Aali006159.1
Basic Information
- Insect
- Anopheles albimanus
- Gene Symbol
- -
- Assembly
- GCA_013758885.1
- Location
- NC:87136542-87138860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00011 0.0052 16.5 1.3 2 23 37 58 36 58 0.96 2 17 0.066 3.1 7.8 4.8 1 23 64 86 64 86 0.98 3 17 0.0034 0.16 11.8 6.2 1 23 92 114 92 114 0.94 4 17 0.0026 0.13 12.2 0.1 2 23 120 142 119 142 0.91 5 17 7.1e-06 0.00034 20.3 2.0 1 23 148 170 148 170 0.98 6 17 0.00053 0.025 14.4 0.9 2 23 174 195 174 195 0.97 7 17 0.0026 0.12 12.2 0.4 1 20 202 221 202 223 0.94 8 17 1.4 66 3.6 8.1 1 23 228 251 228 251 0.98 9 17 0.0028 0.13 12.1 0.1 2 23 396 418 395 418 0.94 10 17 0.0035 0.17 11.8 5.6 1 23 423 446 423 446 0.98 11 17 0.0002 0.0096 15.7 2.8 3 23 453 473 451 473 0.96 12 17 7.9e-05 0.0038 17.0 1.0 1 23 479 501 479 501 0.97 13 17 1.9e-06 9.2e-05 22.0 1.4 1 23 507 529 507 529 0.98 14 17 3.6e-05 0.0017 18.0 0.7 1 23 535 557 535 557 0.98 15 17 0.00066 0.031 14.1 0.5 2 23 564 586 563 586 0.94 16 17 0.00034 0.016 15.0 1.5 3 23 601 621 599 621 0.94 17 17 2.6e-05 0.0012 18.5 1.5 1 23 627 650 627 650 0.97
Sequence Information
- Coding Sequence
- ATGTTCCGAAATTATCGCCGAAAAATGTTGAAGTTGGGGAGGACAACGGAAAACCCGTCGATAATGGAACCCGTTACACCGGTCACTGAACGGCAATCACGCGTAAAGGTCTGCAATTTTTGCAGTAAATCATTTAAATTCAATGCAGCGTTACGACAGCACGAGAAGATCCACTACGGGATTAAGTCGTTCGAATGCGATATCTGCCAGCGACGGTTCCTGCATAAAGCAACTCTAAAATGCCACCTTCGGATACATACGGGAGAAACGCCATACAAATGCCCCCACTGTCCGAAGACTTTCCGGGGACAAACGGCATTAAATTGCCACATTTTCCATCACACCAAAAGGGGGGTGCAATGTCCCGAGTGCTGGAAAGTTTTCGCCACACGGTCTATCGTTAAACAACACGTTCAGCAAGTCCACTCCGTCCAGCGGCCACATGTTTGCAACATCTGTGGAATTACCTACAAATACTTGAAAAGCCTGAAGTTGCACCTTCGCACGCACGAAAAACGTGTTTGTCCAGAGTGCGATATGGTGTTCCATAGTGTTTATGCCATGCGGAAGCATCGGAAAAGCCATACGAAAGAAAACAGGCCCTTTCGGTGTACGTTCTGTGAGCGTCGCTTTGAAAAAGAAGCTGAATTACAGGCACATAGCAAGCTGCGTGGGCGGCCATTTCAATGCTCTCTCTGTTGCCACAGCTTCAACAAACGAACATTTTTAACGAATCATGAGCGCCGAAGCCATTGGAAACAGTTGGGCATAGAACGATTAGAAACAAAGCCATCCAAGTATGCCGGTAGCCAAATAGGACCGGCTATCGGAACTAGCAACTGCGAGGGAGAAAGACAATCGTCACCTGAACTGGGTTCAGTTACGAGCCGAAACAAAGCCGATTGTAATGTTCCAATTAGTGAAAATGCAACTGATACGCAAAACGAAGCCGCAAACTTAGCAAAGCACATTCCGGGAAACTCTGTTAAAAACGAACCTCGCACACTAATCAACAATAGTATAGCCGAAGGCGAAACACTGGAAAATGATTCTTCTTTTCATGAGATGACTTCCGCTGGAACTATCGGATTTCTTCCTACTACAGCGAGTAACACCATATCTAGTGACGATACTAGCGAGCAAGTATGCGAGAATCGTCATACATTCAAGGCGCAACAGGAGTTGATGTGTGAAGTTTGTGGCAAGCTGTACTCATCGGTGGCTACTCTCACCGTTCATCGTACCAGCAACCATAAAGCAAAACGTTTTTCTTGCAACCAGTGCGAACAATCCTTTGGTTATCGATGCCATCTAGATCAACACATAAGAAGGCAACATCGACAGGAACAGCTGGCGTGTAAATTGTGTGGGAAAACTTTTAAATACCCACAGGATATACATGTCCACATGAAACACCACAATGATGCCAAACCGTACAAGTGTAACCAATGTACCTCTACGTTTCGGTTTCCCAGCGCCCTCAGGAGTCACCTCATCCTGCACGAGACGGATTGGCCGTTCCGGTGCGAAGAATGTGGAAAGTCATTTCGCTACGATAACAGCTTGCGTGTCCATCGGAGACTACATGCAGATGCAAAATTGTACGAGTGTGAAATTTGCCATCGAAAGTTTGCCGCAAAGTATGCGATGGTGAGGCACATAAAGGTACATGCGCGACAAAAAGAGCTAAACTGTGAAGTTTGCCAGACCGTGTTTTACAAGAAAAGAGATTTGATAATTCACCAAACCAAAGAGCATTGCAGCGATAGCCTGATCGATAAGATCGCGCCAATATACGGCTGCGATATTTGTGGGAAGGAGTTTGTGAAGAAATGCAATCTCAAGATGCATTCCTATATACACGAGGAACTGCTTCGGTTCGTTTGTAAATTTTGTAACCAGGGCTTTAAACAATATTCCGGACTTAGAAATCATATTCTGCGTACTCATCCTGAAAGTGCAGAAAAGCAAACCGAGGTAAACGCGGAATAA
- Protein Sequence
- MFRNYRRKMLKLGRTTENPSIMEPVTPVTERQSRVKVCNFCSKSFKFNAALRQHEKIHYGIKSFECDICQRRFLHKATLKCHLRIHTGETPYKCPHCPKTFRGQTALNCHIFHHTKRGVQCPECWKVFATRSIVKQHVQQVHSVQRPHVCNICGITYKYLKSLKLHLRTHEKRVCPECDMVFHSVYAMRKHRKSHTKENRPFRCTFCERRFEKEAELQAHSKLRGRPFQCSLCCHSFNKRTFLTNHERRSHWKQLGIERLETKPSKYAGSQIGPAIGTSNCEGERQSSPELGSVTSRNKADCNVPISENATDTQNEAANLAKHIPGNSVKNEPRTLINNSIAEGETLENDSSFHEMTSAGTIGFLPTTASNTISSDDTSEQVCENRHTFKAQQELMCEVCGKLYSSVATLTVHRTSNHKAKRFSCNQCEQSFGYRCHLDQHIRRQHRQEQLACKLCGKTFKYPQDIHVHMKHHNDAKPYKCNQCTSTFRFPSALRSHLILHETDWPFRCEECGKSFRYDNSLRVHRRLHADAKLYECEICHRKFAAKYAMVRHIKVHARQKELNCEVCQTVFYKKRDLIIHQTKEHCSDSLIDKIAPIYGCDICGKEFVKKCNLKMHSYIHEELLRFVCKFCNQGFKQYSGLRNHILRTHPESAEKQTEVNAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -