Aali000075.1
Basic Information
- Insect
- Anopheles albimanus
- Gene Symbol
- Rreb1
- Assembly
- GCA_013758885.1
- Location
- NC:10287637-10322702[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0045 0.21 11.5 1.1 2 23 271 292 271 293 0.96 2 11 0.00026 0.012 15.3 0.1 1 23 323 345 323 345 0.97 3 11 0.0022 0.1 12.5 7.8 1 23 351 373 351 373 0.98 4 11 0.14 6.5 6.8 4.9 2 20 627 645 627 646 0.95 5 11 9.4 4.5e+02 1.0 0.4 1 19 692 710 692 712 0.86 6 11 0.013 0.62 10.0 0.1 1 23 984 1006 984 1006 0.97 7 11 6.5e-06 0.00031 20.4 0.3 1 23 1015 1037 1015 1037 0.99 8 11 0.002 0.097 12.5 2.3 1 23 1043 1066 1043 1066 0.97 9 11 0.0012 0.056 13.3 2.1 1 23 1680 1703 1680 1703 0.95 10 11 0.00011 0.0051 16.6 0.3 2 23 2195 2216 2194 2216 0.97 11 11 0.55 26 4.9 5.4 1 23 2222 2245 2222 2245 0.96
Sequence Information
- Coding Sequence
- ATGGATGCTGGCGGCCGGTTACTAGTAGCTGCGGAAGGAGCGGCGGAtacaatcaccaccacgatcaaAACGGAAGTGACAGAGGCAGCGGAACagaagccgcagcagcaaatcgatcaGCACCATCACACTGTAGGCGTAGAGGAGGATGAGGGCGGCGGTGCGAAACCTAACAGACGATCATCCGCTGAtccaattgctgctgctgctgctgctactgctaccgggCGCCCAACCGGCGACGTCGAGCGGCGACGGGAAAGTGGTGAAGGACGTACCAACATCGATCGTCGCGGTAGCAGCGGAAGCAACAGTAGCGGCGCCAGCATtagaagcaacaacaacaccaacaacaatcacagcaaccacagtagtagcagcagcagcagtagcagcagcagcagcagtagtagtaagAAGCAACGCAGCGATAAGCTGCATCAGTTTACGGATatgctgctcgagcgcaacCTGAGCGGCAGCTCGTCAACGGTGCCCGCCTACCACCATAATATCaatgacagcaacaacaacaacaacaacggtcgCAGCAGTAGTGTGCGCAGTAACAAACGATCACTCGATATGACTACTTCCATGCTAATGCTGCAGCAACGCCAGGCGCAGTTTGTTGGCCAATCGGACAGCATCGCCTTCGCGACCAGTAGCGGTAGCAACAACCATTATGGTGATGACtacgagcaacagcagccacaggacGCACcattgctgccaccgccgccacttGCCGATGAAGctgatcaccagcagcagcagcagcaccaccaccaccacagccaaTGGCGTCGCAAGTGCCCGATCTGCGACGAGCTGTTGCCGAGCAGCCACGATCTGACCGAGCACGTCCGTTCGCACCATGCcgcagagcagcaacagcagcagcaggcatcgTCCGGACGAGACGCAGCGGCCCAGGGtgtcggcaccggcaccaccggcagtacTTTCATCTGCAAAATTTGCTCCAAGGTGCTGTCGTCTGCATCGTCGCTCGATCGCCACGTCCTGGTGCACACCGGCGAACGGCCGTTCCACTGTAAACACTGTGCGCTCACCTTCACCACGAACGGGAACATGCATCGGCATATGCGCCTGCACAAGAACTCACCAGGGCGCGACAGTGTCGAGAAtagcagcgatggtggtgtgaccggcggtgccggtaccgaggCTGTACTGCCATCTTCCGATGGTGGCACCTCCACCGCCGGTAAGGTTCGCCGACGGAAACGTGCTgagccgcagcaacaacaggagcAGTTGATCGTACCgtccacagcaacagcaacagcaacgcaccGATCCAGATTCGaggtgaaggaggaaaaacagaaagggAAGCTGGACAAGCAATTAATGGAGGAGATggaagcgcagcagcagcagcaattggaGAGTGGTgatgacgaagaggacgacgagcaACATCatcttggtggtggtggcgatggtggtcttcgtcgtcgtcgtcgacatcgtcgtcgtcatcgtcggtccATTCCTCATTGCGAGgatgagcaacagcaggatACCGAGGAGAAACTAGATgatgaagagaaggaggatgaagaagaggagctCGAGGATGGGGACGAGATAATGGTGGGAGGTGGGAAGCGCAGGGCAACACAATCgattggcggcggcggtggtggtaagcACCACCGTAAGGTGCGcacgatcaacaacaacctgcTGGAGGGCTCGGTGGTTGCGAGCGGTTGcgacggcagcggtggtgacggcgacggtgtcGGCGGTCAGCGCTTCTGCTgtccggtgtgcgtgcgcaaCGACTTCGGCagcatgctgatgctggagaaCCACCTGGACCGGGAGCATCCATCCATACCGGCCAAGTGCCGCCACTGCGAGACCGTGTTCCGCAGCCACAAGGCGCTGAATGCGCATCGGtgctgcaacaacaacttcCAGAACATCACGCCCGGCTTCAAAGATCTCACCTTCGTCGACTTCTCGAGCGAGAAGTTTCCGCTGATTGCGAAAAACCTGTGCGAGCAGAGCATCCGGACGCCGGTGACGAGTCAGAAGTACGAGTGCGGTCGCTGCTATCGTGCCTTTCCGTGCTCGCAGACGCTGACCATGCACGCGGCCGAgtgtggcatcggtggtggtaagAAGCGTAAGCGCGCCCCGAGTGACTCCGATGCGTCGGATGTACCGTCCGAGGCTGCCTATTCCTCCTACAGTAGTGGGCGTGAGGATCCGCACCAACAATCGCAGTCGgtacagcatcagcaccagcagcagcaacaacacctccagcatcagcagcagcaacagctgctgttgcatcatcatcatcagcagcagcagcaacagcgtcgTGAGGATTTCTTTGCCAATCTGGACCTGCAGAACCGTTCGATAGGTGGACTATCCGAAGCACCGACCACACCGTCCTCTCTGGAGAAGTCATTCTCCTCGCCGCTGGTAAAACTCGAACCGCTCGATTCACCCaccagtggcggcggtggcggtggcggtgctggtggtggtggtggtggtggtagtagtaatgCGTCCACCATGCCGATATACTATCACCACTCGAGCCCAGTGGCCGGTACAACTTTGTTCCAACATCACCAGTCCAGCAACAGTCTGCTGCAcagtcagcaacagcagcagcatcttcacgATGGTGGCAAAGATCTGGCTGATATTCAGAGCATTATCAACGTCGCATCATCGGGCGGACTGTttgggcggcagcagctggacggagtcgacagcagcagccacacgacGCCCTTGTCTGGTCTTGGACTTGGCGATGGCAGCAAGGACTgcggcggtagcggcagcagcgtgtACGCCCATTCGACCGGTTCGcgcggtgatgacggtgaggAGGCCCAGGACATGTTTACGGCCGAGTTCCGGCGCATGAAGCTACGGGGCCAGTTCCCGTGTCGGATCTGCACCGCGGTCTTTCCGAATCTGCGGGCACTCAAGGGCCACAACCGATCGCACGTGACGGcggccggaccgggaccgtACCAGTGCAACATGTGCCCGTACGTCATCAACGATAAGGCCACCCTGATCCGCCATATGCGCACCCACAACGGGGACCGACCGTACGAGTGTGCCCTGTGCAACTACGCGTTCACGACGAAGGCCAATTGCGAGCGGCATCTGAGGAACCGGCACGGGCGGACGACGCGCGACGACGTGAAACGGGCCATCATCTACCACCCATCGGAGGATTCGTCCTGTGAGGATCCGCTAAAGAAGCTGCATCTGTTTAATACACCGCCCGCCGACTACGAGCCGACGGGTGCCGCCACCCAGCGTCACCATGCCCTGCTCGGTGGctacgatgagcagcagctgaaggaacacctacaccaacagcagcaacaacagcgcagCAGTACACCACTATCATCGACCTCGTCGCACTTGAAGGATAtgctggtgccaccggcaTTACCGCTGGGTTACGTgtccggcaccaccaacccacTGCTCGACACTAGCCTGCTGCTACAGACCCctcccggtggcggtggtggtagcagtgAGGGTAGTGCGGCCTTTGGAGCAGCCGTCGGGGCGAAGATCCAGGTGAAGAGCCTGGAGAAGTTGAACCAGTTGACACCACcgcaggaggaggaactgCAAGAAAGCTACGAGCCGCTCATTGATACGAGCGGCGAGCTAACGCCACCGACGCTGCTACACCGTAAGCAgtcgacgacagcagcagcaaccgtgccGGCTCAGCGTCCCATCGACCTGAGCATGGACGCGCTCGATTTGAGCAAGAAACCGCCCAGCAAGAAGCTGGCTGTCGCTGCTACGACCAGCGCAACCACCGATGAAGACGATGGTAACGAGGACGATGAGTGTGGCGGcgatgaggaggaggtggaTGGTGAGGTGCacgatgaacagcagcagcagcagcactacgagAAGGGATCGACTGAAGCAGCCCAATTGAACGGGGATAGGAAGTGTAATGGGGAAGACGCTGTTGTTGCACGCGGCGGTCTAGATTCAGATCGGCGGCGCCGTCGTCAGCATGGAGTGGTTGAGGAGGAGGTGGATAACGAGGACATCGAGGAGCatgaagaggaagacgaggattacgatgaggaagaggaaattAATTTGGCGGAAAGCAAGCAGAGATCtgtgggagctgctgctgctgctgactatACCAAGCAGCTCAACAAGCTGAACCTCTCGACGCAatctcagcagcaccatcaacagctgcaacaacaacagcagcaactgttgaTGAGCGAAACGTTCTCCAAGTTCGACCAGGTGAACTTTTTACAGCTGTATCAGCTCTGCACTCAGCTCAACTCGCTGCAGTTACCGTCGTTCCATTCGCCGCTGCACTCGGCCGCCGCCCCGTTCCTGCAGAACCCGTTGctggcggctgcagcagctggcccaCTAGGCGATCTGTTCGGCAAAGACTTCGGCCTTGGTACGCTGCCAAAtttggcggctgcggcggctgcagcagcagcggcggctaCCGCTTCTACCGGtcgcactggtggtggtgggcactCCTCGCGTGCTAGCGGTGGTGCCAATACCAACCCATACTCCTCACTGCTATCCATGGGCAACCCCTTTCACGCTGCCACCGCTGAAGCATCGGCGAAAGCGACGAGTGCGTCCTCGACACCGCCCAATCTGATCGctccaccaccgtcagcatcaACCAGCTCCTCAGCGTCGCTACTCCGCCAGTCATCGCCGATTGCATCGTTAGCTTCTCCAGGCAAGAGtagcacacaccagcagcaacagcaacatgcgtcgcatcatcatcaccattcacaggcggcggctgcagcggccgccgcagcagcagctgctgctgcagcagccgccggctATGGTGTCCCACCACCAGGTGGaactgctggcggtggcggaggccCTGTCAAAATGGTCATCAAGAACGGGGTGCTAATGCCGAAGCAGAAACAGCGGCGCTATCGCACCGAGCGACCGTTTGCCTGTGAGCACTGCTCCGCTCGCTTCACGCTTCGCTCGAATATGGAGCGCCAcataaagcagcagcatccacagtTCTGGTCACAGCGCCAGCGTGGCGGTGGCCATCACCTGATGCGTCGTGGCAGTGGGGGAGCCTCGGGTGctacctcagcagcagcggcagcagcagccgctgcagccggTGGCTCCCTGGCCGCCGCACTGCAAGGTGGTGTTTTCGGTGGACCGGGAGCAGGAGGAATAggcagtggtagcagtagcggtGGTGCTATCTCGGAGCAGGTCAAGTATGCAATCTTGGCGCAGCAGTCGGGCaagggtggaggaggaggaggagcgctCGGGCTGCATCCGCTACTGCAGAACAtgatcgcgcagcagcagcagcagcagcagcagggtagTGGCCAGGGTGTCGCATCCGACGGAATCACCTCTTCGGGCGGCCAATGGAATGCCACGAATGGGGCTGGTGTTGGCGGCAGTATcgtgcagcaggagcagactCAGCATCCGCATCGGCTGTCGCAGGTGATCCCGCAGATCCACCATCGTTCCGGTATGCAACTCGGTGAACGTCGTAGCTATCAGGACAAGACACCGCTTCTGCACAATCACAACCAACATCACCATAgccatcaccggcagcaccgccatcgtcgccgttgtctGCAGCCCGAGCTCGATGAGCTCGATGAggaactgcagcaacagcagcagcagcaacaattggACCAGCTGGCCCAGGAACGCCATGACAGTGTCGTTTCACCTTTTCCCTCCGATGGTACACTATCGGAGCGACCGAAGCACGCAACGGCGGCCAACGAGCGGCGGGAGCAGCACGCAGAGGATGCAGAGGACGATTCCACACAGCAGCTCGTGatcgacgaggaagaagacgcGGAAGAgccagaggaggaggaggaggaggaaggtaGAGGTGCGGAGTCGAAATCCGACTCGGACCAAACCACCGGGGCAGAGGTAATCCAACGGGCCAACAATAGCAGCATCAGTGAGCACAATGGCGGCGGTAGTGCTAGTATCACGAACCGCATACTCAAACAGAAGCTGGAACAAGGTCTCAATTTGGGCAGTGGTTCGAAtgcgaccgagcagcagcagcaacaacagcgcacgaaccaccagcaacaacaacagcaagttGCTGCTCAAGCAGTGGCCAAAGATATCCTCGAGCAggcaaagcaacagcagcaggagcaacagcaacagcagaaacaatCACCATCAGCGCAATCCAGCGCTATCGATGAAGGCATCAGCAACAGTGACCTGGTGCCGGTTGCCAAACTGCTCGACAATGCCACACACAACAATACGACGCTGGAAAGCTACTTCAGACCCGAAGTTGTGCCACTGGCACACGATCACAGCGACGAGGAGGGCCTAGTGGCGTCCGGGTCCGCGTCCGAGAGCAACAACTCTGGTACGGACGACCCATACCCATCGGCGgtcgcgctgctgcagcagcagaaaaagaagtCCGCGTACAGCCTGGCACCGAATCGGGTCAGCTGCCCGTACTGTCAGCGCATGTTCCCGTGGTCGAGCTCACTGCGACGTCACATCCTCACGCACACCGGCCAGAAGCCGTTCAAGTGCTCCCAGTGCACGCTGCTGTTCACCACCAAGTCGAACTGCGATCGGCATCTGCTGCGCAAGCATGGCGACGTCGAGTCGGCCGTCTCGATACCGGTACCGATCGACGATTTGCTTGATCCGAAACCGGAACCCATCCCGGTAGCCGTAGCCGAGGCGATGAACAAACGGTCCGGAAGCGGCAGTAGCAAGCAGTCCAGCAAGGCcggctcttcctcttcttcgagTATCGCTGGGCCGGCGGCTGGAGGGCTACCGATAACGCCCGCAGAGGTAGAGTCGCTGGACGGTTGCACAGCAGTGGAACAGGAccgggaggaggagaaggagaacaatgaagacgacgacgaagacaaTACCGTTGTCGGTGCGTCGGAAGCAATGGACAGAGTCGAGAAGTCGACCCGTGGGGGAAGGAGCCCTGCACTGGTAACTAACGGTGCCTCCCCGAGTGACGCTGAAACGAAGCAAGTTCCCGATGAAGGACGTAATCTCCGCCATGATTCTAGCGAGCGGATCACCAAGGACGACTCAGCCACAGTTGCCAGTAGTGATTTTggcgagaagaaagaagagaagcaggagcagcaggaggacggacagaacgatgatgatgaagtagatgaggagctggaggacgaggaggaggatgaggagttTGGTGAAGGCGTGGCAGGCTTGCGAGGCGATCGCATCGGCCTGGCGGATCTGCCCTTCAAGTGTCATCTGTGCGAAAGCTCGGCTGCGAATCGGGGCGCCTGTCTCGATCATATGCGCCAGTGTCATCCGCAGGACTTCGAAGCGCTTCGGTCGAAGGTGGCACTAGATGCgactgctggtgatgctggtggtgacagTGACGGCCAGACAGCGACCACCAACTCCCCGGACGAGGATGAGAGCAGCGGCAACAATGAGTCGGCTACTGcgtgcaccaccaacacggccACCAGTCCCAGACTCCatagtaacaacaacaatattaatcacaacaacaataacaacaacaacggtggcaAGTATCCCGACTATGCCAACAGGAAGGTAGGTCTAAGGTTATCTGCGCCTTCTGTATGCGTCGCTTCTGGTCGACGGAAGACCTGA
- Protein Sequence
- MDAGGRLLVAAEGAADTITTTIKTEVTEAAEQKPQQQIDQHHHTVGVEEDEGGGAKPNRRSSADPIAAAAAATATGRPTGDVERRRESGEGRTNIDRRGSSGSNSSGASIRSNNNTNNNHSNHSSSSSSSSSSSSSSSKKQRSDKLHQFTDMLLERNLSGSSSTVPAYHHNINDSNNNNNNGRSSSVRSNKRSLDMTTSMLMLQQRQAQFVGQSDSIAFATSSGSNNHYGDDYEQQQPQDAPLLPPPPLADEADHQQQQQHHHHHSQWRRKCPICDELLPSSHDLTEHVRSHHAAEQQQQQQASSGRDAAAQGVGTGTTGSTFICKICSKVLSSASSLDRHVLVHTGERPFHCKHCALTFTTNGNMHRHMRLHKNSPGRDSVENSSDGGVTGGAGTEAVLPSSDGGTSTAGKVRRRKRAEPQQQQEQLIVPSTATATATHRSRFEVKEEKQKGKLDKQLMEEMEAQQQQQLESGDDEEDDEQHHLGGGGDGGLRRRRRHRRRHRRSIPHCEDEQQQDTEEKLDDEEKEDEEEELEDGDEIMVGGGKRRATQSIGGGGGGKHHRKVRTINNNLLEGSVVASGCDGSGGDGDGVGGQRFCCPVCVRNDFGSMLMLENHLDREHPSIPAKCRHCETVFRSHKALNAHRCCNNNFQNITPGFKDLTFVDFSSEKFPLIAKNLCEQSIRTPVTSQKYECGRCYRAFPCSQTLTMHAAECGIGGGKKRKRAPSDSDASDVPSEAAYSSYSSGREDPHQQSQSVQHQHQQQQQHLQHQQQQQLLLHHHHQQQQQQRREDFFANLDLQNRSIGGLSEAPTTPSSLEKSFSSPLVKLEPLDSPTSGGGGGGGAGGGGGGGSSNASTMPIYYHHSSPVAGTTLFQHHQSSNSLLHSQQQQQHLHDGGKDLADIQSIINVASSGGLFGRQQLDGVDSSSHTTPLSGLGLGDGSKDCGGSGSSVYAHSTGSRGDDGEEAQDMFTAEFRRMKLRGQFPCRICTAVFPNLRALKGHNRSHVTAAGPGPYQCNMCPYVINDKATLIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHGRTTRDDVKRAIIYHPSEDSSCEDPLKKLHLFNTPPADYEPTGAATQRHHALLGGYDEQQLKEHLHQQQQQQRSSTPLSSTSSHLKDMLVPPALPLGYVSGTTNPLLDTSLLLQTPPGGGGGSSEGSAAFGAAVGAKIQVKSLEKLNQLTPPQEEELQESYEPLIDTSGELTPPTLLHRKQSTTAAATVPAQRPIDLSMDALDLSKKPPSKKLAVAATTSATTDEDDGNEDDECGGDEEEVDGEVHDEQQQQQHYEKGSTEAAQLNGDRKCNGEDAVVARGGLDSDRRRRRQHGVVEEEVDNEDIEEHEEEDEDYDEEEEINLAESKQRSVGAAAAADYTKQLNKLNLSTQSQQHHQQLQQQQQQLLMSETFSKFDQVNFLQLYQLCTQLNSLQLPSFHSPLHSAAAPFLQNPLLAAAAAGPLGDLFGKDFGLGTLPNLAAAAAAAAAAATASTGRTGGGGHSSRASGGANTNPYSSLLSMGNPFHAATAEASAKATSASSTPPNLIAPPPSASTSSSASLLRQSSPIASLASPGKSSTHQQQQQHASHHHHHSQAAAAAAAAAAAAAAAAAGYGVPPPGGTAGGGGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWSQRQRGGGHHLMRRGSGGASGATSAAAAAAAAAAGGSLAAALQGGVFGGPGAGGIGSGSSSGGAISEQVKYAILAQQSGKGGGGGGALGLHPLLQNMIAQQQQQQQQGSGQGVASDGITSSGGQWNATNGAGVGGSIVQQEQTQHPHRLSQVIPQIHHRSGMQLGERRSYQDKTPLLHNHNQHHHSHHRQHRHRRRCLQPELDELDEELQQQQQQQQLDQLAQERHDSVVSPFPSDGTLSERPKHATAANERREQHAEDAEDDSTQQLVIDEEEDAEEPEEEEEEEGRGAESKSDSDQTTGAEVIQRANNSSISEHNGGGSASITNRILKQKLEQGLNLGSGSNATEQQQQQQRTNHQQQQQQVAAQAVAKDILEQAKQQQQEQQQQQKQSPSAQSSAIDEGISNSDLVPVAKLLDNATHNNTTLESYFRPEVVPLAHDHSDEEGLVASGSASESNNSGTDDPYPSAVALLQQQKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSQCTLLFTTKSNCDRHLLRKHGDVESAVSIPVPIDDLLDPKPEPIPVAVAEAMNKRSGSGSSKQSSKAGSSSSSSIAGPAAGGLPITPAEVESLDGCTAVEQDREEEKENNEDDDEDNTVVGASEAMDRVEKSTRGGRSPALVTNGASPSDAETKQVPDEGRNLRHDSSERITKDDSATVASSDFGEKKEEKQEQQEDGQNDDDEVDEELEDEEEDEEFGEGVAGLRGDRIGLADLPFKCHLCESSAANRGACLDHMRQCHPQDFEALRSKVALDATAGDAGGDSDGQTATTNSPDEDESSGNNESATACTTNTATSPRLHSNNNNINHNNNNNNNGGKYPDYANRKVGLRLSAPSVCVASGRRKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -