Basic Information

Gene Symbol
znf423
Assembly
GCA_010014785.1
Location
JAAAKE010007324.1:14566452-14576452[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.16 54 6.4 5.9 1 23 3 25 3 25 0.98
2 19 1.2e-06 0.0004 22.5 1.4 1 23 31 53 31 53 0.99
3 19 1.1e-05 0.0036 19.5 0.3 1 23 59 81 59 81 0.99
4 19 1.6e-06 0.00053 22.1 0.2 1 23 108 131 108 131 0.97
5 19 8.9 2.9e+03 0.9 0.1 9 23 220 235 215 235 0.90
6 19 0.046 15 8.1 4.4 1 19 272 290 272 295 0.89
7 19 0.38 1.3e+02 5.2 0.1 3 23 375 395 374 395 0.98
8 19 0.031 10 8.6 0.3 3 23 442 463 440 463 0.92
9 19 2.4 7.8e+02 2.7 0.0 10 23 514 528 513 528 0.93
10 19 1.5 4.9e+02 3.3 1.2 1 23 547 569 547 569 0.93
11 19 0.0057 1.9 10.9 4.5 1 23 573 595 573 596 0.96
12 19 4.3e-05 0.014 17.6 1.0 2 23 695 716 694 716 0.97
13 19 0.043 14 8.2 0.5 1 23 735 757 735 757 0.97
14 19 0.4 1.3e+02 5.1 1.6 3 23 766 786 765 786 0.98
15 19 0.00041 0.14 14.5 0.7 1 23 892 914 892 914 0.98
16 19 0.01 3.4 10.1 0.3 2 23 927 948 926 948 0.95
17 19 0.0012 0.39 13.1 0.3 1 20 956 975 956 978 0.95
18 19 0.036 12 8.4 0.3 1 23 985 1007 985 1007 0.92
19 19 3e-05 0.0099 18.1 0.0 2 23 1056 1077 1055 1077 0.95

Sequence Information

Coding Sequence
ATGCCCTTCAGATGTGAATTCTGCTCTCGTTTGTTTAAACACAAACGTTCACGTGATCGCCATATTAAACTGCATACCGGTGACAAAAAGTATCGTTGTGCCAATTGCGAAGCTGCCTTTTCCCGCAGCGACCACTTAAAGATCCACATGAAGACCCACGACACCCAGAAACCCTTTCAATGCACCATCTGCACGAGGGGCTACAACACCGCAGCGGCGCTTACTTCCCACATGCAGAGTCATAAGAGGGCTGCGGGTGGCGATGGTCCTACAGGAGGAGTTGGAAGTTTAGGTCCTTTGGGCCTACCCGATGCTCCCGGCTTCCGCTGCTTGCAGTGTGGCGAGGCCTTCAAACGCCCCGAACAACTTCAGAGTCATATGACGTCAGCGCATGTGAACGACTCTCCACCGCCGCCTGGTGCCTGTTCGCCGCCACAGTCGGCGTCTTCTGCGGCGGCTGCAGCGGCGGCGGCCGCAGCTATAGGCTTGCTGCAGGCGGCGGCCTCTTCGcgaccgccgccgccgccaccctTACAACTACATGCACCGATGCCTCAATCGGCGCCACAACCACCGCAAGCGCTACCACCACAACTTGGACAACTTCACCATCTTCCGGCTTCTGCGAAACTTGCTTGTATTTACTGCACCAAGGACACCTTCACTACAATGGAGCAGTTGCAACTGCATGTCCAAGCGATGCATGGTTCTATTGTCAACGGAGAGCTACGCGAATTTTCatccccccctcctccaccGCCACCCCCTCCACCGCCGCCCCCCACAGGATCTGATTCAGTCGCTACAGCTCCTTTTGCCTGCGATTTTTGTACGATGCGTTTCTCTTCAGCTCATGCGTTGCGGAAGCATTGTAACCAACAACATGCAGAAATTACCTCGGCCCATGCAGATGGTGTATCTACAAGTTCAGCTGCGCCGCCGGCACCTCTCTGTTGCGCGCCTTGCGCATTGCCTTTTGCAAGCGCTGCACAATTCGCCGAACATTATTTACTAGTACATGCGGCAGCCGCAGTGGCAGCTGCAGTGGAGCAGCTCGGACCTACTGATTTAAGTAAACCCAAGCGTGCCCGAGTTGAGTATCCCCCGCAAGGTCCTCTTCTTTGCAATCAATGCTCTGCCGCCTTGCCTGACTTCGAGGCCTTCcgGAGTCACTTGAAGATGCACCTGGATGGTGCAGTACCCCCTCCGACGGCAATCTCTGGTGGCTTATGCCCGCACTGTTGCAGTGAATTGCCAGCAGATGCGCGGCGTGCAGAATTGCACGTTGCCAGTCATTTCATGAGCGCTGAGACAGAATATGGATGTCAGAGTTGTCTCAAGCTCTTTCCTAAACAAGATGAATTACAGCGCCATTTGCTTGACTTGCATGCGCACCATCTATACCGATGCGCTCTCTGCAAAGACCTCTTTGATAGTAAAGTCGCCATTCAGGTTCATTTCGCTGTTAAGCATTCTAATGAATGTAAATTACTAAGATGCACTGCCTGCCCTCCCGGATCGACAAGTggtctttctttatttagatcAGAAATTGAACTCTGCGCCCATATCCGATCAGCCCATGGCGCACTACTAtcagctgcagctgctgcacCGGCCCCGATGTCTCTACCGGGTCATCGCTGTCCTTTCTGTCGTCTCGCATGCAACTCCGAACTGGAGATGCAATTACATTTGGCTGCGCATGCTAAGCATTTTCGTTGTCCGATATGTCGAGAAGCTTTCCATGTGGAATTCTTATTAGATAGACATATGCATACTCATCATGGACAGCCTCAAATGTCGCCGGCTCTTAATGGAGGTCTGGTGGGAGGTTTGTCCCCTCAGGATCCTTCGTCGGCAAAGCCTTCCCCTCGACTACCAACTCCTACATCAAATACACCAGCTACACAAAGGCTCACTCCGCCCGGTGTCAGATGCAACGGGCAGGCGTCTCCTCCGGGCGCGGCAGCAGTGGCTGCTGATGTTGATGGCAACGGCTCCACGACAAGCAGCACCAAATCTACAAAAGCAGCTGCTGCAGCGGCTGTTGTAGCTGCAACAGCTGCTTCAGTATCCCTACAATGCGCATACTGCAGTGAAGTATGCAAGACCCGCGTGGACCTTGAGGTTCATATGAAAACCCACGCCGGGCAAGGGAGCTCCTCTCCCGGAGGTCCCCAGACTTCGACACCCGCCAAGCACAAATGCAATATTTGTGACGAGCTCTGCCCAAGTGCTGCAGTACTCGCCGAGCATAAGCTCACCCACTGCAAGGTGGTAGGAGGTGCCTTGTGTACGCACTGTAAGGCACCACTGGCCTCTGAGGCAGACTACCACCAGCACCTGCGTCAGCATCAACCACAGCTGCCGGCGGCCTGCATCGTCTGCAGGCAGACGTTGGGCTCCGATCTGGAGGCCAGGCTACATGCAAGGTTCCACCTGCAGCAATCGCAGCAACAAGATGCCTCTTCAGCCGCCAGTCGTCAATGCTGCGCACTTTGTCTTAAGCCGGCAGATTCTCCCCTCATACCTGCagGTGCTTCAGGTGCCTTCTTGTGCGCTGAGTGCCTGAGCCGTGCATCTCCACAGCCTGCGCCGACAACTTCCACGTCGACGTCGACTTCACCTAGCAGCAAGGCAGCAACGCCGTCAACCACGGCCTCTTGTCAACATCGATGCAGTGAATGCCAAGTCAAGTTCGAGTCCAAGGAGGCTCTGGATGCACACTTGCAGATGCATCGTACTTCATTCCAGacTACGTCGGAACCTCGCACAGAATGTCGTCTTTGCGTTCGTCTGTTTCCTTCGCAAGCTCACCTGCAGGCGCACTTAATCGAGCACACCTTCGCGGGTTGTGGCGCCTTCACTTGTTATTTATGCTCTGCCGTGTTCACCACGGCACACGGCCTCCAGgcGCATATGCCCGAACATGGAGCTGCAAGTCGACCCTATGACTGTCCAAGATGCGGAGTTCGATTCTTTTTCCGTGCTGAACTCGACAATCACGCATTTTTGCATTTGGATTCAGACGCTTCCTCTGCTCAGACACCAACCTCTACATTCCAGGAACAAAAGCGCGGAGGTGGCCAACGGTCATCACGGCCTTCGAGTCGCAAAGGCTCAGCTTCCCCCGGCATGGGAGGCGAGTCAGGAGGTCTTCTGCCCTGTGGCGAGTGTGGCAAGCAATTTTCTTCGCCAAGAAGTCTGGCTGCCCATGCCAAGAATCACTCAGCGCCCCTCAATGGCTCCGCCCTCCATAAGATTTTCCAGGTGAAGCGCGAGGTGAAAGAAGAGCCGATTGAGAACATCTCTGACCAAGAAACCATCGCCGAGAAGATCAACGAAGAACACGACCCAGAAGAGGACATCGACGTCACATCTTCTCAGCCTGATCCAATTGCATCTTCGTGA
Protein Sequence
MPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCANCEAAFSRSDHLKIHMKTHDTQKPFQCTICTRGYNTAAALTSHMQSHKRAAGGDGPTGGVGSLGPLGLPDAPGFRCLQCGEAFKRPEQLQSHMTSAHVNDSPPPPGACSPPQSASSAAAAAAAAAAIGLLQAAASSRPPPPPPLQLHAPMPQSAPQPPQALPPQLGQLHHLPASAKLACIYCTKDTFTTMEQLQLHVQAMHGSIVNGELREFSSPPPPPPPPPPPPPTGSDSVATAPFACDFCTMRFSSAHALRKHCNQQHAEITSAHADGVSTSSAAPPAPLCCAPCALPFASAAQFAEHYLLVHAAAAVAAAVEQLGPTDLSKPKRARVEYPPQGPLLCNQCSAALPDFEAFRSHLKMHLDGAVPPPTAISGGLCPHCCSELPADARRAELHVASHFMSAETEYGCQSCLKLFPKQDELQRHLLDLHAHHLYRCALCKDLFDSKVAIQVHFAVKHSNECKLLRCTACPPGSTSGLSLFRSEIELCAHIRSAHGALLSAAAAAPAPMSLPGHRCPFCRLACNSELEMQLHLAAHAKHFRCPICREAFHVEFLLDRHMHTHHGQPQMSPALNGGLVGGLSPQDPSSAKPSPRLPTPTSNTPATQRLTPPGVRCNGQASPPGAAAVAADVDGNGSTTSSTKSTKAAAAAAVVAATAASVSLQCAYCSEVCKTRVDLEVHMKTHAGQGSSSPGGPQTSTPAKHKCNICDELCPSAAVLAEHKLTHCKVVGGALCTHCKAPLASEADYHQHLRQHQPQLPAACIVCRQTLGSDLEARLHARFHLQQSQQQDASSAASRQCCALCLKPADSPLIPAGASGAFLCAECLSRASPQPAPTTSTSTSTSPSSKAATPSTTASCQHRCSECQVKFESKEALDAHLQMHRTSFQTTSEPRTECRLCVRLFPSQAHLQAHLIEHTFAGCGAFTCYLCSAVFTTAHGLQAHMPEHGAASRPYDCPRCGVRFFFRAELDNHAFLHLDSDASSAQTPTSTFQEQKRGGGQRSSRPSSRKGSASPGMGGESGGLLPCGECGKQFSSPRSLAAHAKNHSAPLNGSALHKIFQVKREVKEEPIENISDQETIAEKINEEHDPEEDIDVTSSQPDPIASS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-