Basic Information

Insect: Anopheles albimanus
Gene Symbol: -
Assembly: GCA_013758885.1
Location: NC:3638035-3640091[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.71 34 4.5 5.0 1 23 230 252 230 252 0.93

2 8 0.00061 0.029 14.2 0.4 3 23 312 333 311 333 0.95

3 8 0.81 39 4.4 0.4 1 23 337 362 337 362 0.91

4 8 0.0032 0.15 11.9 1.1 1 21 397 417 397 418 0.94

5 8 8.8e-06 0.00042 20.0 0.3 1 23 423 445 423 445 0.99

6 8 9e-07 4.3e-05 23.1 1.8 1 23 451 473 451 473 0.95

7 8 0.0072 0.34 10.8 5.1 1 23 479 501 479 501 0.98

8 8 0.00012 0.0055 16.5 2.2 1 23 507 530 507 530 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.71	34	4.5	5.0	1	23	230	252	230	252	0.93
2	8	0.00061	0.029	14.2	0.4	3	23	312	333	311	333	0.95
3	8	0.81	39	4.4	0.4	1	23	337	362	337	362	0.91
4	8	0.0032	0.15	11.9	1.1	1	21	397	417	397	418	0.94
5	8	8.8e-06	0.00042	20.0	0.3	1	23	423	445	423	445	0.99
6	8	9e-07	4.3e-05	23.1	1.8	1	23	451	473	451	473	0.95
7	8	0.0072	0.34	10.8	5.1	1	23	479	501	479	501	0.98
8	8	0.00012	0.0055	16.5	2.2	1	23	507	530	507	530	0.95

Sequence Information

Coding Sequence: ATGAGTCTAGAGATTGATCTGAACAACGTATGCCGGATCTGCCTATCGGAATCCGATCCCCGTCCCTCCCTTTTTCACATCTTCACCGACACCATCGTGGACGGAACGTTAGTGGCCTTCCCGTACGTGGTCGAGTTTTGCTTGGACTTGAAGCTAGGACAAGATGTAGAAGGAACTCCCAACAAGGTGTGCCAAGCATGTCGCTCGCAGTTGTTCCAGTTTTACATCTTCAAGCAAAAGAGCCACCGAACGGACAAGCTCATCCAATCGTTGCTGCAAACCGAACCGCAACCGACGCAGAAAGTGGAAATATGCTCGGTTAAGGAAAACACTTCCATTTACGAATTGTCCGAGGAGGTGTTGAGTGAATCGGAAGAGACGCCCTCTATGgtggccgaaccgaacgtcGGCTCATTAGTCTATGATAACGAGGAATTTATGCTAGAAGACGAGCTCATCGAAGAATCAATGATGCACCTAGACACATGCAAACCATTGGAGCAGAATGGTGAATCACTGGAAAACGAAAGTCAGATACACCAGGACACTACGTACGCGGGTGAAGAGGGTACGGAAGGTGAGGTTGAATCAAGCAATGCCGATAGTACAACCCACCTCGAAGAGCCCAACAAGCAAGTGCAGCTAGTTAGTGTTGTTCCGCTTCCAAGTGTTACGGAGGGGAAGGAATTTAAATGTGCTACTTGCGCCACCAATCACGGCTCAAGAGCTTGTCTGAAGCGGCATATGAGGAAGCACAGGAACGTTAATGTTCTGCTCGAGCACATGAGTTTCTATTCCTGTGAGGTTTGTCATTCGCTGTATCTGAATGAAGAGGAGCGAAACGAACATACCCAGGCATGTGTCAATTCGTTCGCGAACAACGATGAAGCACTATCCGAGCGCGGTCAGCAtctcgatgatggtggagggCTGTGTGGCGTGTGCAATGTATCCTATGTCCGGAGCGAACTGCTTAAACACCACATGATACTCACTCACCTGCAGAAATTTTCCTGCCCCTTCGAGAACTGTGGCTGCGACTACAATTCACTGGCACCGCTCGCTCTGCACGTTACCAACAAGCATGTACAACCGACGGAATCCATCTGTTGCCAGCGGTGCAAAGAAGAGATCCCTCGGGGATGCATGGAACAACATCTAGAATCGGTCTGCAAACCTAAAGTTCAATTTGATTGTACTCACTGTGATAAAAAATTCCTATCATCTCGAGCTCTTGCACAACACCTTAAACAACTGGAGCAACGGTTCCAGTGTACGGTCTGCGAGAAGTCGTTCGCCGCGCTAGCGTCATTGCGATCACATCAACTAACACACACGGGAGAGAAGCCATTCCTTTGCACCGTTTGCGGTAAGTCGTTTACGACGGCCAGTCACCGGACCGCTCACATGGATACGCACATTAAGGGTAAGTTGTTCGAGTGTGATTTGTGCGGTAAGTGTCTGCAATCGCGCGCCTGCTACCGGAACCACGTGAAACGACACCGCCAGGAGCGGAGCCATCGATGCGATATCTGCAGCAAAATGTTCTACTCCAAGTACAGTGTCCGTGTGCACCAGCAGGAGGTACATAAGATGAAAAACGTTACCCAACCGGATGAATCAGATGCAGGAAACCGTTAA
Protein Sequence: MSLEIDLNNVCRICLSESDPRPSLFHIFTDTIVDGTLVAFPYVVEFCLDLKLGQDVEGTPNKVCQACRSQLFQFYIFKQKSHRTDKLIQSLLQTEPQPTQKVEICSVKENTSIYELSEEVLSESEETPSMVAEPNVGSLVYDNEEFMLEDELIEESMMHLDTCKPLEQNGESLENESQIHQDTTYAGEEGTEGEVESSNADSTTHLEEPNKQVQLVSVVPLPSVTEGKEFKCATCATNHGSRACLKRHMRKHRNVNVLLEHMSFYSCEVCHSLYLNEEERNEHTQACVNSFANNDEALSERGQHLDDGGGLCGVCNVSYVRSELLKHHMILTHLQKFSCPFENCGCDYNSLAPLALHVTNKHVQPTESICCQRCKEEIPRGCMEQHLESVCKPKVQFDCTHCDKKFLSSRALAQHLKQLEQRFQCTVCEKSFAALASLRSHQLTHTGEKPFLCTVCGKSFTTASHRTAHMDTHIKGKLFECDLCGKCLQSRACYRNHVKRHRQERSHRCDICSKMFYSKYSVRVHQQEVHKMKNVTQPDESDAGNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00098607;
90% Identity: -
80% Identity: -