Aaqu007332.1
Basic Information
- Insect
- Anopheles aquasalis
- Gene Symbol
- Bcl11b
- Assembly
- GCA_002846955.1
- Location
- NJHH01004376.1:105992-109125[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.023 1.5 9.0 2.4 1 23 190 212 190 213 0.95 2 14 4.1 2.6e+02 1.9 7.2 3 23 377 397 376 397 0.90 3 14 0.0021 0.13 12.3 0.9 1 21 416 436 416 437 0.85 4 14 6.2 3.9e+02 1.3 5.9 2 23 493 515 492 515 0.96 5 14 0.0011 0.07 13.1 0.1 1 20 532 551 532 553 0.94 6 14 3.7 2.3e+02 2.0 0.6 1 19 568 586 568 592 0.80 7 14 0.99 62 3.9 0.0 1 20 661 680 661 682 0.95 8 14 1.6 98 3.2 0.3 2 23 689 710 688 710 0.94 9 14 0.00045 0.028 14.4 6.0 1 21 716 736 716 738 0.95 10 14 2.1e-05 0.0013 18.6 1.5 1 23 743 766 743 766 0.96 11 14 7.7e-07 4.8e-05 23.1 0.6 1 23 771 793 771 793 0.99 12 14 2 1.2e+02 2.9 0.3 1 23 799 824 799 824 0.91 13 14 3.9e-05 0.0025 17.7 0.7 1 23 830 852 830 852 0.97 14 14 3.4e-05 0.0021 17.9 0.2 1 20 858 877 858 879 0.94
Sequence Information
- Coding Sequence
- ATGCGGGTCGTTAAACTCTGCCGTATCTGCAGCAAACCGGACAacgatgatttcatttcagtGCGGCTGCGGCAGGAGCAGGTCACGATCGCCGAGAAAATCTTCGCGATCTCGGGCGTGGAGGTGATGAAAGATCGGCGGCTGCCTCAAAACATCTGCCTCAAATGCCTCGATCGTGTGAACGAAGCGTTTGAGTTGAGGCAACAATGCATCGAAACGGATTCTCACTGGTGCGAATCACTCCCCGACATGAACAAACTGCTGCTAACCGGAAGCCCACAACACTGCGGATCCGAATCTTCGGATTACTTTGTCGAATTCCTGGAAGAACCGACTGGCGAGAGGGTGGATAcagaagaagacgacgaggacggtgaTCCCGGCGAGCAAGATCCCCACCAAGATGTCCTTGAGCAGCAGAGTGACTCGATCTCGGAGCATGGAAGTATCACTGAGGAAAGCTCATGCCAAACAACGCAGGTGGTTCCGAATCAGGCGCATACCATTCAACAAAATACTGCCTGGAGGCTAGATTTTGACCGACAATACCCGGCAAATGGTGACCTTTACCAGTGTCTCACCTGTAACCAGACACTCAAAACATACGTAGCGCTGATTGAACAtttggagcatcatcatcgatcgtacgGCAAGGATCCTTGCCACGAGAAGTCACATGCTGTGGAGTTTGTACCAAATCATCcaaaatcatcaacaacatcctcGGACGGGAGTGATCTTTGCATAGAGATACAAACACTTCCCAACGATGAACAAATGGAAGAGGATGGTGAAGAGATGGAAATCATCGACCGGTCGGTAACGACCGAAACACTGGACGAGGAATATGTCACAGACGCAGAATATTTGGAAGTGGATGATGGGAGTGGAAACGAGGAATATGAAGCATTCCAAGACGAGGTGGAGGACGGCAGTGAAGTTGATTacggggatgatgatggcagagCTTTGGTAGGGGAATCGTACCGATCTCAAACATCGAAAGCAGGGCGTATGAAGAGCAAAGAGCAAAGTGCCTTGCAGCGTGTGTTACAAATACCGGAAGAGTATCGCCGAGTTGTAGCTAATCAGGAGACGTACATGATCGTTGAGCTAATGCAtgagcgatgctgctgctgtgcaaaGTTCTTTGCCACTGATCAACATCTGCAGGAGCACATGAAGCAACACCAGGAGGAACATTCACGCATTAACGCGTCTCGAAAACAGGAAGCAGCTTGGAAGTACAGTTGCGAGTATTGCgggaaaacatttaaatttgCTATCACATACACTTTTCACTTGCGCATACGGCAGCGGCGTCAATTTTATCTGTGTGGACTCTGTAATCTTGTTATGGACACAGAGAAGCGCATGAAATCACACATGCTCCGCAGTGAGCAGCATGCCAGCTTCTTCAATTTACCTCGTGCCGACGTTAGTGACCAGTACTTTATAGTTGTGCTCGCCGGCGTTCGTTGCTGTAGGTGCAGAACTTACTTCGAGAGGCATGTAGACTTCAATGAGCACTTTCAAACAAATCATAGccaacagctgctggcagAAAGCCGGCACACGCTGGACACCCATCCGTTCGAATGCGGTGTATGCAAGCGACGCTTCACTCGAAAGGCCCTGATCGAGCAGCATTTGACCGTAGGGACGATTGAAACAGAGGAAAACACCCGCAATTTCGTCAAGTACTGCTGCAAGTTGTGTGACTATATGACTTATACTATTGAACGCATCGAGGCCCACCTGTACGGTGCCGTTCACAGTGATGTGCTGGCAAAGGTGCACCTTGAGCCATTGAACAATGAATTCAAAAAGCCAGACACGATGTGCTACTGCTGTATGCCAGAGTGCAAAAAATCATTCTTAGACACAGAAATCTTACAGGCTCACTTTCGTGACTGTCACGCGGAAACTCTTGCCGCAAACCAACGTGCCAACAGCATGCAGAAAATTGAACAGGGATCGTACGAGTGTTTTATATGTGCGTTGAGATTGGAGAATTTAAATGCCCTAAAGGACCATCAGGCGCTGCGTTCCCCCAGCAACTGCATCTGTGCGATATGCGGTATCAAGAAACCCTCTCGATCGGCGATGCTAGATCACGAGCGATCACACACCGGCGAACGACCGTATCGTTGCGAGTTGTGCGATAAAACTTTCGCTAGCTTGAGCTGCCTGCGATCACACCAGAAATGCCACGTTCCACGGGAATACGAGTGCAGCACGTGCAATGAGCAATTTGCGAGACTTGAAAATCTCAAACGCCACTTTCGGCTTAAGCATGGCGAGGCGACGTTCAAGTGTGAGATTTGTGCCAAGATGTTCAAGACACGCGACAAGCTCTCCGCTCACATTCGGATCCATACGGGCGAGAAACCGTACAAATGCCGGACGGAGGGCTGCGATCGCTGGTACACGAACACTGCGGACCGAAGGCGTCATGAGATGGCCGGGCATACACTGGAACGTCCCCATCCATGTAGATATTGCGGGGCAGCTTTCGTTCGCAAACGACAACTGGTGATCCACGAACGTCGCCATACCGGCGATCGACCATATTCCTGCGAAAAGTGTGGGAAGACATTTGTTGAAGCGACAGCCTTGCGAAAGCATACCGATAAAGTGTGCTCTTTTTAA
- Protein Sequence
- MRVVKLCRICSKPDNDDFISVRLRQEQVTIAEKIFAISGVEVMKDRRLPQNICLKCLDRVNEAFELRQQCIETDSHWCESLPDMNKLLLTGSPQHCGSESSDYFVEFLEEPTGERVDTEEDDEDGDPGEQDPHQDVLEQQSDSISEHGSITEESSCQTTQVVPNQAHTIQQNTAWRLDFDRQYPANGDLYQCLTCNQTLKTYVALIEHLEHHHRSYGKDPCHEKSHAVEFVPNHPKSSTTSSDGSDLCIEIQTLPNDEQMEEDGEEMEIIDRSVTTETLDEEYVTDAEYLEVDDGSGNEEYEAFQDEVEDGSEVDYGDDDGRALVGESYRSQTSKAGRMKSKEQSALQRVLQIPEEYRRVVANQETYMIVELMHERCCCCAKFFATDQHLQEHMKQHQEEHSRINASRKQEAAWKYSCEYCGKTFKFAITYTFHLRIRQRRQFYLCGLCNLVMDTEKRMKSHMLRSEQHASFFNLPRADVSDQYFIVVLAGVRCCRCRTYFERHVDFNEHFQTNHSQQLLAESRHTLDTHPFECGVCKRRFTRKALIEQHLTVGTIETEENTRNFVKYCCKLCDYMTYTIERIEAHLYGAVHSDVLAKVHLEPLNNEFKKPDTMCYCCMPECKKSFLDTEILQAHFRDCHAETLAANQRANSMQKIEQGSYECFICALRLENLNALKDHQALRSPSNCICAICGIKKPSRSAMLDHERSHTGERPYRCELCDKTFASLSCLRSHQKCHVPREYECSTCNEQFARLENLKRHFRLKHGEATFKCEICAKMFKTRDKLSAHIRIHTGEKPYKCRTEGCDRWYTNTADRRRHEMAGHTLERPHPCRYCGAAFVRKRQLVIHERRHTGDRPYSCEKCGKTFVEATALRKHTDKVCSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -