Basic Information

Insect: Anopheles albimanus
Gene Symbol: -
Assembly: GCA_013758885.1
Location: NC:76483302-76485904[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.5 4e+02 1.2 4.8 2 21 233 252 232 255 0.88

2 14 0.00068 0.032 14.0 0.3 2 22 274 294 273 294 0.96

3 14 0.0024 0.12 12.3 2.1 1 20 299 318 299 321 0.93

4 14 2.6 1.2e+02 2.8 0.6 1 22 327 348 327 350 0.87

5 14 0.0017 0.08 12.8 2.2 1 22 362 383 362 383 0.96

6 14 0.029 1.4 8.9 0.4 1 23 387 410 387 410 0.95

7 14 2.7 1.3e+02 2.7 0.3 1 23 440 464 440 464 0.85

8 14 0.00037 0.017 14.9 0.4 1 21 480 500 480 501 0.94

9 14 6.6e-07 3.1e-05 23.5 1.6 1 23 508 530 508 530 0.98

10 14 0.00024 0.011 15.5 4.3 1 23 536 558 536 558 0.92

11 14 0.00014 0.0068 16.2 7.8 1 23 565 587 565 587 0.97

12 14 7.7e-05 0.0037 17.0 2.4 1 23 593 615 593 615 0.98

13 14 2.6e-07 1.2e-05 24.8 0.8 1 23 621 643 621 643 0.99

14 14 0.00017 0.0082 15.9 3.7 1 23 652 675 652 675 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.5	4e+02	1.2	4.8	2	21	233	252	232	255	0.88
2	14	0.00068	0.032	14.0	0.3	2	22	274	294	273	294	0.96
3	14	0.0024	0.12	12.3	2.1	1	20	299	318	299	321	0.93
4	14	2.6	1.2e+02	2.8	0.6	1	22	327	348	327	350	0.87
5	14	0.0017	0.08	12.8	2.2	1	22	362	383	362	383	0.96
6	14	0.029	1.4	8.9	0.4	1	23	387	410	387	410	0.95
7	14	2.7	1.3e+02	2.7	0.3	1	23	440	464	440	464	0.85
8	14	0.00037	0.017	14.9	0.4	1	21	480	500	480	501	0.94
9	14	6.6e-07	3.1e-05	23.5	1.6	1	23	508	530	508	530	0.98
10	14	0.00024	0.011	15.5	4.3	1	23	536	558	536	558	0.92
11	14	0.00014	0.0068	16.2	7.8	1	23	565	587	565	587	0.97
12	14	7.7e-05	0.0037	17.0	2.4	1	23	593	615	593	615	0.98
13	14	2.6e-07	1.2e-05	24.8	0.8	1	23	621	643	621	643	0.99
14	14	0.00017	0.0082	15.9	3.7	1	23	652	675	652	675	0.98

Sequence Information

Coding Sequence: ATGGACATCCTGATCGAGCCGGATTGCTACAAAGTGTGTCGCATCTGCATGGAGAGCTGCGAGGATGATTTCGTCTGTGTTTACGACGAGTTTGAGGATATGATATTGAGCGACGTAATCACGGAATGTGCCCGAATTGAAATTCGTAAGCACGATGCACTTCCACGCAATGCTTGCCGGAACTGCGCGGAATACATGATCATCGCATATCACATCATTCAAAAGTGCCGTGAATCGGATGCGACGCTACGATCAATCTTTCGTCACGAGCTAAACGTGCGCGACGGCGAGCGGAACAATGAGTTAGCACGGGAAGGCGCCCGCATGGGGGTTACCGAAGACATGGACCCTGCGGATTATGAATTTCTATTGGGACTTGGGCTGGACGGTGAGCCATTGCTCGAAGAACCGAGCTTCACTGGCCCGGTAGATGCTGGAATAGCTGGTGCACCTGTATATGAACAACCAGCGTCATCACTTTCAACTgaaaaccaacagcagcagcagcagcaacagaaggagGGAGAAATGCATGCTATTTCATTATCACCCACGTATGTAGACAAAGCTACCAGCAACGACCATCCGTCCCAAGTTGTTGGCGAAGAAGCTACTGCTGTTCGGATCGCGGAAATCGTCCATGAAtcaagcgaaacgaacgaagaagattCATCTGTAGCGCagggagaggagaaaaaatgCTGCGGTTGTCGGAAGCTTTTCTACGATGAGCGCAGCTTGCTGGATCATTGTCGAGACGTACATATGCCAGCACAGGAATGCCAACAGGAGGGTAGCTCCGACGATGGTAAACGATGGCGCTGTTCCGTATGCTATAGAGGATTCAGTAGTTTGCAGCTGCTCAAGGAACACCAGCGTACGGTGAACAGAAAGTACGTTTGTGCGCGCTGTGGGAAGCGATTTATGACCCAGGCAAACCTAGATACACACAGCAAATGCCATAAGGACAGGGAAACGTACAAATGTTGCGGATGTCGGGGCGAGTTCGAAACGGAACTGGAGTTGCTACTTCATTCCGAGCAGGTACATAGACCGGAACGAAAGGAGGATTCAGACAAACCGTTCGAGTGCGAAACATGCTTCCGCCGATACTCGAAGCGTAAGTCGCTGGTGAAACATCGGCGTATGGCCCGCCAATTTCAGTGCCAAACATGTGGTGCAATTTTTATGAAGCAACTATTCCTTACGCTCCACACCGAGAGCGTCCATCGCCGGGGAttggaacaggaacagcagcaaccacatcatcagcagcagctgctgctgcagcaacaggatcAAGCACGTCTGCAGAAGTACCGATGTTGCGGTGGCTGTCGTGATGAGTTTGCGGATATGGCCGCACTGCGGGAGCATTCCGAGCGGGTGCACGGCAAGGACGATGATCGAACCCGTGCACAAGGCGCCGATCGACCGTTTCAATGTTCGATCTGTCGCAAACGGTTCGCCACTGCCATCTATCTATTGCAGCACCGAAGCAGGGAGTTCCGCGAGAAATGCTTCCCATGTAGTATCTGTGGTCGAACGTTCAATCGGGCGCACGATCTATCCAACCACCAAACGACGCACTCCAACGAGATGCCATTCGAGTGTAATGTCTGTGGTCGACGATTCAAGAATAAAATCTATCTCAAGAATCACTGCAAACTACATGCCAGCAGTGCGAAGGAGCACGTGTGTCGCCAATGCGGCAAATGCTTCCGGACCAAGGAGCTGCTGAAAACGCACCATATCTCCCATTCGCAGGAACGCAAACACGAGTGCACAGTGTGTGGGGCTGCCTTCAAGCGGCTCCAGTGCCTGAAGATACATACCCGGGTGCATACAAGAGAGAAAGCGTACGAATGCAGCGTCTGCCGGAAACGGTATGTGCAAGCTTCCGACCTCAAACGGCATATGCTGACCCACAATCCGGATGTTGAGGGAAAACCATTCCAGTGTGAACACTGTTTACGCCGTTATCCGCGCAAAGATTATCTGAAGATGCACGTTCGTCGACAGCATCCGGAACAGCATACCGCCAAGCCCGAACCTCAGCAGCTTCCCGCTGCTCTAGAATTGATTGCAACAGCTAATGAAACGGATCCGCCTCCAACGGTCGCGACGAGTGACACTGCAGCTTTAGCAGATGCTGccatggttgatgatgatgtagggGATTTTATGCGTCTATGCTAA
Protein Sequence: MDILIEPDCYKVCRICMESCEDDFVCVYDEFEDMILSDVITECARIEIRKHDALPRNACRNCAEYMIIAYHIIQKCRESDATLRSIFRHELNVRDGERNNELAREGARMGVTEDMDPADYEFLLGLGLDGEPLLEEPSFTGPVDAGIAGAPVYEQPASSLSTENQQQQQQQQKEGEMHAISLSPTYVDKATSNDHPSQVVGEEATAVRIAEIVHESSETNEEDSSVAQGEEKKCCGCRKLFYDERSLLDHCRDVHMPAQECQQEGSSDDGKRWRCSVCYRGFSSLQLLKEHQRTVNRKYVCARCGKRFMTQANLDTHSKCHKDRETYKCCGCRGEFETELELLLHSEQVHRPERKEDSDKPFECETCFRRYSKRKSLVKHRRMARQFQCQTCGAIFMKQLFLTLHTESVHRRGLEQEQQQPHHQQQLLLQQQDQARLQKYRCCGGCRDEFADMAALREHSERVHGKDDDRTRAQGADRPFQCSICRKRFATAIYLLQHRSREFREKCFPCSICGRTFNRAHDLSNHQTTHSNEMPFECNVCGRRFKNKIYLKNHCKLHASSAKEHVCRQCGKCFRTKELLKTHHISHSQERKHECTVCGAAFKRLQCLKIHTRVHTREKAYECSVCRKRYVQASDLKRHMLTHNPDVEGKPFQCEHCLRRYPRKDYLKMHVRRQHPEQHTAKPEPQQLPAALELIATANETDPPPTVATSDTAALADAAMVDDDVGDFMRLC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00098537;
90% Identity: iTF_00098537;
80% Identity: -