSYPGGQEELNIQESQVHQREVFDTFEYVYLRGERCCGCSYTAVSADHLMEHGILHHNAATGAIDNRTCGLCNAGFNSVLELLKHYIFNVCKQLFFCTICQVCFVSLDSLQNHQRGSETHRQIAKYEQAGLVDHGTDESSLFVELERPGVMDRLQKVLAQRMIYRTTPMRGLLIPDAKFIVQEIEYNTYRKLKMTGERCCACGRFFETIEEMLEHARLAHFRPIVNVASFWDGGHQCNYCLSQFESKRGLQMHWAYRRKGNITLYGCKLCGLVYSRMFCLARHMQLAPNHLSKLIHEASQDDAEQQLVKQELSTDDDASDDAAGSSGAKKRKRKQKQDPRVAEALELHPSIKTGKVGHQIGYHCCFAKCKQSFQEEDELLLHTMAEHEGKRKEYESERTSSKHVCPTCCKSYDTQTKLNWHRFQRFVPRQYNCKHCDLQFAKWPLLQHCDRSFSHHSDRKRHEMSAHTGVRPHQCTICSASYIRNRDLVLHMRKHSMHGETSEPKEELMEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -