Amar053233.1
Basic Information
- Insect
- Anisolabis maritima
- Gene Symbol
- prdm10
- Assembly
- GCA_010014785.1
- Location
- JAAAKE010000394.1:11254-23821[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00023 0.075 15.3 0.1 2 23 591 612 590 612 0.96 2 12 4.6e-06 0.0015 20.7 2.8 1 23 645 667 645 667 0.98 3 12 0.0088 2.9 10.3 2.8 2 23 675 697 674 697 0.96 4 12 8.5e-05 0.028 16.7 4.5 1 23 765 787 765 787 0.98 5 12 5.6 1.9e+03 1.5 2.0 1 23 795 817 795 817 0.95 6 12 0.0046 1.5 11.2 0.2 1 20 823 842 823 845 0.94 7 12 0.00013 0.042 16.1 1.1 1 23 851 874 851 874 0.98 8 12 0.00031 0.1 14.9 3.1 1 23 879 901 879 901 0.97 9 12 7.9e-07 0.00026 23.1 0.9 1 23 907 930 907 930 0.95 10 12 0.0016 0.53 12.7 1.1 1 23 996 1019 996 1019 0.95 11 12 0.0002 0.065 15.5 2.2 1 23 1041 1064 1041 1064 0.97 12 12 0.0086 2.9 10.4 2.2 3 23 1101 1122 1101 1122 0.97
Sequence Information
- Coding Sequence
- atggaTAGATCAAGCAAAGAAGTTTCTTCAGTAGAACTCGATTGGAGCAATAGCAATGAAGCTATGGATTCACGACCAGCTTCACGCTTTTTATTTCGCTCCATGCGCAGcaatACTGAATTTGTAGACCTGGCAAGTTTTTCTGATTATGATCATACGTCACTTAGTCCACTTGCTTTTCCAAACGATCATATTGATGTAAGTCCACTATCAAATGAATGTCAGCCAAATCCAAATAATTCAGATGATGTGGCCACAGTGGAAGAAGTTATTGCTGCGGCTGCTGCTGCTTCTGAACTTGGTCTCACTATGAAACTTGAAGATGGCACATTTAATACAACTTCCGATCCTCTAGATCCTGGGGGATTACTAACTAAACCCCTTACACCCGAAGATCTTGTCaatgatattaatgaaattgaaacacAAAATGTTTTACTTCCTAATGAAGATTTACAAGTTAATTTGATGAATTCTGCTTCTATGGATAAggcattttctttattaggaGCTCAATGTTCAGATTTATTACCAAATGGCTTATTACCTGCGACTATGTCTTCTAGAATTGAACATGACACTCAAATATCAGACTTGGAACAACCAGTAGTtcagctaccTGGAGGATGGTCTCAAGAGGATTTACAACCAGCACCCCCACCGCCCCAAACATTAGCTCCTCCTCCACCTCAACCGATGACACAAATACCCTCAACATTGCCACCTGCTAGTCGAGTTCAACTAATGATCGCTACCCCTGATGGAAGTACTATGGCATATAGCTTGGATGGAGCATTTCCTTCTGAACAGCTTGGCTTGCTAGCTTCGGCTCTTAAACAAGAACTGTTAACCCATTTAGCGTCGCTTGTACTCAACGATGCATCGCTTCCGGAAACTGGTCCTCCAGAAACTCCATCACATCCAGAAGAAGAGCCTCCATTAACTCCGCCACATCCAGGAGAAGAACCTCCTCCACCTCTTCCGGAACTCCCTTTAGATACAGCTGCAACTCTTGAAGATATGAACCCTACTCTTAACGTTGATGTTGGTGTTGGTGTAACTGCCCCTGTATCCAACGaattattattacttcctCTGGATAACGCTGCGGACTATACGAATTTTTTATCGgaaaatgatacaaaaattaatgaaaatgttgaGACGTTTCCTCTTGTAAAAAATCGCCGTTCGAAGCGCTTAATTCAAGagcaagaaaataaacaagttgttgCCACTAATGATTTTAAAGCGCATGATATTGAAGAAACTGATTTGACTGATATCCAACGGATCACAGACAAAGCAGTGCCAGCAAGAGCTTGGGCCACACTTCCTATATCTTATTTAGCTATCAATAAACTATCAAGCTCTACTAAtgcaggGTATGGAGTTTTTGCAAGAAGAAGTATTCCCAAAAGAACTCAATTTGGCCCTTTAGAGGGAGCTAAGATAACTATAACGGATCCTTTAAATCTTATTGACAACTCCTCAGAACTAAAGTTAATTGTTGAAGAAGACACCGGGCAGTTATTTCATGTTGACATATCAGACGaaaATGCATCGAATTGGATGCGCTTCGTTCGACCAGCAAAATCGGCACGCGAACAAAATGTAACATTAACCCAACAAGGACGTTCTCTTTATTTCATAACAACTCGTCCAATTTATCCTCGTCAAGAGCTTAAAGTTTGGTATAGTGGCACATATGCCACCCGACGTGGTCTTCAAATGTTATCTCTCCCTTCACCTAATGACAAagATATGTGGCCATGTTTCGaatgtaatgaaaaatatcCCACTTCTATGGATTTACAAAAGCATTTGAATGTCCACGATGCCGaaaggggTGAAGATGAAGCGAAGTCCAGACGTAAATCTGgtcgatttcttaaaaaaaataaaaagtttaaaagcgaaaaacaatgtCGTTATCAATGTCATATTTGCTCCCGTTATTTTCCTCGAAATTATAGTCTTAAGAGGCATTTAATTATCCACAACAACAGTGAAGCCAGAACATCttgtgaaatttgtaatattaaattcccTCATATTTACagcaaaaataaACATATGAAGAAATATCatccaaatattataaatactaaaacaCAAAACTTATCTTCTAACACTTTACGAATTCAAGATACTAAGATTATGCAGAATACTTCAACACAAgtttctaATGAACTTGAAAATGCATCTTGCTTGTCTACCCCCATGACTTCAACTacgaatttaattcaaagacaaaataaaaatcgaaataatgCAAATCCTGCAAAACCTCATAAATGTCGACAATGTTATAAAACATTTACATCTGAAGATCGACTTCAGaaaCATATGATGGTACATggagaagaagaattaaaaccTTTTCAATGTTTAGTTtgtatgaaaagatttttaaataattcagccCTATCTTGTCACGTTAAAGTTCATAcagataaacaatCATATCAATGCCCTCTCTGTAACAAAACCtatgatcaaatattaaaacttcGAGAGCATATTCCTGAGCATTGTGTAAACGGTCGTTATCCATGTAATCAATGTAATCGGaaatttgatGAATACAGTGCTGTTCGTAAACACATACGATCATTCCACAGTGATCGGAAACATAGCTGCACATATTGTTCTAAATTATTTCCATCCGTTGACAAACTTCGAAAACATATGTTacgtcattcGGATCATAGAGAATTTCTTTGTGCTGATTGTggtaaacaatttaaaagaaaagataaactCATAGAACACATGAGGCGTCTTCATTCAGCTGAGAAAGAAGcagctttgaaaaataataacaacagcatcaataataataataatattaaaacacctGTTTATACTGTCACAAGTCAAGTTGCACCGCCGGATTTAAATAgcgcattaaataataataataatattagtcaGAAAAGGACCAGATCTCAAattaACCCACATGAATACCAAAGATACATTTATAAATGCCACTTATGTGTTTTGGGCTTCAAACGCCGAGGGATGTTAGTAAATCATTTAGCCAATCGACATCCCAACATCAAACCAGAATCTGTACCAGAACTGAATTTGCCAATACTTAAAACAACTCGGGACtattattgtcaatattgtgaaaaggtatataaaagCAGCTCTAAACGTAAGGCTCATATTCTTAAAAACCATCCTGGAGCAGAACTACCTTTGAGTAATCGAGGAGGAGGTGATATGAGCAATATGCCGAATCCTTCATATTCTCAACCAGCTGGATCGGTGACCAGTTCAGCCCATGGATGTGCTTGGTGTCACAAACAATATGCGTCCAAAGCAAAACTTTTACAACATCAGCGAAATAAACATCAAGACCTTTTGCCATCCGATCAACAGGTTCCACGAATGGCGAGAGTTAACCAGCCAGAACcagaattaaattcattaatctttccccaaacaataaatttctttccagGTGAACTTTCCATGGGAGAACAAGTTCTGGATTTGGGCTCTACTGGGCTACTCATCGATGCTGCAACTCTTTCTGCACTTTCAGGCACTCCACCTGAAGATTTGTTTCGTGTTGTGGCTGAACTCGGCCGTTCATTTTATAATCCACGTTGA
- Protein Sequence
- MDRSSKEVSSVELDWSNSNEAMDSRPASRFLFRSMRSNTEFVDLASFSDYDHTSLSPLAFPNDHIDVSPLSNECQPNPNNSDDVATVEEVIAAAAAASELGLTMKLEDGTFNTTSDPLDPGGLLTKPLTPEDLVNDINEIETQNVLLPNEDLQVNLMNSASMDKAFSLLGAQCSDLLPNGLLPATMSSRIEHDTQISDLEQPVVQLPGGWSQEDLQPAPPPPQTLAPPPPQPMTQIPSTLPPASRVQLMIATPDGSTMAYSLDGAFPSEQLGLLASALKQELLTHLASLVLNDASLPETGPPETPSHPEEEPPLTPPHPGEEPPPPLPELPLDTAATLEDMNPTLNVDVGVGVTAPVSNELLLLPLDNAADYTNFLSENDTKINENVETFPLVKNRRSKRLIQEQENKQVVATNDFKAHDIEETDLTDIQRITDKAVPARAWATLPISYLAINKLSSSTNAGYGVFARRSIPKRTQFGPLEGAKITITDPLNLIDNSSELKLIVEEDTGQLFHVDISDENASNWMRFVRPAKSAREQNVTLTQQGRSLYFITTRPIYPRQELKVWYSGTYATRRGLQMLSLPSPNDKDMWPCFECNEKYPTSMDLQKHLNVHDAERGEDEAKSRRKSGRFLKKNKKFKSEKQCRYQCHICSRYFPRNYSLKRHLIIHNNSEARTSCEICNIKFPHIYSKNKHMKKYHPNIINTKTQNLSSNTLRIQDTKIMQNTSTQVSNELENASCLSTPMTSTTNLIQRQNKNRNNANPAKPHKCRQCYKTFTSEDRLQKHMMVHGEEELKPFQCLVCMKRFLNNSALSCHVKVHTDKQSYQCPLCNKTYDQILKLREHIPEHCVNGRYPCNQCNRKFDEYSAVRKHIRSFHSDRKHSCTYCSKLFPSVDKLRKHMLRHSDHREFLCADCGKQFKRKDKLIEHMRRLHSAEKEAALKNNNNSINNNNNIKTPVYTVTSQVAPPDLNSALNNNNNISQKRTRSQINPHEYQRYIYKCHLCVLGFKRRGMLVNHLANRHPNIKPESVPELNLPILKTTRDYYCQYCEKVYKSSSKRKAHILKNHPGAELPLSNRGGGDMSNMPNPSYSQPAGSVTSSAHGCAWCHKQYASKAKLLQHQRNKHQDLLPSDQQVPRMARVNQPEPELNSLIFPQTINFFPGELSMGEQVLDLGSTGLLIDAATLSALSGTPPEDLFRVVAELGRSFYNPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -