Basic Information

Gene Symbol
-
Assembly
GCA_951828415.1
Location
OX639993.1:39397523-39403000[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.022 4.7 9.7 0.1 1 23 110 133 110 133 0.95
2 16 0.002 0.42 13.0 3.6 2 23 182 204 181 204 0.96
3 16 0.029 6.3 9.3 0.0 1 23 325 348 325 348 0.95
4 16 0.038 8.2 8.9 2.6 2 23 398 420 397 420 0.94
5 16 0.0022 0.47 12.9 0.4 1 23 475 498 475 498 0.94
6 16 0.017 3.6 10.1 2.2 2 23 549 571 548 572 0.95
7 16 0.0055 1.2 11.6 1.3 1 23 666 689 666 689 0.94
8 16 0.32 70 6.0 5.7 1 23 698 720 698 721 0.94
9 16 0.013 2.8 10.4 0.1 1 23 771 794 771 794 0.92
10 16 0.1 22 7.6 4.5 2 23 844 866 843 866 0.96
11 16 0.0004 0.086 15.2 0.3 1 23 935 958 935 958 0.97
12 16 0.21 45 6.6 1.4 1 21 1010 1030 1010 1031 0.95
13 16 0.0049 1 11.8 0.2 2 23 1091 1113 1090 1113 0.95
14 16 0.7 1.5e+02 5.0 2.1 2 23 1163 1185 1162 1185 0.94
15 16 0.0077 1.6 11.1 0.1 2 23 1303 1325 1302 1325 0.90
16 16 0.063 14 8.3 3.7 2 23 1375 1397 1374 1397 0.95

Sequence Information

Coding Sequence
ATGGACCAACTTTTTATGTTCTCAAATGAGTATACTATGGATGATGCCGAGGATGCTGCGAATAGCaggaacaaaaaagaaacaaaaattaaaaacgagcCTGCCGACATTACGGATGACGGGGGCGATGACGATAGCTATATAATGCCAGGGTCTCTATTACAACAAATGACATCTACACCAGATGCAGATGGTGAAGATgataacacaatttttaatttcggtaTTGAAGCAACTTCAGAAGCACGCCAGCCGACAACTACATCGAAACCTTACAATTCAAAGCATCCCCTAGAAATCAATGTGAACTATGATATTGCAATTATGTTTATTTGCCCATCTTGTGGAGATGAGTTTAAAACACAAACCGCCTGGAAGTTGCATATAAATGGAGTGCATGAATATAATACGCGACGTGGATTAAATTTTGTGCCGATAGATAAATTATATCACAGATGTCTTGAATGCAACAAACCCATAGCTATGCATGCTATGGAAAATTTGCTAAAGCATAAATTCACGCATTTGCCACATCGttgtacaaaatgtaaaatCTGTCAACGGCGGTATAAGTATCGACAGGATTTAATTGTACACTTGCGTTTATGCCATCGCCGGGAAGTACTAGCACTGACGGCAAGTGCAAACAGCAAGTACCACAATCAAAGTGACAATAATAGTCCTCAAACTACACCCACATCGGCAAATGCTCGATTAGCGATCATGGACATTAAAGGTAATGCAGTGGACATATTTGAAAACACATGCGACGGTGTTGAGGTAAAAAATGAACCATTTGATCCTGATGACCCAGATGGTGACAATTTGCTAGAGCAATCTacaaataaagctaaatttgcTACCACCTCCATACTGGAAAATGCACTCGGCAGAAGTGCTTCAAAGGCATCCGATGGAAGGcaagatgaaaatgaaaatgctaacGAGAGACGTTGTGAAactcatatacaatatatttgtcCGGTATGCAACACGGAAGTAACAACGAAGAATGAGTGGCTCGAACATTTACAAGAAATGCATAATTTTTGCGCTAAAAAAGGACTGGGATTTAAACAGATTAGTAATGTAACAGTTGAATGTATGGAATGCAAGAGGgttatgCCCGATAAATCTATAGAACAACTGCAGTTACATAAATTCTCGCATCTTCCTTGTAAAACATGGATGCGCTGCAAGTTATGTTTGCGCTCATTCAGTAACCATAAAGATATTATAAAACATTTGCTAAATCAGCATCGATTTGATGATGAGTACGATGCAGATATGGTCGATGAAAGCCAAGATGGTGTTTCATATGGTCTATGCTCTTTTCTAGGCACTGACAATGACGAAAATCCAGATTCCGCTAAAGATAAAGCAAAAAGCGAAATTCGTGATATTTACGAATCGAAAATTGTCTACATATGTCCAAAATGTGGCATAGAGTTTTTCCAAAGGAAAATGTGGCGAAAGCATGTTGTAAAAGAGCATAATTATAacgatttaaaaacattatgttTTGTGGTTCTCAATGAGCATCAGCTACAATGTCGTTTGTGCggtaaaataattacaaatgcaTATGGCGTACAAAATGCACAACAACACTATTTCACACATTTACCACACAAAGCGTATATACGTTGTCGTATGTGCATCAAATCTTATACTGATCGCAAAGGTTTAGTGAAGCATTTGCGTAAAGTACATCATATTAGTTCTAAaacggcagcagcagcagctgctgCAATATCTAGTAAAAACACAGGATCGCCACCCCCAGCATTCCAACAGGTACAAAAATCATCAACACAGATGTCAAAAGTACCACCACGTACAACGCCAGTAAAGGAAATTGTCCGTCATAACGGTGTAATATATGAGATACAATTTCTGgatgaagaaaataatgatACATCCTACGCAATGATGGATGGTGGAAGTAGCGGACTATGCAGTAGCAATGACGGTTTTGCAACACCTACAAAACGACATGTTTGCGCTGATTGTTATTCAACATTTAGTACGGCGCAAGCACTACAAAAACATACTAAAGATCAACATGATTTCAAGAAACCCTCCCAAGCACATGTTTGTACGATGTGTTTTTGTACATTTGAATCGGCTGGAGCTCTACAAGATCATAAATTTAAACATCATGGAAAAAATGCGTCTTCAGCAAATGAAaatgacgatgacgatgatgacGATAAGCTCTTGGTACCTGCTGGGGCTAATGACAATGCCCGAATCAATGACAATTCTGATAATTACGTTACGCAATCAAATATTGATCAATACTTTTGCTAtttatgtccggcatgtggcgACGAGTTTAAGTCACAATACGAGTGGCGCCGTCACATTAACGATATTCACTTCTTCGATCGTCGCTATGAATTGAACTTTCGACAAATggataaatttcattttcagtgtttaGAATGTAAGGAAGTCGTAAACAGTGCTAAATTAAAAGGTCTGCAAGACCATAAATTCCGTCACTTGCCGTACAAGTTGTACATAAAATGTCGCCTCTGCAGCACATGCTATAACCATAAACCCAATATGGTTACACATCTGCGTATACGTCACAATTTGGTCGAACCAAATTCAAGTCCCTCAATATCACCGGCTCCACAAATGCGCTTTAATGCAAGCAACTATGAAATATCaacaccatcaccatcaccatcacaATCACAATCAACCACTAAGTCATTTAACACTTCTTTCAGACCTTTAACGACCGAGGACATTATTTCGAATCACAATGCTGTCGATCACGAAACAATAACCTATCGCTGCCCGCAATGTAATGAAGCATTTGATACACACGCCCTTTGGCGCCAGCACATTGTCACCGAACACGATCTAAATAGTCGACATGGTTTGAATTTCCGTCAACTGGATGCGCATCACTATATTTGTTTGGAGTGCTACAAACGCGTGACAGTGACGCACACAAAGGGTGCAATTGGCCAATTACAGTCGCATAAATTCCGCCATTTGCCATATAAATCCTTTGTTTGCACGAAATGTCAAGGTCTATTTGTACGCAAGCAAATGTTCTTCAAGCATCTAAATCGTGAAACTAATAGATGCCCATTATGGGGTGATGAGCCTTCAccaaatttaaacaacaaaataaaaaattcttctatGATTATGGGGCGTACAATGTCTGCACATTATGCACATCCCAGTCCACGGGGAAAGCATCTCAACTTCTCGGTCACATCCAAGGAAAAATGCCCCTACATTATACAATGTCCGCAATGTGGCATCAAATTCGAAAAATGGCATCCATGGCGTGAACACATCGAAAAAGTGCATGCTTTGCATAGTATGGCAtcactaaaattcaaaaagatcTCCGATCATTTGCACATTTGCATGCAGTGTAAGGAGCGCGTCACTGGCgccaatttcataaatttacaaACACATCGTTTCAAACACTTGCCCTATGGCACCTATTTGCATTGTCGCTATTGTGATGTAAGATATTACTATATGATCAATATTATCAAACACATGAAGCAAAAGCATCCATTTCATGGCATGGAGCAGCTCGAATTGCAATTGGAGAGCGCGGGTAATGAAGGGGCCGCCGACTTGTCTCCAGGCACAGTCGGCATGGAGGCTGATACGGAGTGCGATTCAAAAGAGGGGCAGGATAACGACAATACGACCAATGCGGATAATGATAACCAACTGGGGGACGAACACAAAGCTGTGCTCATTgaggatgatgatgatgacgggGATAATTATGGTGGGGACGATGATGATAAACGTGCTGAGAAAGCGCTGGCAGTTCGAGATATACGTGATATGGAGTATGGTTTGGGTTTTGGGTCCGAATCCGAATCCGAATCCAAAATAAATTCGTATATAATTCAATGTCCGCAATGTGGTATTAAATATGATAATTGGCATTTGTGGCGCGAGCACATCGGCGAGGCACACTCCTTGAATGATCGTCAAGCGCTTAATTTcacgaaaatatttgattggTTGGAGGAGTGCAACGAGTGCAAGGACCGTGTAAATGCGACATCCTTCTTCATACTGCAAACTCATAAATTCAAACATTTGCCGTATGGCAACTATTTGCATTGTCGCTACTGTGACATGAAGTTTAGCAACATGCAGCACATTGTTGCACACATAAAGTCGAAGCATCCAGAGCAAGCAGTGCAACAACAGCATGAACTAAGCAAAACTATGGGCGTTGTATTACCAGAGAATGAAAATGAGATGAATGAGGAAGAGGAGGACGATGAGCAGAACGATAAGTCAAATGTTGCGGTTGTTGTGAAGGATGGTGGTGATGCGAAGATCGACGACGATGATGAAGATGACGAAGGCGATGTTGAAGaagatgatgacgatgatgttGACGATGATGGAGACGTAAATGAAAATGATGAGCAAAATAATGGTGGCGCTGAAGTTGTAGGGCGCATGGATGTTGACGATAAAAGTGATGATGAATTCGAAGATGGTGAAGATGAGGATGAAGAAGAAAACGAAGATGATGACGACGACGAAGATGACGATGtcgttgatgatgatgatgatgatgatgatgacgacgaaGGGGATGATGAGATAGAAACTTATGGTAATACAGAAAATATAGAACCAGCTCACGAaagagaaattacaaaaaattgtggATCCCGCGGTAGTATAGTTGAAGCCAACGAAGAAGCCGATGAATCAAATGAACAATTCGTGCtgggttaa
Protein Sequence
MDQLFMFSNEYTMDDAEDAANSRNKKETKIKNEPADITDDGGDDDSYIMPGSLLQQMTSTPDADGEDDNTIFNFGIEATSEARQPTTTSKPYNSKHPLEINVNYDIAIMFICPSCGDEFKTQTAWKLHINGVHEYNTRRGLNFVPIDKLYHRCLECNKPIAMHAMENLLKHKFTHLPHRCTKCKICQRRYKYRQDLIVHLRLCHRREVLALTASANSKYHNQSDNNSPQTTPTSANARLAIMDIKGNAVDIFENTCDGVEVKNEPFDPDDPDGDNLLEQSTNKAKFATTSILENALGRSASKASDGRQDENENANERRCETHIQYICPVCNTEVTTKNEWLEHLQEMHNFCAKKGLGFKQISNVTVECMECKRVMPDKSIEQLQLHKFSHLPCKTWMRCKLCLRSFSNHKDIIKHLLNQHRFDDEYDADMVDESQDGVSYGLCSFLGTDNDENPDSAKDKAKSEIRDIYESKIVYICPKCGIEFFQRKMWRKHVVKEHNYNDLKTLCFVVLNEHQLQCRLCGKIITNAYGVQNAQQHYFTHLPHKAYIRCRMCIKSYTDRKGLVKHLRKVHHISSKTAAAAAAAISSKNTGSPPPAFQQVQKSSTQMSKVPPRTTPVKEIVRHNGVIYEIQFLDEENNDTSYAMMDGGSSGLCSSNDGFATPTKRHVCADCYSTFSTAQALQKHTKDQHDFKKPSQAHVCTMCFCTFESAGALQDHKFKHHGKNASSANENDDDDDDDKLLVPAGANDNARINDNSDNYVTQSNIDQYFCYLCPACGDEFKSQYEWRRHINDIHFFDRRYELNFRQMDKFHFQCLECKEVVNSAKLKGLQDHKFRHLPYKLYIKCRLCSTCYNHKPNMVTHLRIRHNLVEPNSSPSISPAPQMRFNASNYEISTPSPSPSQSQSTTKSFNTSFRPLTTEDIISNHNAVDHETITYRCPQCNEAFDTHALWRQHIVTEHDLNSRHGLNFRQLDAHHYICLECYKRVTVTHTKGAIGQLQSHKFRHLPYKSFVCTKCQGLFVRKQMFFKHLNRETNRCPLWGDEPSPNLNNKIKNSSMIMGRTMSAHYAHPSPRGKHLNFSVTSKEKCPYIIQCPQCGIKFEKWHPWREHIEKVHALHSMASLKFKKISDHLHICMQCKERVTGANFINLQTHRFKHLPYGTYLHCRYCDVRYYYMINIIKHMKQKHPFHGMEQLELQLESAGNEGAADLSPGTVGMEADTECDSKEGQDNDNTTNADNDNQLGDEHKAVLIEDDDDDGDNYGGDDDDKRAEKALAVRDIRDMEYGLGFGSESESESKINSYIIQCPQCGIKYDNWHLWREHIGEAHSLNDRQALNFTKIFDWLEECNECKDRVNATSFFILQTHKFKHLPYGNYLHCRYCDMKFSNMQHIVAHIKSKHPEQAVQQQHELSKTMGVVLPENENEMNEEEEDDEQNDKSNVAVVVKDGGDAKIDDDDEDDEGDVEEDDDDDVDDDGDVNENDEQNNGGAEVVGRMDVDDKSDDEFEDGEDEDEEENEDDDDDEDDDVVDDDDDDDDDDEGDDEIETYGNTENIEPAHEREITKNCGSRGSIVEANEEADESNEQFVLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-