Basic Information

Insect: Anopheles albimanus
Gene Symbol: -
Assembly: GCA_013758885.1
Location: NC:2794072-2797820[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00029 0.014 15.2 2.0 3 23 185 205 184 205 0.98

2 9 1.1e-07 5.1e-06 26.0 3.6 1 23 211 233 211 233 0.98

3 9 0.00018 0.0085 15.9 2.4 3 23 247 267 245 267 0.95

4 9 8.6e-05 0.0041 16.9 4.4 1 23 273 295 273 295 0.99

5 9 2.3e-06 0.00011 21.8 0.4 1 23 301 323 301 323 0.98

6 9 1.1e-06 5.3e-05 22.8 0.7 1 23 329 351 329 351 0.98

7 9 4.8e-05 0.0023 17.7 0.9 1 22 357 378 357 378 0.97

8 9 7.4e-06 0.00035 20.2 3.4 1 23 385 407 385 407 0.97

9 9 0.00024 0.011 15.5 0.8 1 23 412 435 412 435 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00029	0.014	15.2	2.0	3	23	185	205	184	205	0.98
2	9	1.1e-07	5.1e-06	26.0	3.6	1	23	211	233	211	233	0.98
3	9	0.00018	0.0085	15.9	2.4	3	23	247	267	245	267	0.95
4	9	8.6e-05	0.0041	16.9	4.4	1	23	273	295	273	295	0.99
5	9	2.3e-06	0.00011	21.8	0.4	1	23	301	323	301	323	0.98
6	9	1.1e-06	5.3e-05	22.8	0.7	1	23	329	351	329	351	0.98
7	9	4.8e-05	0.0023	17.7	0.9	1	22	357	378	357	378	0.97
8	9	7.4e-06	0.00035	20.2	3.4	1	23	385	407	385	407	0.97
9	9	0.00024	0.011	15.5	0.8	1	23	412	435	412	435	0.97

Sequence Information

Coding Sequence: ATGCGCCACGGGTCATCCACGCGACTTGAACCGTGCGTCTGCTCCAGGCCTGCCGTTAAATTATACGTACAACTATATTCAAGCGCTTCCACAGTGAGCACTATGGATGTGGAGAACTTTGAGCAGGTGGATGAATCGCTGGAAATCGGTTCGCTAGACTTGGAGCAAATCTGCCGATGTTGTATGGCATCGAAGCGGCGCATGAAGCCGCTCTATACTATGGACCTGGACGAAATGCTGCACGTCGTTACCGGTATCCGGGCACGGCCAGACGACGGCCTACCGGGGCTCCTCTGTGTTCCGTGCGTGCTACAGCTGCGTCGCTCGCATTACTTCAAATTGCAGAGCGAGAAAACGGATCGGATTCTGCGGGGATACGTGAGCCACGAATCGTTTTTGAAAAGCTTCGAACAGGATGCACTTCCAAACTCGGAAGATTCAGGGCCGAAATTGGAAGAGCCAGTAGACTCTGCGCCGGTTGATACGGATTCCAACAATGAGCCAACCAGCCGGAAGTGTGATCTGCGCATCGAGCTTGCCCAACCGGTCGCCTGCTCCAAATGTGACAAAGAGTTCCTGAACCAGCGAAAGATGAAGCGCCACATGCGGATACACAGCAGCGAGCGATATCATCAATGCACCCAGTGTGAGATGTCGTTCGCAGATAAGTCCAACCTGACCAAGCACATGCGGAAGCACACGGGCGAGCTTCGGAATCTGAAAAACAAGCCACACCTCTGCGCGGAGTGTGGCAAGTCGTTCAAGTACGGGACCTCGCTGTCGCGCCATAAGCGGCTGCACAGCAAACGTAATGTTTTCACCTGTGAAATCTGCCACAAGTTTTACGCCGAGCACCAGACGCTGGTGAACCACATGCGAACCCATACGAACGAAAGGCCTTATTCCTGCAGCATTTGCGACAAGCAATTTGCGCAGAAGCCAAACCTTGATCGCCATGAACTGACGCATACGGGCGTCAAACCGTATGCTTGCGATCTGTGTGAAAAGCGTTTCTCGCAAAAGAGTTACTTGATCGTGCATAAGCGGATTCACACGGATGAAAAACCGTTCAAATGTTCATCCTGTTCGATGGCATTCGTATCGCAGAACTCGCTCCAGAAACACCAGCGTACACCATGTTCGGAGCGCCCGTTCGCTTGCACGCGCTGcagcatttcgtttcgctaTAAATCCTCGCTACGTAGGCATAGGCGCAGCCATAAGGATGGCGAATACAACTGCCGTATCTGTGCGATGTCTTTTCGCAACGAGGCTAAACTGTCTAGTCATATGTCGACCAGGCATCCCAACGTGGTTTGGGAGCATGATTACGACGTTACATCCATGGTCACGAGGAAATCAACGAAGCCGGGCGATGACAAAACATACGGATCGGATGATGGATTTGAGCGACTCAAGACTAACGAACTGCAACATCAGGTTGCGCAGGACGATTTGAGAAACCCTAAAGAGGAATCCGTTTTCCTAGAAACGTATGAGGAAGTGGACGAGGAATCCCAAAGCTACGAAGACTGCGCCTACACCGAACAGCTACCCGTAGAGCAAGTTGATAGGGAACCGCTGTTATCGATTCAGATAATCAAAACTGAAGGGACGGGGTTTATGACGGAGTGA
Protein Sequence: MRHGSSTRLEPCVCSRPAVKLYVQLYSSASTVSTMDVENFEQVDESLEIGSLDLEQICRCCMASKRRMKPLYTMDLDEMLHVVTGIRARPDDGLPGLLCVPCVLQLRRSHYFKLQSEKTDRILRGYVSHESFLKSFEQDALPNSEDSGPKLEEPVDSAPVDTDSNNEPTSRKCDLRIELAQPVACSKCDKEFLNQRKMKRHMRIHSSERYHQCTQCEMSFADKSNLTKHMRKHTGELRNLKNKPHLCAECGKSFKYGTSLSRHKRLHSKRNVFTCEICHKFYAEHQTLVNHMRTHTNERPYSCSICDKQFAQKPNLDRHELTHTGVKPYACDLCEKRFSQKSYLIVHKRIHTDEKPFKCSSCSMAFVSQNSLQKHQRTPCSERPFACTRCSISFRYKSSLRRHRRSHKDGEYNCRICAMSFRNEAKLSSHMSTRHPNVVWEHDYDVTSMVTRKSTKPGDDKTYGSDDGFERLKTNELQHQVAQDDLRNPKEESVFLETYEEVDEESQSYEDCAYTEQLPVEQVDREPLLSIQIIKTEGTGFMTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -