Basic Information

Insect: Anopheles albimanus
Gene Symbol: -
Assembly: GCA_013758885.1
Location: NC:40296687-40299626[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0016 0.074 12.9 2.8 1 23 192 214 192 214 0.98

2 11 3.2e-05 0.0015 18.2 1.0 1 23 220 242 220 242 0.97

3 11 0.00062 0.029 14.2 5.4 1 23 248 271 248 271 0.96

4 11 5.6e-05 0.0026 17.5 3.1 1 23 277 299 277 299 0.98

5 11 1.1e-05 0.00054 19.6 2.2 1 23 305 327 305 327 0.99

6 11 0.00015 0.0073 16.1 0.7 1 23 333 355 333 355 0.97

7 11 0.00035 0.017 15.0 1.4 1 23 363 386 363 386 0.97

8 11 0.00094 0.045 13.6 1.0 2 23 393 414 392 414 0.97

9 11 0.00059 0.028 14.2 0.7 1 23 420 442 420 442 0.98

10 11 6.7e-06 0.00032 20.3 3.1 1 23 448 471 448 471 0.96

11 11 3.8e-06 0.00018 21.1 3.3 1 23 485 507 485 507 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0016	0.074	12.9	2.8	1	23	192	214	192	214	0.98
2	11	3.2e-05	0.0015	18.2	1.0	1	23	220	242	220	242	0.97
3	11	0.00062	0.029	14.2	5.4	1	23	248	271	248	271	0.96
4	11	5.6e-05	0.0026	17.5	3.1	1	23	277	299	277	299	0.98
5	11	1.1e-05	0.00054	19.6	2.2	1	23	305	327	305	327	0.99
6	11	0.00015	0.0073	16.1	0.7	1	23	333	355	333	355	0.97
7	11	0.00035	0.017	15.0	1.4	1	23	363	386	363	386	0.97
8	11	0.00094	0.045	13.6	1.0	2	23	393	414	392	414	0.97
9	11	0.00059	0.028	14.2	0.7	1	23	420	442	420	442	0.98
10	11	6.7e-06	0.00032	20.3	3.1	1	23	448	471	448	471	0.96
11	11	3.8e-06	0.00018	21.1	3.3	1	23	485	507	485	507	0.96

Sequence Information

Coding Sequence: ATGAATAGCAAACGCACCAAACCGGAGCCCCCGGTCGGCGGCACTCGAAAGATACTGCGAACTAcaacaacggcggcggcggatgaAGCAGCAACTTCTTCGAGGAAAAAAGGTCCGGAGACTCGTCccgcaaaacagcagcagcagcagctgctgcggaaACCGGTGCAGAAGGTAGAGCCCGAGTCGGAAATGGAAGAACTGGCCGTGGTTGAGCAGGATGAGACCGAGGGAGAGGAGCGTGGTTGCTTTTTTATGGACCAGAAGGGCAATTATTACTACAAAGCCAACGATGATGCGGAACCGATGCTTACGAATCTAGGCACGGATGTCAGCGATGCGTTTGGCGAGCTGGACGGAAGCCTGATCAAAGATGAGGAAAGCGACCGTTACGTGCTGATcatggacgaggacgagcaaaGGTCCACGATTCTGCCGGAGGGCGTCTCCGATGGCGATCAGCAGGTGGAAGATAGTGAGGTTTACGAGTTCGAAGAACATGAGTATGCTGTCCCGGATGCAAAggggaaaaagcaaacgcgcAAGAAGGGAGGCTCGGCAGGCGCATCCACCTACATGTGTAACTATTGTAACTACACGAGCAACAAACTGTTTCTTCTGTCGCGCCATCTTAAATCCCACTCGGAGGATCGGCCCCACAAGTGTTCGGTGTGCGAACGAGGCTTCAAGACGCTGGCTTCGCTGCAGAACCACCTGAATGCGCACACCGGCACCAAGCCGCATCGCTGCAAACGCTGTGATTCTTGCTTCACCACTTCCGGCGAGTTGGTTCGTCACGTTCGCTATCGCCATACGCTCGAGCGGCCCCACAAGTGCACCGAGTGTAATTACTCGAGCGTCGAGCTGAGCAAGCTGAAGCGCCACATCCGGACGCACACGGGCGAGAAACCGTTCCAGTGTCCACACTGCACGTACGCGTCCCCGGATAAATTCAAACTGACTCGTCATATGCGCATCCATACCGGTGAAAAACCGTACTCCTGTGATGTTTGCTTCGCGCGCTTCACGCAATCCAACTCGCTGAAAGCACACAAACTAATACATCAAGTTGGCGATAAACCCGTGTTCCAGTGTGAACTGTGCCCGACGACCTGTGGCCGGAAGACGGATCTGCGCATACATGTGCAGAAGCTGCACACATCGGATAAACCGATCAAGTGTAAACGATGCGATGGCAGCTTCCCCGATCGCTACTCGTACAAGATGCACGCGAAAACGCACGAAGGGGAGAAGTGCTACAAGTGTGACTACTGTCCGTATGCCTCGATCTCGCTGCGCCATCTGGAGTCGCATCTGTTGCTGCACACCGACCAGAAGCCGTTCCAGTGTAACCAATGCACCCAGACGTTCCgccagaagcagctgctgaagCGCCACATTAATCTCTATCACAATCCGGACTACGTGCAACCGGAGCCGCGTGCCAAGACACACGTGTGTCCGAGCTGTCCGCGCCGCTTTCGGCACAAGGGCAACCTCATGCGGCATATGTCACTGCACGATCCGGAATCGACCATGCACGAGGAGAAGATGGCATTGCGCGAGGGTCGCCAGAAGAAGGTGCACATTTTGCTGGAAGAGGAGGTgtacgaggacgaggaggatgatgtgatgggcgaggaggaggatggcGAAGATGTCGAGGACCAGGAACAGGCACATACGACCTCGTCTGTAAGCGATGTCGTCGCGGGcgaggaagacgaagatggGCAGTTTGTCCTACTAGAAGTCATACGGCTACAGGACAAAGATAAACCGGAGAAAGCACCAAAGACCGCGACGCCGAAGGAACCGAGTCGTCGCTCTCTACGAACAAGGACAACACAGCCGGTGTCGGTTGTCGCATCTGGAACCGGAAGCGGCACTACAAAACCTTTATTGCACAACGTTAAGCTGGAAAAGATGTCAATGGAAGTGCGGGGAGTCGGCGATGATCTGGACGCCGATAACACCGAGTTGGAGCTGGTTCCGGCccaggacgaggacgatgatgatgatggtcagcaTATTGTGATTCAACAGAGTGGCGATGAATCCGAAAGCGAGTTTATCCTCACAGCGGAAGATTTGGAAGACGCCGAAATGCTATTACCGTCACTGCCGGCAGCGAAGCAAAGTCGCTACGATATCAGCACTATCCAAGTAACTCAGTCGGAGATGGAAAAGAACATGAGTACTTGCTTTGGCTTCGAGgacgatgatgatgaggaagacgaCACTGTGAATAACAAGGGAACGATCACTCTACTTAACTAG
Protein Sequence: MNSKRTKPEPPVGGTRKILRTTTTAAADEAATSSRKKGPETRPAKQQQQQLLRKPVQKVEPESEMEELAVVEQDETEGEERGCFFMDQKGNYYYKANDDAEPMLTNLGTDVSDAFGELDGSLIKDEESDRYVLIMDEDEQRSTILPEGVSDGDQQVEDSEVYEFEEHEYAVPDAKGKKQTRKKGGSAGASTYMCNYCNYTSNKLFLLSRHLKSHSEDRPHKCSVCERGFKTLASLQNHLNAHTGTKPHRCKRCDSCFTTSGELVRHVRYRHTLERPHKCTECNYSSVELSKLKRHIRTHTGEKPFQCPHCTYASPDKFKLTRHMRIHTGEKPYSCDVCFARFTQSNSLKAHKLIHQVGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPIKCKRCDGSFPDRYSYKMHAKTHEGEKCYKCDYCPYASISLRHLESHLLLHTDQKPFQCNQCTQTFRQKQLLKRHINLYHNPDYVQPEPRAKTHVCPSCPRRFRHKGNLMRHMSLHDPESTMHEEKMALREGRQKKVHILLEEEVYEDEEDDVMGEEEDGEDVEDQEQAHTTSSVSDVVAGEEDEDGQFVLLEVIRLQDKDKPEKAPKTATPKEPSRRSLRTRTTQPVSVVASGTGSGTTKPLLHNVKLEKMSMEVRGVGDDLDADNTELELVPAQDEDDDDDGQHIVIQQSGDESESEFILTAEDLEDAEMLLPSLPAAKQSRYDISTIQVTQSEMEKNMSTCFGFEDDDDEEDDTVNNKGTITLLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00098530;
90% Identity: iTF_00098530;
80% Identity: -