Amar063456.1
Basic Information
- Insect
- Anisolabis maritima
- Gene Symbol
- -
- Assembly
- GCA_010014785.1
- Location
- JAAAKE010008224.1:25077284-25084163[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.2 3.9e+02 3.7 0.3 2 21 175 194 174 195 0.92 2 20 0.0047 1.5 11.2 0.3 1 23 202 226 202 226 0.98 3 20 0.0013 0.42 13.0 1.2 2 20 267 285 266 287 0.93 4 20 0.62 2.1e+02 4.5 2.6 1 20 291 310 291 312 0.92 5 20 0.073 24 7.5 0.7 5 23 371 390 369 390 0.91 6 20 0.0016 0.53 12.7 1.9 2 23 447 468 446 468 0.95 7 20 0.17 56 6.3 6.8 1 23 474 497 474 497 0.92 8 20 7.2e-05 0.024 16.9 0.7 1 23 573 596 573 596 0.95 9 20 4.5e-05 0.015 17.5 1.0 1 23 602 624 602 624 0.98 10 20 9.2 3e+03 0.8 0.8 2 23 631 653 631 653 0.86 11 20 5 1.7e+03 1.7 0.1 8 23 668 683 659 683 0.86 12 20 4.5e-05 0.015 17.5 1.1 1 23 689 711 689 711 0.98 13 20 0.03 9.9 8.7 0.1 1 21 717 737 717 738 0.95 14 20 4.7e-05 0.016 17.5 3.2 1 23 769 792 769 792 0.97 15 20 4.7e-06 0.0015 20.7 3.2 1 23 834 856 834 856 0.99 16 20 0.0008 0.27 13.6 7.9 2 23 878 899 877 899 0.97 17 20 0.00038 0.13 14.6 0.7 1 23 974 996 974 996 0.98 18 20 0.00018 0.059 15.7 0.7 1 21 1010 1030 1010 1031 0.95 19 20 0.0049 1.6 11.1 0.7 1 23 1108 1131 1108 1131 0.96 20 20 1.7e-06 0.00056 22.0 4.8 1 23 1145 1167 1145 1167 0.98
Sequence Information
- Coding Sequence
- ATGAAcagtGAATCCTCCTCCTCTCATCATGCGTCAGCTACTTCAGAAGATactcaagaaaaagaaagtgagcATCCTCAAATTGAATCAATTAATGATGAAccgtctcaaaatttttcagacGGTGATAATTCAAATAGTGAGCCTCAAAGTAACCAAGAAGTAggagaaaaaggaaatgaagCTGAGGCTTATCAAAAATCAACTGAAGTTAGTGGTAATGTTGCTGAGGGAGAATCTCTTcaagaaaatggagaaaaagaaaatgaagaagaattagGGGATGAAGATAGAGATTATGAAGAGAGTGCTGGAAATTCAGAAActaataatgaaaacgaaagtGTGCCTACTTCATCGAAAGATTATCAGCCATTATTATTGGCTCATCAAATCAAAGCAGAACCCCGTGTCGTTTTAGAAGAATTAGCTGATGAAATGTTACAAAATCATATGGAATAcgaagaagatgatgaagaatATTTCGAAAATGAACAGCAGCAAGATCAACATGATTTTCTATCCTGCCCAGTTTGTTTTGTTGATTTTGAGACAACAGAGCAAGTCATGCAGCATTTATGCAATATgggttgtaaaattaaatatacatgtagTGAACCAGACTGTTTAAAAGTTTTAGATACTTTTGACAATTATCGTGCACATTATCGAATTCATTATCGTCCATATACCTGTATGAAATGCAAAACTTGTCTATGGTCAAAAGAACGATATTTGAAGCATAGAAATTCTCCTCAATCTTGTGTTACTTATCCTAATCTCAACTATGACACATTATCTTGTAATATTTGTGCGAAAACGTATGCAACTAAAGAGCATCTTTCCAAACATGTTTGTGGACAAAAATACTTCTTTTGTCCTAAATGCAAACGACAATGCACTAGTGTAGGACGTTTAACTTCACATGTTTTTAAATGTCTCACTGCTCAGGTCATGCAAGATTCTACATCTCCTTTAGAAAGGCCTACTGATATTCCTCAATATCCTCAACATTCccaaaaagaacattttgaaCAAGAACTAGAGGAAGATGATGTgcaaaatgatatgcaacaaaATCGTCGTTCAAAAAGAACACTATATACTTGTGAATGTCTTAAAACATTTTCCAATGAGACTCAACTACAAATACATAAAGTGAAAGATCATCCTTTGAATATAATAACAGATTCGTTACCATCGTCAAGTTTACAAGCTACAGATGAATTTTCTAAACAGACTTTTGATTATTCATCTCCAAGAATTCGTCTTGAGGTTCCATATCGAAATAGATACGATCCATCTCCTTATCAGATAAGCTCATATTCAGGGAATCTAAACTGTAAAATATGCCGAAGGCGATtccaatcagaaaataaattacgaCGACATCTCCAAGCtcatttaagtattaaattatataaatgtcatATTTGTCATAAGTCGTTATCGTGTGAAGATTCTTTGCAAAAGCATTTCTCATTATTACATGgaacattttttccaaaagaatttattataaaaaataataaatgccagaaaaattcacaaatttatgAGCATTACTTAGAAGTAAATAATTTGCTACCCAATATAAGTGATAAATCACAAAATGAAGAAAGAGTTCCCCAAGAATTAGAAGAAGACTTGGGTTTGGAGGAGGAAGATCCTCTCCTTACTGAAGAAGTCGATATTAaaccaaacatgaaaaataaatatttttgccaaatatGCCAACGATCATTTTTCGatcaagatttattaaatggaCATATGAAAGCAATGCATTCATCAATGCGATCATTTAAATGTTCATTATGTCCAAAATCATTTTCAGGACCAAAACAATTATATCAACACAATAAAATTCATcgtggtaaaaaattaaatacttgcCAAGTGTGCATGAACCGTTTTCTTACTCCTGTTCAATTAAGACGTCATAAAGAGGAGAAACATGTAATGCCTGAACATTTTCCCTGTATCAGATGCAACAATGAAACTGTTTTTAGTAATGAACAGGAATGGATTGAGCATCAAAATATTCATCCAAAAACTCGACATTACTCTTGCCCTCTTTGTCTCAAGGTGTTTTTTAATATGGACCAATTAAATCAACACCGCagatcacatttattattaaaattatataattgtagcGCTTGTGGGAATTCCTATAATACATTGAATGCCCTGGCAAAACATAAACGTGTGTGCGGCCTAACCAAAAATCCACTTCAGCAGGTAcctaaaatagaaaactttaatgaaaagaatcaaatggatgaaggagaagaagaaagctATGAATGTAATGTTTGTTTCCGAGTGTTTAAACATGCCCAGCATTTGAATGAACATATGACTATTCAACATATGAATCCTCCACCAGAAATTGAACCACTTCAACAAAAACACACGCAATCACAACAACAACCccaacaacagcaacagcaaccTCCAATTTTGGATCGTGAACCtagtttggaaaataataatttccaatgtCCTGTATGTTATCGAGTTTTCAATCGACGACATAATTATCTGGAACATATGCGTTCACATCAAAGAAAACTTGGATTTATTACGAAAAATCCTCAACAGATTgcaacgaaaaaaaagaaattgaaatgtcatatttgtttcaaacattttaatagaaGCCAAAATTTACATTCTCATCTACGAGCTCATCAAAGACATTTATTACGTGaacaacaaatgaaatataatgaagACCCATCTTTAGGAAATGAACCACAAACAGAACAATCAGAGCAACATACACAAttacaacaaaaagaaaaatctctaactcCAACACCGATATCTCAAACTCCTCCACcttcacaacaacaacaaccacagTCACAACAACAAGAGCCATTAATaccattagataaaattaaatccgaATATAAATGTCCAATTTGTGCAAAAACATTTGATCAAGCTGTAAAGATGAAGTTACATaagaattatcattttaaatcatCAGCAGCAAAAAAACCCACTGGACAATTGTATTCTTGTCAATTATGCGGACAAAATTTCACCTCTAAGGTGAATTTGTATACACATCGCAATTTCTGCCAACaagtatttaaaacaaaaactatgcCCTCTCGGGCAGCAAAAACTGGAAAACGATCAGTTTCTCCATTGACTAATCAACAACCTTCCTCAACAACCCCATCGACATCGACAGCAACTTCAACAATACAacagaatcaaataaataatatagattctTCAACAATAGACCCTTTACCATCAAAGAATGAGATTAGCACGTCCTCACTATATCAAGATGAAGTTTATACATGCAACCAATGTCCaagagaatttctaaataagaaagCATTAGCTACTCATCGTACTAAAGCACACCCACCTGTGCCCGTGCCACAAATGCCTCCAGTAACTACCTATGTCTGTCATATTTGTTCGAAACAGTTCTCTAATAGGGCTAACTTGAAACGGCATATTCATTCACATAGCATGATGAACCGTACTCAACCGGCTTGGGCCAACACGCCCCCCTCTACTTCCACCTCACGACGTCACACAATGCCATCACAATCTGCTAGTAATTATGGAATAATGAATCAACTAAACCCAATGGGAGAAATAGAAGATGATTTCGATGATGATATAGATCTCCTTGACGATGATGACGATATTATGGATCATCCCCCAAAATTACAACCACAAATGCCACCACAACCATCACTTtcacagcaacaacaacaaagaggcGTTTCTGGTggtaaaaatgaagaattcccCTTCCAATACAACACACTGGCGAAAGGCCTTATAAATGCCGTTTCTGCCCGAACACTTACGCTAGGTCTGCGATGGTGTATAAACATTGCTTAA
- Protein Sequence
- MNSESSSSHHASATSEDTQEKESEHPQIESINDEPSQNFSDGDNSNSEPQSNQEVGEKGNEAEAYQKSTEVSGNVAEGESLQENGEKENEEELGDEDRDYEESAGNSETNNENESVPTSSKDYQPLLLAHQIKAEPRVVLEELADEMLQNHMEYEEDDEEYFENEQQQDQHDFLSCPVCFVDFETTEQVMQHLCNMGCKIKYTCSEPDCLKVLDTFDNYRAHYRIHYRPYTCMKCKTCLWSKERYLKHRNSPQSCVTYPNLNYDTLSCNICAKTYATKEHLSKHVCGQKYFFCPKCKRQCTSVGRLTSHVFKCLTAQVMQDSTSPLERPTDIPQYPQHSQKEHFEQELEEDDVQNDMQQNRRSKRTLYTCECLKTFSNETQLQIHKVKDHPLNIITDSLPSSSLQATDEFSKQTFDYSSPRIRLEVPYRNRYDPSPYQISSYSGNLNCKICRRRFQSENKLRRHLQAHLSIKLYKCHICHKSLSCEDSLQKHFSLLHGTFFPKEFIIKNNKCQKNSQIYEHYLEVNNLLPNISDKSQNEERVPQELEEDLGLEEEDPLLTEEVDIKPNMKNKYFCQICQRSFFDQDLLNGHMKAMHSSMRSFKCSLCPKSFSGPKQLYQHNKIHRGKKLNTCQVCMNRFLTPVQLRRHKEEKHVMPEHFPCIRCNNETVFSNEQEWIEHQNIHPKTRHYSCPLCLKVFFNMDQLNQHRRSHLLLKLYNCSACGNSYNTLNALAKHKRVCGLTKNPLQQVPKIENFNEKNQMDEGEEESYECNVCFRVFKHAQHLNEHMTIQHMNPPPEIEPLQQKHTQSQQQPQQQQQQPPILDREPSLENNNFQCPVCYRVFNRRHNYLEHMRSHQRKLGFITKNPQQIATKKKKLKCHICFKHFNRSQNLHSHLRAHQRHLLREQQMKYNEDPSLGNEPQTEQSEQHTQLQQKEKSLTPTPISQTPPPSQQQQPQSQQQEPLIPLDKIKSEYKCPICAKTFDQAVKMKLHKNYHFKSSAAKKPTGQLYSCQLCGQNFTSKVNLYTHRNFCQQVFKTKTMPSRAAKTGKRSVSPLTNQQPSSTTPSTSTATSTIQQNQINNIDSSTIDPLPSKNEISTSSLYQDEVYTCNQCPREFLNKKALATHRTKAHPPVPVPQMPPVTTYVCHICSKQFSNRANLKRHIHSHSMMNRTQPAWANTPPSTSTSRRHTMPSQSASNYGIMNQLNPMGEIEDDFDDDIDLLDDDDDIMDHPPKLQPQMPPQPSLSQQQQQRGVSGGKNEEFPFQYNTLAKGLINAVSARTLTLGLRWCINIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -