Basic Information

Gene Symbol
basR
Assembly
GCA_951828415.1
Location
OX639993.1:21120414-21124582[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.094 2.2e+02 3.9 0.0 22 46 222 248 205 248 0.75
2 5 5.2e-12 1.2e-08 36.7 0.1 1 44 254 298 254 300 0.94
3 5 2.3e-06 0.0055 18.6 0.1 2 46 309 357 309 357 0.89
4 5 1.9e-09 4.5e-06 28.5 0.0 2 46 364 409 363 409 0.92
5 5 2.1e-09 5e-06 28.4 0.0 3 44 417 459 416 461 0.96

Sequence Information

Coding Sequence
atgctTTCTATTGATGAAGAGGAGAGTTCTTCTTCTGAGGATAGCATAGTACAAgAGCTGGATTCGGATTTTGAAAATGAACCCAATGTCGACTATACGGGATTCAGTGCCAAATATATGGAGGAGATCACAAGTTTATTGGGCGCACACAGCGAAGTGAATTGTGAAAATGCTTTGCAGATCAACCAGGAAATGCAACAACGTTTGCACGAGGTACGAAAGCGTTTACAAACCTTGCTGCAAGCCGTCCAACAGCGATACCTCTCAAATGAGCAACGCCTGAAGCTGAATATGGGGAAAAAGAAAAGAGGATTTGGCATACGTGGCGCATACCTTAAAGGTGGaactttcttttttaaaggaaatatgttCTTCAAAGATCTAAATTGTCGCAATTGCCCAAACAATCAGGATTACGAATATCGCAAGAATGTTGAAGGTGAAATGTTTCCAATGGACTTTGAGCTATGCAGTCGCCATGTCTGGTCTTTATTAGACAAGAAAGCTGTGGTGCAAGCGGTGAAAGAACAGGCAATTGATTATTTAGCTGATTGCAAATTTCGAGATAAGAACAATAAATCGGAAAATCTTACACTTCAAATAAAAGTGCATACAGAGAAATTATCAAACTTGTTGACAAAAGTAGATGATAAATTCGAAATTGATTGGGAGCAAGTGTCCGCTCACAACTTAAACTATCGGCATTCACCTAGCAGTTGTAAAGCGATGTGGCTAGTGTACTTGCATCCCTCATTGAAACGAAGTGCATGGTCTGTGGAAGAAAACAAACAACTCTTGCAAGCAGCACAGCTgcataattatcaaaaatgggAGAGCATAGCGAAAGCAGTTGGGAAGCGTTCTGATTATCAATGCTTCATACAATATCAGACgtgtgtttgttttatggatacacaACGTTGGGGACGTTGGGATAAACGTGATGACACAAAGCTGCTTCAATTGATCGAGAAAAAATCAATGAACGGTGTGATAGATTGGAATGCAGTGGCCGTATATTTTCCGCACAAGCCAAAGAAGTCATTGCATCAGCGCTACGCATACTACCTGGATCCAAAGCTTAGTCATGAACCATTTACGCCCGAAGAGGATCTCATATTGCTGGCTGCTGTCGAAGAATATGGTGAGAAATTCGCTCTATTTCCGCGCACACTTTTCCCAAATCGCTCAATAATACAGCTGCGCATGCGTTATAGAAATACGCTACAAAGTCGCCATAAATTAGCTCCATGGACGGTGGACGATGATAGGAAACTTATGGAATTTGTGTCCGAGCACGGAACATCGGCATGGTTACGTTGTGCTGAAAAACTTGGAAACCACAATCGCATTAGCTGTCGTACACGTTTCCTTACCATACAGAAGTTCTTTGCCAAAAATCCAGAAGCGGTACTCGAGGATATACCGCGAAAAAAGACATGCGTTATGAAGAACAGTGTGATAACAACGCAAAACTGGATGGCAAAAGTGGCGGAATTGCGTGAAAATCCTGACACTGTACTTGTACCacccaatcgtaaggaaactaAGATAAGGGAACATCACAAAAAgtcacagaaaaaaattaaaaaaatagaatcccAAATTGAAGCTCTACCAAAATGTGATATTCAAACACGAGggacaaaaaagagaaaaaagcgCAAATTTCTATATGTGGAACGCTTACGTGCTGTggaacataaaatttataactttttcaagTATGCCTACAATTTTAGACTAGGCACAGACGTGTGCACCAAACCGCCCAATACAATTTTACGAACAATTGCAACATGGCTGGATTTTCGACCAGACCCCACGCTTCCATATGTTGTTGATGAATTGCTTTCTCCCAATATCGGACGgagttgtaaatatttactgtGGCAACAGAATACGCCGGTATCAGATAACGGAACATACTGCCAGACTCTACCCCCCAGTTGGTCAACAGCAATGGCATTTCGGGCACTTTGTGTGCAAGCGGCACAAAAACAATTGGAGAATTCGATAGAAGAAAAAGTCATCGTAGATAACAAACCgaatgaaattgaaaagtatGTGGCTTTACAAAGATTTCGCAAACGTATGCACACATTATTTTATCAAACAGCGTTACTAAGTCGACTACAACCGTCTCGATTCAGGGAACTTGCGCAAAGCACCTCTTCAACAGTAACCGCAGCAGAATCGACAATGACGGTTTATAGTGCAGAAGATACTATAACATCTGCATATGAAACATTAGCagaaaaatcagaatttgattTGGCACGTGTAAAGGATGAATATCCATCAGAATATGAGACAAATGTTGAAGTCGTTGAACAGATAGCGAGTGATAGAGAGCCGATAGCTAAACCCTTGCGAAcgcaaaaaaaagttcaaagaaaaTCGAAAACTGTCGCGCGCAAAAGAAAACTACAAACAGCTCCAGCAACGACAGTCCTTTCGGAGATTGTATCCGCAGTAAACGAGCAGGCTGAGAATGTCGTTTATGAAATTACCTATATTGGTAACTCTACGTTGGGTCCCTTAAAACCAGATGTCCCATTACAAACCGACACAAGTATTTCTGTGGTTTCGCaaagtttaccaaaaacttGTATACCGCCATCTGAAGCAGAGCCTCCCGAAAAACGCTTTGGCGTTGATGCCGCTAGCTGTAATAAAACTGATTTTAAGTTGACAAATATTAAGACTGAGTTTgagttataa
Protein Sequence
MLSIDEEESSSSEDSIVQELDSDFENEPNVDYTGFSAKYMEEITSLLGAHSEVNCENALQINQEMQQRLHEVRKRLQTLLQAVQQRYLSNEQRLKLNMGKKKRGFGIRGAYLKGGTFFFKGNMFFKDLNCRNCPNNQDYEYRKNVEGEMFPMDFELCSRHVWSLLDKKAVVQAVKEQAIDYLADCKFRDKNNKSENLTLQIKVHTEKLSNLLTKVDDKFEIDWEQVSAHNLNYRHSPSSCKAMWLVYLHPSLKRSAWSVEENKQLLQAAQLHNYQKWESIAKAVGKRSDYQCFIQYQTCVCFMDTQRWGRWDKRDDTKLLQLIEKKSMNGVIDWNAVAVYFPHKPKKSLHQRYAYYLDPKLSHEPFTPEEDLILLAAVEEYGEKFALFPRTLFPNRSIIQLRMRYRNTLQSRHKLAPWTVDDDRKLMEFVSEHGTSAWLRCAEKLGNHNRISCRTRFLTIQKFFAKNPEAVLEDIPRKKTCVMKNSVITTQNWMAKVAELRENPDTVLVPPNRKETKIREHHKKSQKKIKKIESQIEALPKCDIQTRGTKKRKKRKFLYVERLRAVEHKIYNFFKYAYNFRLGTDVCTKPPNTILRTIATWLDFRPDPTLPYVVDELLSPNIGRSCKYLLWQQNTPVSDNGTYCQTLPPSWSTAMAFRALCVQAAQKQLENSIEEKVIVDNKPNEIEKYVALQRFRKRMHTLFYQTALLSRLQPSRFRELAQSTSSTVTAAESTMTVYSAEDTITSAYETLAEKSEFDLARVKDEYPSEYETNVEVVEQIASDREPIAKPLRTQKKVQRKSKTVARKRKLQTAPATTVLSEIVSAVNEQAENVVYEITYIGNSTLGPLKPDVPLQTDTSISVVSQSLPKTCIPPSEAEPPEKRFGVDAASCNKTDFKLTNIKTEFEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-