Aaqu007921.1
Basic Information
- Insect
- Anopheles aquasalis
- Gene Symbol
- -
- Assembly
- GCA_002846955.1
- Location
- NJHH01004974.1:7245-9106[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.8 2.4e+02 2.0 0.2 2 23 210 231 209 231 0.89 2 10 0.32 20 5.4 0.7 2 21 269 288 268 291 0.77 3 10 8.1e-05 0.0051 16.7 3.4 1 23 297 319 297 319 0.97 4 10 0.0035 0.22 11.6 1.9 1 23 327 349 327 349 0.97 5 10 0.00065 0.041 13.9 2.8 1 23 355 377 355 377 0.98 6 10 0.00017 0.011 15.7 1.6 1 23 385 407 385 407 0.97 7 10 0.00095 0.059 13.4 1.5 3 23 463 484 461 484 0.97 8 10 0.0011 0.068 13.2 0.2 1 23 490 512 490 512 0.95 9 10 7.5e-07 4.7e-05 23.1 1.0 2 23 519 540 518 540 0.98 10 10 0.012 0.73 9.9 1.6 3 21 548 566 547 568 0.94
Sequence Information
- Coding Sequence
- ATGACTTACTACTTGTGTCGGCTTTGTTGCAGCTGGACGGAGACGGGGCTCTTGTGCGAAAGGACAACCACTTACGCGATCGTGGCGCGTGTTTTCGGAATAGAGCTGGCTCAGCTATCGTCGCTTCCCGAATACTGCTGCAAGCAGTGTGCCTCATCGCTGGATGCCTGCCGAGTTTTCTACGAGCGGGTTCAAGCATCGGATGCATTTATACGCAATCTgcacgaaaatgaaaagctggAAGCGTTTCTTAGCAGGCAGGACAGTTGGTGCCCTGAAACCGGCTTCAGCACAACTATTTCGGAAATAAGGCAAGCAGAAAGTGTAGCATGGCAGGATGGCGTGGAAGGAGACTGTTTGGGAAATGTTACACcgatgaaggaaaagttgaTCTCTTTAGACATAATGCCTGTGGAGGAGCTCGAGATCGTGAATGGACCGttgatcgatgcgatgcatgGCGAGGATAGCGAAACGCTGTTCAAAGAAGAAGTGCTTACTGCGGTGCAGGACCTCTCAGGATCGGGCGATGAATGCGAGCCGATCGATGTAGACGACCTAGGACCAGCAAAACCATCGTACCGGGCGCGACACGCGGATCAGGAACTGATCAAGAAAAATCCCCTTATGTGCTACATCTGCGAGGAAGAGCAAACGAGTGTGCCGAGCCTAAGAACGCATCTATTTTCACACGACGATCTGCTGCCATATCACTGCACACAGTGCAGCACACCGGAGCAGCCCATTGATATTCGGACGCTGATTGCTCTGAACAATCATTTCGAATCCCACCAGCTGCCCATCCAGTGCGAACAATGTCCTTTGCGTTTTCGAACCTACGATGCCCGCGTGTTTCACCAGAAGAACAAGCACAACTCGAAGGCACCCTTCGTGTGTGACACCTGTAAGAAGGAATTTGTGAACCATTACAAGTTTCGCAAGCACATGATCGCCCATCGAAACAAGCTAACGCAACGGTACAAGTGCGGCACGTGCGAGAAAGTCTTTCAAAACTTCACGGTCCTCCACCGGCATGAGTTGATACACTCCGATACCAAGCTCTTCAAGTGTCCGTTTTGCGCACGTTTGTTTAACCATCAGTCGAACTTTGAGGTACACAAGGCGCGCCACCAGCGCAATCAGTTGAAGCTGTACCCGTGCGATGTGTGCGACGAGCGGTACACCAAGTTCGACGAATGGAAGCGCCACATGCATCAACACTTTCCACAGGATCGTCGTTACTGGTCGAAGGAGCTAGCCCTGTCGAAGGAGTTGCAGGATCAGGCCAACTATCCGGCATCCTGCCAGGAACCAGGCTGCTCGTACGTGGCCGCAACGATCGTCAAAATGTGGAGCCACTATCAATCGCACTACAAATCGTTCGGTTGTACCCAGTGTGGGCAAAATTTTGCCAAAATGCACAAGCTGCGCACCCACATCGAAACGGTACACGAGCAGATCCGGAAGCACGAGTGTACCATCTGTGGGCGGCTCTTTGCTGTTGCACAGAAGCTGCGCGAGCACCTCGATTGGCACAATGGAATCCGTAGCAAGCAGTGCAAATACTGCCCGAAGACTTTCATTTTTTCATCGAATTTGGTCATCCACGAGCGTACTCACACTGGACATAAGCCTCATGGCTGCGATCAATGCGATGCCCGTTTTTCTTCCAGCGCTGGACtggcgaaacataaaaagtgTCATGATCCGAAGGACCCTCCCAAGCAAAAGCTAATCGAACAAGGACATTCTGGCCATGTCTAG
- Protein Sequence
- MTYYLCRLCCSWTETGLLCERTTTYAIVARVFGIELAQLSSLPEYCCKQCASSLDACRVFYERVQASDAFIRNLHENEKLEAFLSRQDSWCPETGFSTTISEIRQAESVAWQDGVEGDCLGNVTPMKEKLISLDIMPVEELEIVNGPLIDAMHGEDSETLFKEEVLTAVQDLSGSGDECEPIDVDDLGPAKPSYRARHADQELIKKNPLMCYICEEEQTSVPSLRTHLFSHDDLLPYHCTQCSTPEQPIDIRTLIALNNHFESHQLPIQCEQCPLRFRTYDARVFHQKNKHNSKAPFVCDTCKKEFVNHYKFRKHMIAHRNKLTQRYKCGTCEKVFQNFTVLHRHELIHSDTKLFKCPFCARLFNHQSNFEVHKARHQRNQLKLYPCDVCDERYTKFDEWKRHMHQHFPQDRRYWSKELALSKELQDQANYPASCQEPGCSYVAATIVKMWSHYQSHYKSFGCTQCGQNFAKMHKLRTHIETVHEQIRKHECTICGRLFAVAQKLREHLDWHNGIRSKQCKYCPKTFIFSSNLVIHERTHTGHKPHGCDQCDARFSSSAGLAKHKKCHDPKDPPKQKLIEQGHSGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00092391;
- 90% Identity
- -
- 80% Identity
- -