Aaqu007331.1
Basic Information
- Insect
- Anopheles aquasalis
- Gene Symbol
- -
- Assembly
- GCA_002846955.1
- Location
- NJHH01004376.1:116663-119512[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.1e-05 0.0057 16.5 2.5 1 23 222 244 222 244 0.98 2 15 0.0018 0.12 12.4 3.3 1 23 253 275 253 275 0.96 3 15 3.4e-06 0.00021 21.1 0.2 1 23 284 306 284 306 0.98 4 15 5.5e-06 0.00034 20.4 4.1 1 23 312 334 312 334 0.98 5 15 0.0037 0.23 11.5 0.1 2 23 342 363 341 363 0.97 6 15 0.00017 0.011 15.7 3.2 1 23 369 392 369 392 0.93 7 15 0.0026 0.16 12.0 5.9 1 21 398 418 398 419 0.94 8 15 0.74 47 4.2 1.9 3 23 427 448 425 448 0.81 9 15 2.4e-05 0.0015 18.4 0.3 1 23 478 500 478 500 0.97 10 15 3.1e-05 0.0019 18.0 0.3 1 23 511 533 511 533 0.94 11 15 2.9e-05 0.0018 18.1 2.9 1 23 558 580 558 580 0.99 12 15 0.25 16 5.7 1.6 2 23 615 636 614 636 0.92 13 15 0.0012 0.075 13.0 3.1 1 23 642 664 642 664 0.98 14 15 2e-08 1.3e-06 28.1 3.1 1 23 672 694 672 694 0.99 15 15 0.00087 0.054 13.5 1.3 1 23 700 723 700 723 0.96
Sequence Information
- Coding Sequence
- ATGGATTACACGTACGACAATAAACCCTATTCCGGCGTAGCACAGGCGCCCGAGGGCTCCGgattcttctcttctgttccCAACACGACCACCTTCCTAAAGGTACCGAATCCGCTGATCAAGCAGACGGCGAAGAACGCAGTACCCGCGGCCAGCCACCCCGAGGGAACTGTAACTCCACCCGTGAACTACAGCCAAAACCAGCAGTACGGAGAAGAGAACCATGTTGAAGAGAAATCATCGTTTTTCGTTGGCAGAAAGCAGCTAGAGGTGCAGTTTGTGTCGAGTGCATACGTGCAACAACACCCTCAGCAGTTTGTGCACGGGCCAGTTCATGCTGTGCATTATGCGCATCAGCCTCCACATCTTGCGCAtcaacagctccagcagcacctaGTACCATCTGTGCCATCACACCTGcatcaaccgcaacagcaagTGGTGCCGCAGCAGCTTCAggatcatcatccgcagcTTGTAGCAGGCTACTATGACTATACCACTCATTCGGACACTACTTCCACGGTCGGAAGTCGTCGCTACAATAATCAATCTTCGCCCACCGTGACCGGAGAAGCCGTTACCCAGACATTGACGGTTCCAGTTGTTGCCGGAACCTCTTCCACTCCTGTTGCCACTGCAAGCGCTGCTCAGGCTGCTAGCTTTAGTTGTAACGCATGCTCAAAATCATTTGCCACAAGGCTGAAGCTGACGAAACACCAGAAATCGCACGGCTCGGCAGATACGGAGGAAGTGTTCAAGTGCCGGGTGTGCGAAAAAATATTTCGCAGCAAAAGCACCCTCATATGTCACGAGAAGGTGCACGGGGAGAACGGGGTAGGTAACAACTATTCGTGCGCCGAATGTGGCAAGATGTTTGCCAGCGAGGAGAAGCTGCAGGTGCATTACCGATTGCACACCGGAGAAAAGCCGTACGAGTGTAAGGTGTGTTCGAAGCATTTTAACCACCAGTCCAACCTGATCGTTCACTCGCGTATCCACGAAAAGGTGAAGAAAGCGATTAAATGCGACCGGTGCAGCAAAGTGCTGGATAATGAGGAACGGTTGGCGGTACACATGCGACTGCACACAGGCGAAAAACCATACAAATGTTCCTACTGCGACAAGCGGTTCAATCACAAAAGCACGGCAAGCACTCACGAGAAGGCTGCCCACATAGCGGCCAATTCGTTCCGGTGTGATCGGTGCCATAAGACGTTCAATCAAAAGTGTCAACTGCAGTACCATGAAAAGCTGCAAGAACCAGACACGATCGCCTGTGCGATGTGCGACAAGGTGTTCTGTTACACGGCGAGCCACAAGGAGCACGTGTTTAAGGTGCACAGTACTCGTCAGAAGCGAAATCCGAAGAAGAGTGGGCCATCTGAAACCAGTGCAAAGGGTGACAACAACCGTCAGGGCAGGAACAGGTTCAAATGTACGGTGTGTGATCGCCGGTTTTATTATGCGCGTGCCCTCGAGCTGCACATGGGCGTGCACGATGCATCACTCGATGTCAATGTACTGTACTACTCCTGTAACTACTGTCCCGAAACGTTTACCGATGACGATCTGCTGCGAAAGCACGAGGAGGACCATGAGGCCAACGGTACGACTGATTTCCTGAAGAATTTAAAACATCAAATGGTGGAAGAAACAACGAAAGACGGTTTCCGGTGTCCATTATGCTTTAAAGAATTCGCTGACCAGCAAACGCTTAGGGAACATCATAAGACACACCTTTGCGCGAACCCGGAGTGTAGCAAGTGTGTCGCAGCTAATCAAGCCGAGTTCGATCTCACAATCAGCACGTACGATGCAGCCGAAGACAAGCGTGAAACGGTGTGCAACGTCTGCCACCGAGAGCTGCCCACGTTCGAACAGTATCAGAACCACTTTTACTACCATACATCACGGGTCCCATTCTATTGCTACCAATGCCGGGAGGAATTTAATGATAAGCGCGAACTCTACACCCACACGAAGACACACCTGCCACGTGTTCCCGAGTCGTATACGTGCAAGAACTGCGGCAAGGTGTTCTCAACGAAGGGCAACTTTAAGCGGCATTTAAAATCTCATGAAGCCGTACGAGCATTCGCTTGTGATCGCTGCTATAAGCAGTACGACTACAAAAGTGCTCTGGAAACTCATTTGAAGCGATCACACGGTATCGAACTATAG
- Protein Sequence
- MDYTYDNKPYSGVAQAPEGSGFFSSVPNTTTFLKVPNPLIKQTAKNAVPAASHPEGTVTPPVNYSQNQQYGEENHVEEKSSFFVGRKQLEVQFVSSAYVQQHPQQFVHGPVHAVHYAHQPPHLAHQQLQQHLVPSVPSHLHQPQQQVVPQQLQDHHPQLVAGYYDYTTHSDTTSTVGSRRYNNQSSPTVTGEAVTQTLTVPVVAGTSSTPVATASAAQAASFSCNACSKSFATRLKLTKHQKSHGSADTEEVFKCRVCEKIFRSKSTLICHEKVHGENGVGNNYSCAECGKMFASEEKLQVHYRLHTGEKPYECKVCSKHFNHQSNLIVHSRIHEKVKKAIKCDRCSKVLDNEERLAVHMRLHTGEKPYKCSYCDKRFNHKSTASTHEKAAHIAANSFRCDRCHKTFNQKCQLQYHEKLQEPDTIACAMCDKVFCYTASHKEHVFKVHSTRQKRNPKKSGPSETSAKGDNNRQGRNRFKCTVCDRRFYYARALELHMGVHDASLDVNVLYYSCNYCPETFTDDDLLRKHEEDHEANGTTDFLKNLKHQMVEETTKDGFRCPLCFKEFADQQTLREHHKTHLCANPECSKCVAANQAEFDLTISTYDAAEDKRETVCNVCHRELPTFEQYQNHFYYHTSRVPFYCYQCREEFNDKRELYTHTKTHLPRVPESYTCKNCGKVFSTKGNFKRHLKSHEAVRAFACDRCYKQYDYKSALETHLKRSHGIEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00098518;
- 90% Identity
- -
- 80% Identity
- -