Basic Information

Gene Symbol
-
Assembly
GCA_951828415.1
Location
OX639994.1:79995162-80000455[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.032 6.8 9.2 4.9 2 23 93 115 93 116 0.93
2 17 0.0085 1.8 11.0 3.3 2 23 164 186 163 186 0.96
3 17 4.3e-05 0.0091 18.2 0.2 2 23 201 223 200 223 0.94
4 17 0.00056 0.12 14.7 0.0 1 20 233 252 233 253 0.95
5 17 1.8 4e+02 3.6 0.2 1 12 279 290 279 293 0.89
6 17 0.00032 0.07 15.5 2.5 1 21 317 337 317 338 0.96
7 17 0.25 53 6.4 3.7 1 23 391 414 391 414 0.94
8 17 0.45 97 5.6 2.1 1 16 466 481 466 487 0.83
9 17 3.5e-06 0.00075 21.6 1.5 3 23 513 534 512 534 0.97
10 17 3.4 7.3e+02 2.8 0.4 1 17 557 573 557 574 0.89
11 17 0.013 2.7 10.5 3.5 1 21 588 608 588 609 0.95
12 17 2.2 4.7e+02 3.4 6.9 3 23 636 657 635 657 0.86
13 17 0.0026 0.56 12.6 0.1 1 23 1111 1134 1111 1134 0.95
14 17 0.54 1.2e+02 5.3 3.1 1 23 1181 1204 1181 1204 0.97
15 17 0.66 1.4e+02 5.0 1.6 1 23 1210 1233 1210 1233 0.96
16 17 0.083 18 7.9 0.6 3 23 1243 1263 1242 1263 0.97
17 17 0.23 49 6.5 5.2 1 23 1270 1293 1270 1293 0.95

Sequence Information

Coding Sequence
ATGGAGGTGTCCACAGCATCAATGGCGCAGGATACGCCAGAAAATACCATTTTTGACATTACTGATCTTgaagtaaatgtaaaaaaggAAGCCGAAATAATAATAGATGACTATGAGGACGATAGAAAACATTATGATACCGAATCtgaaaatagctataattttgaCTATGAACCTGCAATAAAGCGACCATGTATAGAATTGTCTGAATTGGATGTAAAGAAGAAAGCATACATAAAGAGCGCAAGTTATGTTTATGGAAAATATGTTATGAGGCAATGCCCAATGTGCGATTACGAGTTCAATTCGGCCCATTGCTGGAAAAAACATATTAGCTTCATGCATCATTTAGAAAAGCCAGAAGATTTGGACTTCAAATACAATGAGGTCGGAGCGAAGTGCAAGCTGTGTGATTTTCAAACGGCAACACCGAGATTCAATGGCTTACTAGATCACCAAATCTCTCATATGCCTTTCAGTCattatttgaaatgtaaattatgCGACTGGAGAACTAAAACACATTCAAGTATGAATTTGCATTTGCGCCAATACCATTCCGATAAACTTGAAGGGACAACAAAAAGTTTAGAGTTAACTGTTTGTCCATATTGCCAGCAAGAATTTGCATCACAATGGTATTTGCGTAAACATATGATATACGAACATGAAAAAACGACCGAAGACAGAacatgttttatttgtttggacTGTGGGGAAGAATTTTCCACAAATGTCAGTTTACGGGCacatgtatttgaaaaattcgcaGGCAAGACCGTGTCTGACATGGGTTTCAACGAAGTTGCAGCGACAGCGGATACTGAAGCTAAATTCATTTGTACTCAATGTCCAACAGTTTTTCGGAAAATTGCATCCAGCCGGACATTAATTAATGTGCGAGAACATTATATGTTGCATTTAGGAGAACCTTCGGGTAAACACGCTTACAAATGTAGATATTGTGATGAAAGTTTTCGTCGTTTTGATAATATGCGCTTACACATTTGTGAGGGACTACGAAAGGTCTTGCATACTAGTATAGGTATTCATCCTATGAGTAAGACGGCATTTAGAGAACGATTGCTACGTCGAAAACGTCAGAAGGCAAAAAAAAATGAACAGAATGAACTTGTTGATTTTAAAAGGGATTATATGAAACATATACGATATGTCTGCCTAAAATGTGGAGTCTCCTTTGGTAAGCCGATTCATTGCAAGCGACATATGTTCCAGACACATGGCATGAATAAACTAGATGGACTCGATTttaaaaagctcgaaaatgaaGGAGAATCCGATATATACGAATGCACAATATGCGAAGAGTTCACTTGCGATTTCGACTTGAATACCATGTTAGTGCACGCTCGTATTCACACAGTTTTTGATCcttttcaatgcaaattttgtcaCACGTCTTTCGCCTACGAATCGGAAATACCTCGACATGAATGTATAGATACGGACACATCGAAGTCTTTACCTGAATTTAAATATCCAAAGGAGATCCCCATTCCTAACATGGACAGTTTTTGCCCAAAATGTAAGCAAACATACACAAGGGCTTCTAGTCTAACCAGACATATGAATAAAGCACATGGCATGAATGAACCTTACGGGCTCGGCTTTGAAATTTGTGAATCGAATGACACTGAGGGGAAAGTGTACCGTTGCAACGAGTGCGAAAATTTCACAACTacagataaaaatttaagagcTATGCTAGAGCACGCACGACAGCATTTTCCATATGAAAGTTTCAGATGCACGATATGTAAGGAGCGTTTTCGTTTGAAGGAACATGCGAGACGCCATCAGTGTGCCAATGATACCATTGAAGTTGATGATAAGTTCCAAGATGAAGTGTTGACAAAAACTCGTTTGAACAAAATGGGGCGTTTTTGTCCTAAATGCGGAAAAACGTTTAAAAAGACTTGTGTatgtaaaaatcatttaaataaagtacatGGGATGGACAAACCTGAAGGGCTTGGCTTTGAGAAAGTCGAATTGGATGTTGACACCACTGAAGAAACAGAAACATATCGTTGCATGGAGTGCCTAACCTATAAATTACCAAAACTCGATTTGAGTCTTATGTTGGAGCATGCTCGAGAGCACTTTCCGTTTGATAGTTTCTGGTGTATGTTATGTCATGACCGGTTTAGATTAAAAGTAGAAGCGAAAGTACATCGATGCTTAAACGCTCTGAACACAGGTGATGATGATGGAGATAACGACCATACGTCACGTACGAGATATCCGAAGGcatttgaaaagttaataagGAAATTTTGTCCGGAATGCAATACCGAAATGTCTGCTGTGAAAACCTGGCGTTGGCATTTGAGTAGATATCACGAAATGGACACTCTCTCCGGACTACATATGAAAGAAACGAAAGGTAATTTGGTGGAATGTTTGATTTGTCAAGTCCAAACTACACACGCAAGACGGCAGGAGCACAGATTCATACACCTGCCGTTTAAGCCATTCCAATGCAGATATtgtttggaatattttattgaaatcgaaaAAGCAAAATCTCATTGTAACGAATGTATTCAAGCGCCATCAGAATTTCCGGATGACGAAGAACCAAAGAAAGCCGAAGCAACCCCGAGTAAGCGAACACCAGCGATACGCGCGATAATAagtgttgatttaaaaaataaccaaaatcaATTTTCGCCGCAGTTAAAAACAAGTgtgaatgaaaagaaattaaataaatattataaacaaacaaGGAAACGGGAGAGACTGGTTAAATTAGATAAACAATCAGAATCAGAGACTAGCAGTGAAAGTGAGAATGAAACCACAAACAACGGCATATGTGTAGTACTAGCAGATGATCAtgattttgcaaagtttgttaGAATAAGTTGTCCCTTCTGTCCTGATACCGAATTTGAATCCAACCGACTGCTGTCACATCATTTCTACGAAGTTCACGATAGCTTTCGCGAACACTTTACAATTCATCAGACCAACGCGGCGAATTGTAAATcgtgcaataaatattttaatgttgtgTATAAAAAGACAATGATAAAACATTATTTGAGTGAAATCAGCGCAACCTGTTTCTGCTGTCGGCTATGTGACAAGAAAATATTATACTTTGAGACAATGCGCTCACACCTCTTGGACGATCACCAAGCTGTTATTGCCGGACAAACGCAACAGCAATGTAGCTCATCATCTACCTCATCAGATCCTCTGAAAGTTACATCTGTAGATATTTCAAAAGTATCGCGCACCACAATGGCTATACCCACCAGTAAAACAGCTGTATTTAATGAGTTCAATGCATATATCTCATACGCGTGCCCCGAATGCAATATACCATTCGAATCATCTGAACAATGGCATTTGCACATAAACGGCGAGCATAATTTCTTTGAGCAGCATCAATTGAATATCGAAGCAACATCAGATGGCTTTAAGCGTTGCAAACAATGTAGTGTTAATATAAATGGTGGTGTATTGGCCGAACAACGCCACAAGTTGACTCATATGCAGTATAAATCATTTATTTGTACGCTCTGTCAGCATCGGTCGACCACACTGGGTGTACTCACTCAACACTTTCGCAGGCGCCACTTTGCGAAGGGCACATTTGAATGCTGTCTATGTCCAGTGGTTCTAAGCACTTCATGCGAACAAATCGAACATATGAAAAATGATCATGATCCAAGTGAATACCCACCAAAACTTTGTCCCGTTTGTTTTAGTATGTTAAGTTCAGCCCATTCACTGAATACGCATATGGAGTTGCATAATCCCAATCGGGAGCTTTTCCACTGTGATTTCTGCGATCGCAGTTATAAGTATAAGCGAGAATTAAGTTTTCATGTACGGTCCAAACACACCAGGCAAGAAGCTGCCACAACTtaa
Protein Sequence
MEVSTASMAQDTPENTIFDITDLEVNVKKEAEIIIDDYEDDRKHYDTESENSYNFDYEPAIKRPCIELSELDVKKKAYIKSASYVYGKYVMRQCPMCDYEFNSAHCWKKHISFMHHLEKPEDLDFKYNEVGAKCKLCDFQTATPRFNGLLDHQISHMPFSHYLKCKLCDWRTKTHSSMNLHLRQYHSDKLEGTTKSLELTVCPYCQQEFASQWYLRKHMIYEHEKTTEDRTCFICLDCGEEFSTNVSLRAHVFEKFAGKTVSDMGFNEVAATADTEAKFICTQCPTVFRKIASSRTLINVREHYMLHLGEPSGKHAYKCRYCDESFRRFDNMRLHICEGLRKVLHTSIGIHPMSKTAFRERLLRRKRQKAKKNEQNELVDFKRDYMKHIRYVCLKCGVSFGKPIHCKRHMFQTHGMNKLDGLDFKKLENEGESDIYECTICEEFTCDFDLNTMLVHARIHTVFDPFQCKFCHTSFAYESEIPRHECIDTDTSKSLPEFKYPKEIPIPNMDSFCPKCKQTYTRASSLTRHMNKAHGMNEPYGLGFEICESNDTEGKVYRCNECENFTTTDKNLRAMLEHARQHFPYESFRCTICKERFRLKEHARRHQCANDTIEVDDKFQDEVLTKTRLNKMGRFCPKCGKTFKKTCVCKNHLNKVHGMDKPEGLGFEKVELDVDTTEETETYRCMECLTYKLPKLDLSLMLEHAREHFPFDSFWCMLCHDRFRLKVEAKVHRCLNALNTGDDDGDNDHTSRTRYPKAFEKLIRKFCPECNTEMSAVKTWRWHLSRYHEMDTLSGLHMKETKGNLVECLICQVQTTHARRQEHRFIHLPFKPFQCRYCLEYFIEIEKAKSHCNECIQAPSEFPDDEEPKKAEATPSKRTPAIRAIISVDLKNNQNQFSPQLKTSVNEKKLNKYYKQTRKRERLVKLDKQSESETSSESENETTNNGICVVLADDHDFAKFVRISCPFCPDTEFESNRLLSHHFYEVHDSFREHFTIHQTNAANCKSCNKYFNVVYKKTMIKHYLSEISATCFCCRLCDKKILYFETMRSHLLDDHQAVIAGQTQQQCSSSSTSSDPLKVTSVDISKVSRTTMAIPTSKTAVFNEFNAYISYACPECNIPFESSEQWHLHINGEHNFFEQHQLNIEATSDGFKRCKQCSVNINGGVLAEQRHKLTHMQYKSFICTLCQHRSTTLGVLTQHFRRRHFAKGTFECCLCPVVLSTSCEQIEHMKNDHDPSEYPPKLCPVCFSMLSSAHSLNTHMELHNPNRELFHCDFCDRSYKYKRELSFHVRSKHTRQEAATT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-