Aali010240.1
Basic Information
- Insect
- Anopheles albimanus
- Gene Symbol
- -
- Assembly
- GCA_013758885.1
- Location
- NC:84893540-84896105[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.3e-05 0.0011 18.6 2.5 1 23 234 256 234 256 0.98 2 15 0.0031 0.15 11.9 3.4 1 23 265 287 265 287 0.96 3 15 2.6e-06 0.00012 21.6 0.2 1 23 296 318 296 318 0.98 4 15 6.6e-06 0.00031 20.4 4.1 1 23 324 346 324 346 0.98 5 15 0.0045 0.21 11.5 0.1 2 23 354 375 353 375 0.97 6 15 7.7e-05 0.0037 17.0 3.4 1 23 381 404 381 404 0.94 7 15 0.0031 0.15 12.0 5.9 1 21 410 430 410 431 0.94 8 15 8.4e-05 0.004 16.9 1.1 3 23 439 460 437 460 0.93 9 15 2.1e-05 0.001 18.8 0.3 1 23 490 512 490 512 0.98 10 15 0.00022 0.011 15.6 0.3 1 23 523 545 523 545 0.94 11 15 8.6e-05 0.0041 16.9 2.5 1 23 570 592 570 592 0.99 12 15 0.047 2.3 8.2 2.2 2 23 627 648 626 648 0.93 13 15 0.0012 0.059 13.2 2.0 1 23 654 676 654 676 0.98 14 15 8.5e-08 4.1e-06 26.3 3.0 1 23 684 706 684 706 0.99 15 15 0.00074 0.035 13.9 0.8 1 23 712 735 712 735 0.96
Sequence Information
- Coding Sequence
- ATGGATTACGCGTACAACAATAAACCATATTCTGGCCCATCACAGTCGAGCGAAGGCTCGGGATTTTTCTCTCCTGgtgccaacaccaccaccttcatTAAGGTATCGAATCCGCTGATGAAGCAAGAGGCGAAGAGTATAGTTCATGCACCCAGCATCCTCGAAGGAACTGTAACTCCACCCGTGAACTACAGCCAAAATCAGGACTACGCAGAAGAGGATGTGCATGCTGCAGGGAAATCATCGTTCTTCGCTGGCAGAAAGCAGATTGAGCTGCAGATTATCTCGAGTGCttatgtgcagcagcacccacagCAGTTAATGCATGGTCCAGTTCATCCCGCGCATTATCCAGCACATCAGCCTCCTCATCTTCCACATcaacatctgcagcagcacccattACCATCTGTGCCATCACAGGTGCATCAACcgccacagcatcagcaagtAGAGTCGTTGACATCGATTCAGGAGCATCATCAGCCGCTTGGAGTAGGTTATTACGACTATACCAATCATTCGGAGACTAACGTTAGTTCTACGGCCGGAAGTCGTCGCTACAATAGTCAATCGTCACCTCTGGTACCGCTGAACACCGTTACCGGAGAAGCCGTTACTCATGTATTGACGATTCCAGATGTTGCTGGAACATCTTCCATTCCTATTTCCACAGCAAGCGTTGCTGAGACAGCTAGCTTTAGCTGtaacgaatgctcgcaatcgTTTCCCACAAAGCTGAAACTTACGAAACACCAGAAATCGCACGGCGCGGCAAATTCAGACGCAGCGTTCAAGTGCCGAGTGTGCGATAAAATATTTCGCAGTAAAAACACCCTCATATGTCACGAGAAAGTGCACGGGGAGAATGGAGTAGATAATAACTTTTCGTGCGCCGAATGTGGCAAGATGTTTGCCAGCGCGGAGAAGCTGCAGGTGCATCGTCGATTGCACACAGGAGAAAAGCCGTACGAGTGTAAGGTGTGTTCAAAGCATTTTAACCATCAGTCTAACCTGATCGTTCACTCGCGCATCCACGAAAAGGTAAAGAAAGCGATTAAATGCGATCGGTGCAGCAAAGTGCTGGACAATGAGGAAAGGTTGGCGGTGCATATGCGGTTGCACACGGGTGAAAAACCGTACAAATGTTCCTATTGCGACAAGCGGTTCAATCACAAAAGCACGGTCAGTACGCATGAGAAAGCGGCCCATATAGCGGCCAATTCGTTCCGCTGTGATCGCTGCCATAAGACGTTCAATCAAAAGTGTCAACTGCAGTACCATGAAAAGCTGCAAGAAGAAGACACGATCGCCTGTACGATGTGCGACAAGGTCTTCTGCTACAAGGCGAGCCTCAAGGAGCACGTGTTTAAGGCGCACAGTCCGCGGCAGAAGCGAAATCCCAAGAAGGACGGTCAATCCGAATCCAGTGCAAAGGCTGATAACAACGGCCAGGGCAGGAACAGGTACAAGTGTACGGTTTGCGATCGCCGGTTTTATTATGCGCGTGCCCTCGAGCTGCATATGGGCGTCCACGATGCATCGCTCGATGTGAATGTGTTGTACTACTCCTGCAACTACTGTCCCGAAACATTTACCGAGGATGATCTGCTGCGAAAACACGAGGAGGACCATGAGGCCAATGGTACGACGAATTTCATACAGAACATGAAACACCAAACGGCGGAAGAAACAACGAAAGACGGTTTCCGGTGTCCATTATGCTTCAAAGAGTTCACTGGCCAGCAAGCACTTAGGGAGCACCATAAGACGCACCTTTGCGCGAATCCTGAGTGTAGCAAGTGCGTCGCAGCCAATCAAGCCGAGTTCGATCTCACAATCAGCACGTACGATGCAACCGAAGACAAGCGTGAAACGGTGTGCAACGTATGTCACCGAGTGCTATCGACGTTCGAACAATATCAGAACCACTTTTACTATCATACAGCACGCGTCCCATTCTATTGCTACCTTTGCCGGGAGGAGTTTAACGATAAGCGCGAACTCTACATCCACACGAAGACACACCTGCCACGCGTTCCCGAGTCGTATACGTGCAAGAGCTGCGGCAAGGTTTTCTCAACGAAGGGCAACTTTAAGCGACATTTAAAATCTCACGAAGCCGTACGAGCCTTCGCTTGTGATCGCTGCTATAAGCAGTACGACTACAAGAGTGCCCTAGAAACTCATTTGAAGCGAGCACACGGTATCGAACTATAG
- Protein Sequence
- MDYAYNNKPYSGPSQSSEGSGFFSPGANTTTFIKVSNPLMKQEAKSIVHAPSILEGTVTPPVNYSQNQDYAEEDVHAAGKSSFFAGRKQIELQIISSAYVQQHPQQLMHGPVHPAHYPAHQPPHLPHQHLQQHPLPSVPSQVHQPPQHQQVESLTSIQEHHQPLGVGYYDYTNHSETNVSSTAGSRRYNSQSSPLVPLNTVTGEAVTHVLTIPDVAGTSSIPISTASVAETASFSCNECSQSFPTKLKLTKHQKSHGAANSDAAFKCRVCDKIFRSKNTLICHEKVHGENGVDNNFSCAECGKMFASAEKLQVHRRLHTGEKPYECKVCSKHFNHQSNLIVHSRIHEKVKKAIKCDRCSKVLDNEERLAVHMRLHTGEKPYKCSYCDKRFNHKSTVSTHEKAAHIAANSFRCDRCHKTFNQKCQLQYHEKLQEEDTIACTMCDKVFCYKASLKEHVFKAHSPRQKRNPKKDGQSESSAKADNNGQGRNRYKCTVCDRRFYYARALELHMGVHDASLDVNVLYYSCNYCPETFTEDDLLRKHEEDHEANGTTNFIQNMKHQTAEETTKDGFRCPLCFKEFTGQQALREHHKTHLCANPECSKCVAANQAEFDLTISTYDATEDKRETVCNVCHRVLSTFEQYQNHFYYHTARVPFYCYLCREEFNDKRELYIHTKTHLPRVPESYTCKSCGKVFSTKGNFKRHLKSHEAVRAFACDRCYKQYDYKSALETHLKRAHGIEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00098518;
- 90% Identity
- -
- 80% Identity
- -