Apur003144.1
Basic Information
- Insect
- Anomoia purmunda
- Gene Symbol
- PGBD3
- Assembly
- GCA_951828415.1
- Location
- OX639993.1:52085637-52091749[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-07 0.00024 22.6 0.0 3 40 17 54 16 59 0.91 2 2 1.2 9.7e+02 1.5 0.0 23 39 422 438 416 443 0.80
Sequence Information
- Coding Sequence
- ATGCCTCgaaattatattctaaaaaaaccACTGCCGTCATACTCATTAGATGACGTTGCCAAGGCAGTCAatgatgtgaaaaataaaaacatgacctTCAGGGCAGCGCAGGAGGCTTATGGAGTACCTGTATCTGTTATTTATAATAGGATAAGTGGCAGGAAAAACTCACTTGAGAAAATTGGACAAGGCCGGGGAAATGCATTGACATTAGAAGTCGAGAAAGAAATTGTTAAGCTCGTCCTCCAACGATCTTCAAGCGGTTATCCTTGCGATAAAGAAGAGTTGCGGGATTTGATTTCCCAGTATGTTATTAATAACAACCTAAAGACCccttttaaaaactcaaaacccGGTGAGGAGTGGTATCGAAACTTTATGAAAAGACATCCTACACTATCCCTTAAGAAACCGGAGCTACTACAGAAATGCCGAAAAGATGCTAGAAAACCTGAAattatttacgatttttataataagttaaaagaCGTTGTAACGATGCATGGGTTAGACGAGGAAAAGTCGAGCTTCGTATTTAATGCTGATGAAAGTGGATTTTGTAGTGATCCTAGCAAGCTGAGGGCAATAGGAGAAAAAGGAGTTACACTAAGTAGGCTTACTGGCGGATCAGGACGTGTATCAACCACGGTTTTGGCATGTGTTTCAGCAGATAGCTTTGCTTTGCcccctttaattatttttaaaggcgCAGCAGTCCAAGCACGATGGACCAATGAAGAAGCGTATCCTGGGACTTTGTATGGAGCTTCGAAGAACGGTTGGATGGAAGAACCACAGTTCTTCCATTGGTTTATCAACGGGTTTATTCCTCATATTGTACGTCTGagagcagaaaaaaaactttctgaTCAAACTGCTTTGTTACTCTATGATGGGCATTCCAGCCATCCGTTAGACAAAGCTGTTTTCGGTCCGGTTAAGAGGGCTTGGGACAAATTGTTGGTTAGACATGGAAAAGATATGATAGGCAAAGGTTTGTTCCAACTATCAAAGGCCaactttgttaaattattgGGACAAGTTTGGAGGAGTGCCCTGGTTGCAAACAATATTGTGGCTGGTTTTGTTTCAACTGGAGTCTTTCCGGTTGATGCATCAAAGTTTCCAGAAACAGAATTTAACCAATTGGAACTTAAGAGGTATAAGGAAAATCTTGAAATAATCCCAGAAGCTAGTGAAAATGTAGAAGTACTAGCACAACCTTTATCTTCAAATGCTGCTTTATCCGTTCACACTGAAATTGCCAATTTATTCGCAGTTCCTCATAGTTCTCTTAACGCAACtcctaaaagaaaaattactcctCGTTTGAAGCAATTAAAATATGGAGAAATATTGACATCTGACGAGGTTTTGCAATGCTTAAAAGAAGCTGAAGAAAAGAAGAGGTTAAAAAGTGAGCCAAAAAAGAAGAGTCTGAAGAAAAAGCAAACAACGAAAAAATCTTTAGCTTCAAAAAAGAAGGTGCTTGTATATTCATCTTCTGAAGACGAAAATCTGAATTACACGCTAGCAGATGATGATTTAGCTGACATAAACTGGGGCGATGAAGGAAACCGAGAAGATCCTGATGAAGTAGAGATGATGGAAGTCAAACCAATTGAAGACCTTGAAGTGGGAGAATTCATTTTAGCATCGTTTAAGGGAGGAAAAAGAAActcgatatattttaaatacgtaTGCCGCATAGAAATGGTACATATTAGAGATGCAGAAATAAAAGTTCAAGGTCTCGCTGCTCTTATTCCTTCGAACACTATAtttaaagttatagaaaaagatATTAGCTTCATCAAACTATCTCAAGTCGTTGCTATGCTTCCACCGCCAAAGGAGACACTGGATGATAATGGTTCTCAGCTAAGAGCTTCGGCAGAGATCGGATACATGTCCTCTGACAGTGACGACGACGACGCGCCTTTGTCTTTATTGGCTAAAAGGCGTCGAACCACCGAGGAACCGATCACTGAAGAACGTCAACCTGAATCTTCGACATGTAGTTTAGCTCCAATCATTAGCAGCCCGTCAGCCGTTCCTTTTGTTGATCCAACCATaacaaacaatcaaaaatataCTTGGAGAAATCGCCAGAATCCACGCGCCCAATTAGAATGGCAAGAAAACCAGGGTCCAAGATACCCTCAAACGCCTATGTATTATTTTGATTGTATGTTTGGTGATGGCGTCATAGACTTATtggttacatatacaaatatttacgccactcaaaaaaacaaagtggGTAATGTAACAAGCAGCGAGCTGAAGTGCTTTCTGGGTATTCTCCTTTACAGTGGATATATTGTGGTTCCCAGGAGATACATGTATTGGGATAAATCATCAGACACTGATTTTAGTATTGTTTATAACGCTATGTCAAGGGATAGATTCACATTTATCATGACCCACCTTCACTGTTGTGACAATACTGAAATAGCTACCGAAAGCGACAAATTTGCAAAGCTGAGACCACTTTTCAATATGCTGAACGAAATCTTTCCCAATATGGCTCCTTTAGAAGAAGTTTACAGTATTGACGAGGCTATGGTGCCTTACTACGGAGGACACAGCTGTAAACAATTTATACGGGGAAAGCCAATTAGATGGGGGTATAAGTTCTGGGTTGGTGCGACTAGATTGGGATATGTACAATGGTTTGATCCATACCAAGGTCATGCAGCAATTATTCCATCGGTTTATAGGCAGTTAGGTCTAGGAGCTGTAGTCGTTTTGCGTTTTGCTGATCATTTGCAATTTCGTCACCCAGATGCACCTTTTCACCTGTTCTTTGACAACTTCTTTTCTTCTGTTCCTCTCTTTcacgaattaaataaaagaggaCTCAAAGCCACTGGAACGATTCGCGAGGATCGTACAAAAAAGTGTCCTTTGCCGTCCAATAAAGAGTTCAAGAAAACCGAAAGAGGCACATTTAAGTACAAGTCTAGCCAACCAGGGCATATTTTGGTCTGTAAGTGGAATGAGAATAGCGTGGTGACAGTGGCATCAAATTCTCAAACCATAAGGCTAGTTTTCATTAGGGCAAAATCACTGACATCAAAAACTGTCTTAACTGACAATTATTCATTTGGTGTCAAATGCGTTTTCATTACATCATAA
- Protein Sequence
- MPRNYILKKPLPSYSLDDVAKAVNDVKNKNMTFRAAQEAYGVPVSVIYNRISGRKNSLEKIGQGRGNALTLEVEKEIVKLVLQRSSSGYPCDKEELRDLISQYVINNNLKTPFKNSKPGEEWYRNFMKRHPTLSLKKPELLQKCRKDARKPEIIYDFYNKLKDVVTMHGLDEEKSSFVFNADESGFCSDPSKLRAIGEKGVTLSRLTGGSGRVSTTVLACVSADSFALPPLIIFKGAAVQARWTNEEAYPGTLYGASKNGWMEEPQFFHWFINGFIPHIVRLRAEKKLSDQTALLLYDGHSSHPLDKAVFGPVKRAWDKLLVRHGKDMIGKGLFQLSKANFVKLLGQVWRSALVANNIVAGFVSTGVFPVDASKFPETEFNQLELKRYKENLEIIPEASENVEVLAQPLSSNAALSVHTEIANLFAVPHSSLNATPKRKITPRLKQLKYGEILTSDEVLQCLKEAEEKKRLKSEPKKKSLKKKQTTKKSLASKKKVLVYSSSEDENLNYTLADDDLADINWGDEGNREDPDEVEMMEVKPIEDLEVGEFILASFKGGKRNSIYFKYVCRIEMVHIRDAEIKVQGLAALIPSNTIFKVIEKDISFIKLSQVVAMLPPPKETLDDNGSQLRASAEIGYMSSDSDDDDAPLSLLAKRRRTTEEPITEERQPESSTCSLAPIISSPSAVPFVDPTITNNQKYTWRNRQNPRAQLEWQENQGPRYPQTPMYYFDCMFGDGVIDLLVTYTNIYATQKNKVGNVTSSELKCFLGILLYSGYIVVPRRYMYWDKSSDTDFSIVYNAMSRDRFTFIMTHLHCCDNTEIATESDKFAKLRPLFNMLNEIFPNMAPLEEVYSIDEAMVPYYGGHSCKQFIRGKPIRWGYKFWVGATRLGYVQWFDPYQGHAAIIPSVYRQLGLGAVVVLRFADHLQFRHPDAPFHLFFDNFFSSVPLFHELNKRGLKATGTIREDRTKKCPLPSNKEFKKTERGTFKYKSSQPGHILVCKWNENSVVTVASNSQTIRLVFIRAKSLTSKTVLTDNYSFGVKCVFITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -